Wall clock time and date at job start Tue Mar 31 2020 06:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34229 * 116.99875 * 2 1 4 4 O 1.20823 * 120.00398 * 0.02562 * 3 2 1 5 5 C 1.50711 * 119.99956 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.46874 * 299.99863 * 5 3 2 7 7 C 1.52998 * 109.46977 * 59.99976 * 5 3 2 8 8 C 1.52997 * 109.46986 * 180.02562 * 7 5 3 9 9 C 1.53004 * 109.47245 * 300.00105 * 8 7 5 10 10 C 1.52999 * 109.47000 * 59.99522 * 9 8 7 11 11 C 1.52997 * 109.47512 * 300.00314 * 10 9 8 12 12 H 1.08995 * 109.46952 * 300.00107 * 11 10 9 13 13 C 1.52998 * 109.46986 * 179.97438 * 11 10 9 14 14 N 1.46497 * 109.47280 * 65.00157 * 13 11 10 15 15 C 1.36937 * 119.99933 * 89.99907 * 14 13 11 16 16 H 1.08003 * 120.00006 * 221.11607 * 15 14 13 17 17 C 1.38814 * 120.00338 * 41.11760 * 15 14 13 18 18 N 1.31615 * 120.00027 * 27.11660 * 17 15 14 19 19 Si 1.86797 * 119.99997 * 207.12941 * 17 15 14 20 20 H 1.48504 * 109.47336 * 179.97438 * 19 17 15 21 21 H 1.48501 * 109.46697 * 299.99109 * 19 17 15 22 22 H 1.48494 * 109.47631 * 59.99173 * 19 17 15 23 23 C 1.46492 * 120.00061 * 269.99439 * 14 13 11 24 24 C 1.53002 * 117.50226 * 194.44198 * 23 14 13 25 25 C 1.52996 * 60.00140 * 252.51311 * 24 23 14 26 26 H 1.09002 * 109.46920 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47195 * 299.99924 * 1 2 3 28 28 H 1.09000 * 109.46769 * 60.00240 * 1 2 3 29 29 H 1.09003 * 109.47091 * 60.00120 * 7 5 3 30 30 H 1.08996 * 109.46949 * 300.00017 * 7 5 3 31 31 H 1.08997 * 109.47258 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.47565 * 59.99688 * 8 7 5 33 33 H 1.09003 * 109.47005 * 300.00087 * 9 8 7 34 34 H 1.08997 * 109.47330 * 180.02562 * 9 8 7 35 35 H 1.09005 * 109.47207 * 179.97438 * 10 9 8 36 36 H 1.09003 * 109.46911 * 60.00967 * 10 9 8 37 37 H 1.09001 * 109.47157 * 304.99477 * 13 11 10 38 38 H 1.09005 * 109.46965 * 185.00146 * 13 11 10 39 39 H 0.97003 * 120.00027 * 4.17713 * 18 17 15 40 40 H 1.09004 * 115.55460 * 340.15864 * 23 14 13 41 41 H 1.08994 * 117.49588 * 0.02562 * 24 23 14 42 42 H 1.09005 * 117.50008 * 145.02292 * 24 23 14 43 43 H 1.09005 * 117.49998 * 252.50613 * 25 24 23 44 44 H 1.09004 * 117.51701 * 107.48214 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9564 0.7806 0.8891 7 6 4.1129 0.5816 -1.2502 8 6 5.6408 0.6611 -1.2504 9 6 6.0752 2.1282 -1.2500 10 6 5.5285 2.8215 -0.0004 11 6 4.0006 2.7420 -0.0002 12 1 3.6109 3.2365 -0.8899 13 6 3.4541 3.4347 1.2497 14 7 3.7677 4.8646 1.1922 15 6 2.8889 5.7352 0.6048 16 1 3.2572 6.5309 -0.0258 17 6 1.5247 5.5950 0.8198 18 7 1.0872 5.0372 1.9288 19 14 0.3099 6.1978 -0.4648 20 1 -1.0751 5.9330 0.0009 21 1 0.4923 7.6569 -0.6722 22 1 0.5468 5.4825 -1.7443 23 6 5.0214 5.3631 1.7630 24 6 5.1476 6.8722 1.9810 25 6 5.9301 6.1939 0.8547 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.7228 1.0759 -2.1399 30 1 3.8038 -0.4636 -1.2502 31 1 6.0302 0.1668 -2.1404 32 1 6.0306 0.1666 -0.3607 33 1 5.6854 2.6228 -2.1397 34 1 7.1637 2.1849 -1.2506 35 1 5.8383 3.8666 0.0002 36 1 5.9183 2.3270 0.8893 37 1 3.9122 2.9977 2.1370 38 1 2.3732 3.3014 1.2958 39 1 1.7146 4.7792 2.6221 40 1 5.5004 4.7074 2.4902 41 1 4.2977 7.4941 1.7000 42 1 5.7096 7.2097 2.8519 43 1 7.0069 6.0851 0.9846 44 1 5.5953 6.3693 -0.1677 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929465622.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:54 Heat of formation + Delta-G solvation = -57.019091 kcal Electronic energy + Delta-G solvation = -24206.872095 eV Core-core repulsion = 20932.158263 eV Total energy + Delta-G solvation = -3274.713832 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.35720 -38.21660 -36.71793 -35.90133 -33.61960 -31.54177 -31.07015 -29.18494 -27.43906 -25.23545 -23.50147 -23.25922 -21.41244 -20.88394 -20.46432 -19.69875 -19.20686 -17.03926 -16.66661 -16.26762 -15.88139 -15.39379 -14.51918 -14.23209 -13.87887 -13.73479 -13.54086 -13.47240 -13.09071 -12.57897 -12.47708 -12.21431 -11.95198 -11.70886 -11.59073 -11.19847 -10.95623 -10.85429 -10.71264 -10.54425 -10.52526 -10.35926 -10.17154 -10.07204 -9.96139 -9.74899 -9.59335 -9.43338 -9.14760 -9.04244 -8.09317 -6.54280 -5.87056 -3.25629 2.77056 3.12508 3.55666 3.64299 3.78258 4.65865 4.89339 4.91360 4.97111 5.02860 5.24272 5.36392 5.44482 5.46026 5.51892 5.53692 5.59090 5.69751 5.76107 5.82455 5.85975 5.90148 5.91370 6.05737 6.14426 6.26112 6.27394 6.32599 6.33072 6.46381 6.49213 6.60227 6.62560 6.77808 6.80783 6.92491 7.00780 7.20815 7.24501 7.55654 8.29037 8.35021 8.73719 9.28820 9.96729 10.42992 11.28080 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012379 B = 0.009160 C = 0.006006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.343381 B = 3056.104974 C = 4660.895528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.370 6.370 3 C 0.443 3.557 4 O -0.456 6.456 5 C -0.069 4.069 6 H 0.097 0.903 7 C -0.108 4.108 8 C -0.114 4.114 9 C -0.121 4.121 10 C -0.110 4.110 11 C -0.085 4.085 12 H 0.079 0.921 13 C 0.134 3.866 14 N -0.552 5.552 15 C -0.363 4.363 16 H 0.045 0.955 17 C 0.007 3.993 18 N -0.889 5.889 19 Si 1.060 2.940 20 H -0.288 1.288 21 H -0.296 1.296 22 H -0.292 1.292 23 C 0.128 3.872 24 C -0.197 4.197 25 C -0.226 4.226 26 H 0.093 0.907 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.049 0.951 37 H 0.018 0.982 38 H 0.105 0.895 39 H 0.267 0.733 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.224 -10.870 -4.179 13.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.288 6.288 3 C 0.284 3.716 4 O -0.339 6.339 5 C -0.089 4.089 6 H 0.115 0.885 7 C -0.145 4.145 8 C -0.151 4.151 9 C -0.159 4.159 10 C -0.148 4.148 11 C -0.106 4.106 12 H 0.097 0.903 13 C 0.008 3.992 14 N -0.268 5.268 15 C -0.492 4.492 16 H 0.063 0.937 17 C -0.199 4.199 18 N -0.525 5.525 19 Si 0.890 3.110 20 H -0.213 1.213 21 H -0.223 1.223 22 H -0.219 1.219 23 C 0.018 3.982 24 C -0.236 4.236 25 C -0.267 4.267 26 H 0.111 0.889 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.036 0.964 38 H 0.122 0.878 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.117 0.883 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.290 -10.472 -4.540 12.194 hybrid contribution 1.534 0.070 0.305 1.566 sum 5.825 -10.402 -4.234 12.652 Atomic orbital electron populations 1.23154 0.77214 1.02694 1.02749 1.86466 1.22784 1.34512 1.85084 1.23981 0.92255 0.81399 0.73992 1.90852 1.66477 1.35109 1.41492 1.21151 0.86634 1.00443 1.00675 0.88495 1.21493 0.96113 1.00213 0.96726 1.21509 0.94859 0.97275 1.01497 1.21589 0.99680 0.95178 0.99428 1.21610 0.95122 1.01831 0.96192 1.21660 0.94925 0.90300 1.03750 0.90284 1.21394 1.02863 0.83288 0.91617 1.43350 1.17161 1.01637 1.64672 1.19498 0.88679 1.14003 1.27011 0.93716 1.25766 0.96690 0.98671 0.98809 1.70753 1.37821 1.39765 1.04122 0.83622 0.76328 0.75096 0.75928 1.21332 1.22317 1.21949 1.21127 0.90491 0.90556 0.95984 1.23049 1.02654 0.99044 0.98878 1.23317 0.96107 1.10553 0.96734 0.88888 0.91836 0.92231 0.91644 0.91276 0.92170 0.92015 0.92170 0.92606 0.89854 0.93225 0.96357 0.87780 0.92250 0.90050 0.88299 0.91144 0.91224 0.89784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.56 101.05 1.07 1.56 16 2 O -0.37 -5.95 10.47 -39.25 -0.41 -6.36 16 3 C 0.44 8.27 6.93 36.01 0.25 8.52 16 4 O -0.46 -10.60 13.42 -18.75 -0.25 -10.85 16 5 C -0.07 -1.13 2.16 -91.77 -0.20 -1.32 16 6 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 7 C -0.11 -1.43 5.14 -26.73 -0.14 -1.57 16 8 C -0.11 -1.34 5.92 -26.73 -0.16 -1.50 16 9 C -0.12 -1.64 5.92 -26.73 -0.16 -1.79 16 10 C -0.11 -1.80 4.77 -26.73 -0.13 -1.93 16 11 C -0.09 -1.64 1.57 -90.62 -0.14 -1.78 16 12 H 0.08 1.78 8.10 -51.93 -0.42 1.36 16 13 C 0.13 3.08 4.16 -4.04 -0.02 3.06 16 14 N -0.55 -13.60 2.32 -165.66 -0.38 -13.98 16 15 C -0.36 -10.10 7.81 -15.06 -0.12 -10.22 16 16 H 0.05 1.30 7.42 -52.48 -0.39 0.91 16 17 C 0.01 0.20 4.76 -17.43 -0.08 0.12 16 18 N -0.89 -26.81 12.42 55.49 0.69 -26.12 16 19 Si 1.06 26.76 30.00 -169.99 -5.10 21.66 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 21 H -0.30 -7.13 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 23 C 0.13 2.76 5.12 -67.93 -0.35 2.42 16 24 C -0.20 -4.13 9.83 -26.73 -0.26 -4.39 16 25 C -0.23 -4.44 8.83 -26.73 -0.24 -4.67 16 26 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 28 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 1.52 5.31 -51.93 -0.28 1.24 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.02 0.40 8.04 -51.93 -0.42 -0.02 16 38 H 0.10 2.72 3.20 -51.93 -0.17 2.56 16 39 H 0.27 8.18 7.48 -40.82 -0.31 7.87 16 40 H 0.08 1.63 8.10 -51.93 -0.42 1.21 16 41 H 0.10 2.34 7.04 -51.93 -0.37 1.97 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.08 1.79 7.95 -51.93 -0.41 1.38 16 LS Contribution 341.86 15.07 5.15 5.15 Total: -1.00 -31.23 341.86 -8.44 -39.67 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -7.46 Total: 4.34 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -0.67 Total: -13.51 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.31 Total: -40.10 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.66 Total: -17.21 kcal Atomic # 14 Polarization: 26.76 SS G_CDS: -5.10 Total: 21.66 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.23 -8.44 -39.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929465622.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.354 kcal (2) G-P(sol) polarization free energy of solvation -31.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds