Wall clock time and date at job start Tue Mar 31 2020 06:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34229 * 116.99875 * 2 1 4 4 O 1.20823 * 120.00398 * 0.02562 * 3 2 1 5 5 C 1.50711 * 119.99956 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.46874 * 299.99863 * 5 3 2 7 7 C 1.52998 * 109.46977 * 59.99976 * 5 3 2 8 8 C 1.52997 * 109.46986 * 180.02562 * 7 5 3 9 9 C 1.53004 * 109.47245 * 300.00105 * 8 7 5 10 10 C 1.52999 * 109.47000 * 59.99522 * 9 8 7 11 11 C 1.52997 * 109.47512 * 300.00314 * 10 9 8 12 12 H 1.08995 * 109.46952 * 300.00107 * 11 10 9 13 13 C 1.52998 * 109.46986 * 179.97438 * 11 10 9 14 14 N 1.46497 * 109.47280 * 65.00157 * 13 11 10 15 15 C 1.36937 * 119.99933 * 89.99907 * 14 13 11 16 16 H 1.08003 * 120.00006 * 221.11607 * 15 14 13 17 17 C 1.38814 * 120.00338 * 41.11760 * 15 14 13 18 18 N 1.31615 * 120.00027 * 27.11660 * 17 15 14 19 19 Si 1.86797 * 119.99997 * 207.12941 * 17 15 14 20 20 H 1.48504 * 109.47336 * 179.97438 * 19 17 15 21 21 H 1.48501 * 109.46697 * 299.99109 * 19 17 15 22 22 H 1.48494 * 109.47631 * 59.99173 * 19 17 15 23 23 C 1.46492 * 120.00061 * 269.99439 * 14 13 11 24 24 C 1.53002 * 117.50226 * 194.44198 * 23 14 13 25 25 C 1.52996 * 60.00140 * 252.51311 * 24 23 14 26 26 H 1.09002 * 109.46920 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47195 * 299.99924 * 1 2 3 28 28 H 1.09000 * 109.46769 * 60.00240 * 1 2 3 29 29 H 1.09003 * 109.47091 * 60.00120 * 7 5 3 30 30 H 1.08996 * 109.46949 * 300.00017 * 7 5 3 31 31 H 1.08997 * 109.47258 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.47565 * 59.99688 * 8 7 5 33 33 H 1.09003 * 109.47005 * 300.00087 * 9 8 7 34 34 H 1.08997 * 109.47330 * 180.02562 * 9 8 7 35 35 H 1.09005 * 109.47207 * 179.97438 * 10 9 8 36 36 H 1.09003 * 109.46911 * 60.00967 * 10 9 8 37 37 H 1.09001 * 109.47157 * 304.99477 * 13 11 10 38 38 H 1.09005 * 109.46965 * 185.00146 * 13 11 10 39 39 H 0.97003 * 120.00027 * 4.17713 * 18 17 15 40 40 H 1.09004 * 115.55460 * 340.15864 * 23 14 13 41 41 H 1.08994 * 117.49588 * 0.02562 * 24 23 14 42 42 H 1.09005 * 117.50008 * 145.02292 * 24 23 14 43 43 H 1.09005 * 117.49998 * 252.50613 * 25 24 23 44 44 H 1.09004 * 117.51701 * 107.48214 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9564 0.7806 0.8891 7 6 4.1129 0.5816 -1.2502 8 6 5.6408 0.6611 -1.2504 9 6 6.0752 2.1282 -1.2500 10 6 5.5285 2.8215 -0.0004 11 6 4.0006 2.7420 -0.0002 12 1 3.6109 3.2365 -0.8899 13 6 3.4541 3.4347 1.2497 14 7 3.7677 4.8646 1.1922 15 6 2.8889 5.7352 0.6048 16 1 3.2572 6.5309 -0.0258 17 6 1.5247 5.5950 0.8198 18 7 1.0872 5.0372 1.9288 19 14 0.3099 6.1978 -0.4648 20 1 -1.0751 5.9330 0.0009 21 1 0.4923 7.6569 -0.6722 22 1 0.5468 5.4825 -1.7443 23 6 5.0214 5.3631 1.7630 24 6 5.1476 6.8722 1.9810 25 6 5.9301 6.1939 0.8547 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.7228 1.0759 -2.1399 30 1 3.8038 -0.4636 -1.2502 31 1 6.0302 0.1668 -2.1404 32 1 6.0306 0.1666 -0.3607 33 1 5.6854 2.6228 -2.1397 34 1 7.1637 2.1849 -1.2506 35 1 5.8383 3.8666 0.0002 36 1 5.9183 2.3270 0.8893 37 1 3.9122 2.9977 2.1370 38 1 2.3732 3.3014 1.2958 39 1 1.7146 4.7792 2.6221 40 1 5.5004 4.7074 2.4902 41 1 4.2977 7.4941 1.7000 42 1 5.7096 7.2097 2.8519 43 1 7.0069 6.0851 0.9846 44 1 5.5953 6.3693 -0.1677 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929465622.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:53 Heat of formation + Delta-G solvation = -73.780017 kcal Electronic energy + Delta-G solvation = -24207.598903 eV Core-core repulsion = 20932.158263 eV Total energy + Delta-G solvation = -3275.440640 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.79099 -39.66112 -38.32737 -37.34535 -35.46612 -33.24936 -32.32970 -30.88730 -28.64108 -27.01898 -25.30580 -24.51576 -23.05798 -22.31251 -21.86297 -21.46116 -20.54927 -18.70923 -18.42968 -17.63975 -17.31249 -17.12699 -16.00332 -15.73583 -15.58469 -15.17575 -14.96440 -14.82075 -14.57257 -14.24945 -14.05944 -13.55912 -13.31837 -13.24965 -12.91322 -12.77762 -12.64534 -12.30165 -12.23189 -12.19764 -12.02831 -11.92848 -11.67247 -11.63950 -11.50836 -11.38793 -11.21911 -10.97662 -10.88487 -10.64072 -10.22640 -8.64786 -7.98154 -5.44014 1.32070 1.46910 1.58235 1.72788 1.83791 2.61706 3.21165 3.32728 3.50452 3.71401 3.83293 3.85931 4.22159 4.25089 4.28973 4.32669 4.33549 4.35504 4.43437 4.45898 4.50129 4.57469 4.66886 4.69437 4.71208 4.79041 4.89286 4.99696 5.02476 5.17023 5.20816 5.28177 5.29551 5.36829 5.39059 5.46978 5.51640 5.56143 5.65211 5.80984 6.05166 6.48893 6.91006 7.25642 7.88993 8.34043 9.03166 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012379 B = 0.009160 C = 0.006006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.343381 B = 3056.104974 C = 4660.895528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.362 6.362 3 C 0.443 3.557 4 O -0.511 6.511 5 C -0.067 4.067 6 H 0.119 0.881 7 C -0.102 4.102 8 C -0.107 4.107 9 C -0.118 4.118 10 C -0.104 4.104 11 C -0.072 4.072 12 H 0.034 0.966 13 C 0.131 3.869 14 N -0.567 5.567 15 C -0.352 4.352 16 H 0.026 0.974 17 C -0.037 4.037 18 N -0.912 5.912 19 Si 1.094 2.906 20 H -0.293 1.293 21 H -0.276 1.276 22 H -0.293 1.293 23 C 0.110 3.890 24 C -0.202 4.202 25 C -0.197 4.197 26 H 0.139 0.861 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.045 0.955 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.025 0.975 38 H 0.074 0.926 39 H 0.252 0.748 40 H 0.103 0.897 41 H 0.063 0.937 42 H 0.101 0.899 43 H 0.108 0.892 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.635 -12.891 -4.650 16.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.279 6.279 3 C 0.286 3.714 4 O -0.398 6.398 5 C -0.086 4.086 6 H 0.137 0.863 7 C -0.139 4.139 8 C -0.144 4.144 9 C -0.155 4.155 10 C -0.141 4.141 11 C -0.092 4.092 12 H 0.053 0.947 13 C 0.005 3.995 14 N -0.285 5.285 15 C -0.482 4.482 16 H 0.044 0.956 17 C -0.238 4.238 18 N -0.550 5.550 19 Si 0.921 3.079 20 H -0.219 1.219 21 H -0.202 1.202 22 H -0.220 1.220 23 C 0.001 3.999 24 C -0.241 4.241 25 C -0.237 4.237 26 H 0.157 0.843 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.044 0.956 38 H 0.091 0.909 39 H 0.062 0.938 40 H 0.121 0.879 41 H 0.082 0.918 42 H 0.119 0.881 43 H 0.126 0.874 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.737 -12.508 -5.020 15.068 hybrid contribution 0.803 0.682 0.468 1.153 sum 7.540 -11.826 -4.552 14.746 Atomic orbital electron populations 1.23423 0.75840 1.05340 1.01654 1.86457 1.24100 1.32952 1.84347 1.24546 0.93283 0.81236 0.72338 1.90847 1.67781 1.36981 1.44196 1.21212 0.85170 0.98854 1.03375 0.86278 1.21508 0.97487 1.00744 0.94186 1.21505 0.93147 0.96084 1.03658 1.21562 1.00867 0.96070 0.97003 1.21528 0.92657 1.01318 0.98637 1.21353 0.96875 0.91525 0.99484 0.94705 1.21372 1.01448 0.82922 0.93711 1.43447 1.17732 1.02061 1.65272 1.19472 0.89280 1.13558 1.25925 0.95585 1.26670 0.98421 0.99193 0.99563 1.70857 1.37215 1.42268 1.04703 0.83150 0.74607 0.75845 0.74283 1.21875 1.20204 1.21964 1.21353 0.89822 0.91241 0.97437 1.23044 1.02325 0.97984 1.00739 1.23216 0.97692 1.07928 0.94894 0.84269 0.93543 0.92844 0.93063 0.89026 0.89617 0.90181 0.93648 0.90303 0.91947 0.91548 0.95648 0.90863 0.93819 0.87894 0.91849 0.88115 0.87405 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 10.56 113.37 1.20 2.02 16 2 O -0.36 -11.25 10.47 -51.40 -0.54 -11.79 16 3 C 0.44 16.68 6.93 71.24 0.49 17.18 16 4 O -0.51 -24.88 13.42 21.97 0.29 -24.58 16 5 C -0.07 -2.09 2.16 -11.54 -0.02 -2.12 16 6 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 7 C -0.10 -2.44 5.14 30.59 0.16 -2.29 16 8 C -0.11 -2.06 5.92 30.59 0.18 -1.88 16 9 C -0.12 -2.83 5.92 30.60 0.18 -2.65 16 10 C -0.10 -3.22 4.77 30.59 0.15 -3.07 16 11 C -0.07 -2.76 1.57 -10.80 -0.02 -2.78 16 12 H 0.03 1.63 8.10 -2.39 -0.02 1.61 16 13 C 0.13 6.15 4.16 86.38 0.36 6.51 16 14 N -0.57 -28.68 2.32 -678.04 -1.57 -30.25 16 15 C -0.35 -20.39 7.81 84.03 0.66 -19.73 16 16 H 0.03 1.59 7.42 -2.91 -0.02 1.57 16 17 C -0.04 -2.23 4.76 84.86 0.40 -1.82 16 18 N -0.91 -57.45 12.42 21.65 0.27 -57.18 16 19 Si 1.09 56.14 30.00 68.60 2.06 58.20 16 20 H -0.29 -15.16 7.11 99.48 0.71 -14.45 16 21 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 22 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16 23 C 0.11 4.68 5.12 44.99 0.23 4.91 16 24 C -0.20 -8.33 9.83 30.59 0.30 -8.03 16 25 C -0.20 -7.43 8.83 30.59 0.27 -7.16 16 26 H 0.14 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.05 1.40 8.13 -2.39 -0.02 1.38 16 28 H 0.05 1.49 8.13 -2.39 -0.02 1.47 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.09 1.83 8.11 -2.39 -0.02 1.81 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 33 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.06 2.19 5.31 -2.38 -0.01 2.18 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.03 1.11 8.04 -2.39 -0.02 1.10 16 38 H 0.07 4.01 3.20 -2.38 -0.01 4.00 16 39 H 0.25 16.19 7.48 -92.71 -0.69 15.50 16 40 H 0.10 3.93 8.10 -2.38 -0.02 3.91 16 41 H 0.06 3.07 7.04 -2.39 -0.02 3.05 16 42 H 0.10 3.51 8.14 -2.38 -0.02 3.49 16 43 H 0.11 3.28 8.14 -2.38 -0.02 3.26 16 44 H 0.06 2.62 7.95 -2.39 -0.02 2.60 16 Total: -1.00 -72.56 341.86 6.09 -66.47 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 1.04 Total: 20.03 kcal Atomic # 6 Polarization: -25.44 SS G_CDS: 4.53 Total: -20.90 kcal Atomic # 7 Polarization: -86.13 SS G_CDS: -1.30 Total: -87.43 kcal Atomic # 8 Polarization: -36.12 SS G_CDS: -0.24 Total: -36.37 kcal Atomic # 14 Polarization: 56.14 SS G_CDS: 2.06 Total: 58.20 kcal Total: -72.56 6.09 -66.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929465622.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.313 kcal (2) G-P(sol) polarization free energy of solvation -72.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds