Wall clock time and date at job start Tue Mar 31 2020 06:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34235 * 116.99744 * 2 1 4 4 O 1.20826 * 120.00176 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99977 * 179.97438 * 3 2 1 6 6 H 1.09001 * 110.53599 * 61.16409 * 5 3 2 7 7 C 1.54267 * 110.48916 * 298.55321 * 5 3 2 8 8 C 1.53866 * 106.64186 * 217.73581 * 7 5 3 9 9 C 1.54274 * 106.59824 * 359.97305 * 8 7 5 10 10 H 1.08999 * 110.48665 * 264.93368 * 9 8 7 11 11 N 1.46898 * 110.48633 * 142.42105 * 9 8 7 12 12 C 1.46909 * 110.99694 * 92.52482 * 11 9 8 13 13 C 1.50695 * 110.01350 * 60.03910 * 12 11 9 14 14 H 1.08003 * 119.99551 * 244.59765 * 13 12 11 15 15 C 1.37884 * 120.00296 * 64.60631 * 13 12 11 16 16 N 1.31509 * 119.99809 * 184.76502 * 15 13 12 17 17 Si 1.86791 * 119.99745 * 4.76464 * 15 13 12 18 18 H 1.48501 * 109.47506 * 84.83755 * 17 15 13 19 19 H 1.48502 * 109.47040 * 204.84025 * 17 15 13 20 20 H 1.48505 * 109.47198 * 324.83911 * 17 15 13 21 21 C 1.54266 * 110.03018 * 298.59459 * 12 11 9 22 22 C 1.54892 * 104.19230 * 217.10625 * 21 12 11 23 23 C 1.54894 * 102.75065 * 37.94338 * 22 21 12 24 24 C 1.53875 * 110.02691 * 181.42741 * 12 11 9 25 25 C 1.54891 * 104.19389 * 23.61153 * 9 8 7 26 26 H 1.09001 * 109.47167 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47229 * 299.99734 * 1 2 3 28 28 H 1.09005 * 109.47660 * 59.99385 * 1 2 3 29 29 H 1.08998 * 110.03605 * 98.42101 * 7 5 3 30 30 H 1.09003 * 110.03142 * 337.04558 * 7 5 3 31 31 H 1.08997 * 110.03701 * 119.26163 * 8 7 5 32 32 H 1.08996 * 110.03329 * 240.64113 * 8 7 5 33 33 H 1.00903 * 111.00299 * 328.57552 * 11 9 8 34 34 H 0.97002 * 119.99804 * 179.97438 * 16 15 13 35 35 H 1.08993 * 110.49073 * 335.78257 * 21 12 11 36 36 H 1.09000 * 110.48161 * 98.43162 * 21 12 11 37 37 H 1.09002 * 110.75625 * 279.62945 * 22 21 12 38 38 H 1.08999 * 110.75779 * 156.25930 * 22 21 12 39 39 H 1.08996 * 110.48824 * 203.37825 * 23 22 21 40 40 H 1.08998 * 110.59457 * 80.79293 * 23 22 21 41 41 H 1.08999 * 110.03196 * 238.56996 * 24 12 11 42 42 H 1.08997 * 110.03413 * 359.95544 * 24 12 11 43 43 H 1.08994 * 110.75588 * 80.37208 * 25 9 8 44 44 H 1.08996 * 110.75484 * 203.56115 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9743 0.8032 -0.8933 7 6 4.1412 0.6138 1.2703 8 6 5.3443 1.4683 1.7059 9 6 5.4597 2.6195 0.6854 10 1 6.1740 2.3650 -0.0976 11 7 5.8569 3.8641 1.3571 12 6 7.3168 4.0274 1.3425 13 6 7.8164 4.0738 -0.0785 14 1 8.4653 3.2937 -0.4485 15 6 7.4452 5.1122 -0.9063 16 7 7.8035 5.1047 -2.1716 17 14 6.4335 6.5295 -0.2304 18 1 7.3372 7.5311 0.3903 19 1 5.6733 7.1663 -1.3357 20 1 5.4854 6.0177 0.7917 21 6 7.9864 2.8632 2.1015 22 6 9.1830 3.5234 2.8305 23 6 8.6052 4.8935 3.2645 24 6 7.7101 5.3183 2.0819 25 6 4.0331 2.7495 0.0965 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 4.4661 -0.4025 1.0476 30 1 3.3879 0.6004 2.0580 31 1 5.1746 1.8704 2.7048 32 1 6.2530 0.8666 1.6955 33 1 5.4990 3.8964 2.3000 34 1 7.5421 5.8350 -2.7540 35 1 7.2934 2.4288 2.8219 36 1 8.3373 2.1040 1.4025 37 1 10.0239 3.6570 2.1500 38 1 9.4777 2.9356 3.6998 39 1 9.4076 5.6157 3.4143 40 1 8.0125 4.7891 4.1733 41 1 8.2632 5.9779 1.4133 42 1 6.8178 5.8239 2.4509 43 1 3.3879 3.3154 0.7684 44 1 4.0630 3.2132 -0.8895 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170538508.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:21 Heat of formation + Delta-G solvation = -110.653489 kcal Electronic energy + Delta-G solvation = -23581.726355 eV Core-core repulsion = 20304.686761 eV Total energy + Delta-G solvation = -3277.039594 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.70704 -40.24122 -38.33268 -37.35659 -34.53752 -33.76447 -30.47933 -29.63333 -29.40386 -28.57570 -27.15171 -25.29491 -23.42671 -21.60396 -21.12617 -20.80742 -20.47887 -18.68058 -18.22407 -17.73774 -17.46249 -16.93863 -16.50455 -16.05911 -15.53575 -15.31474 -14.78522 -14.49775 -14.16959 -14.12175 -14.11276 -13.78410 -13.49803 -13.25797 -13.00330 -12.73921 -12.66691 -12.19037 -12.14103 -12.08722 -11.91828 -11.80642 -11.69122 -11.66641 -11.42428 -11.35285 -11.23893 -11.17880 -11.10525 -10.84309 -10.54433 -8.64782 -8.17949 -6.22371 1.13787 1.44462 1.54309 1.73822 1.80814 2.57559 3.16793 3.43311 3.66651 3.69918 3.99838 4.09185 4.14610 4.20706 4.29891 4.31721 4.33422 4.49758 4.53179 4.67380 4.69893 4.72510 4.73139 4.83966 4.93559 4.97010 4.99928 5.02630 5.10009 5.14158 5.15514 5.27090 5.30578 5.33820 5.34963 5.42789 5.56899 5.62351 5.70967 5.88578 6.20410 6.70857 6.73515 6.81393 7.20006 7.53044 8.95913 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019680 B = 0.005570 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.421369 B = 5025.539978 C = 5773.689729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.359 6.359 3 C 0.474 3.526 4 O -0.539 6.539 5 C -0.086 4.086 6 H 0.122 0.878 7 C -0.094 4.094 8 C -0.139 4.139 9 C 0.099 3.901 10 H 0.067 0.933 11 N -0.682 5.682 12 C 0.209 3.791 13 C -0.484 4.484 14 H 0.027 0.973 15 C 0.034 3.966 16 N -0.953 5.953 17 Si 0.928 3.072 18 H -0.293 1.293 19 H -0.333 1.333 20 H -0.188 1.188 21 C -0.129 4.129 22 C -0.115 4.115 23 C -0.111 4.111 24 C -0.135 4.135 25 C -0.092 4.092 26 H 0.135 0.865 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.328 0.672 34 H 0.256 0.744 35 H 0.075 0.925 36 H 0.040 0.960 37 H 0.044 0.956 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.082 0.918 41 H 0.038 0.962 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.596 -11.238 11.729 18.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C 0.318 3.682 4 O -0.429 6.429 5 C -0.106 4.106 6 H 0.140 0.860 7 C -0.132 4.132 8 C -0.179 4.179 9 C -0.011 4.011 10 H 0.085 0.915 11 N -0.312 5.312 12 C 0.120 3.880 13 C -0.522 4.522 14 H 0.046 0.954 15 C -0.164 4.164 16 N -0.594 5.594 17 Si 0.757 3.243 18 H -0.221 1.221 19 H -0.264 1.264 20 H -0.109 1.109 21 C -0.168 4.168 22 C -0.153 4.153 23 C -0.149 4.149 24 C -0.173 4.173 25 C -0.130 4.130 26 H 0.153 0.847 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.113 0.887 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.148 0.852 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.057 0.943 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.949 -10.481 11.056 18.195 hybrid contribution -0.103 0.624 -0.393 0.744 sum -10.052 -9.857 10.663 17.660 Atomic orbital electron populations 1.23557 0.75045 1.05747 1.02353 1.86520 1.24812 1.32499 1.83655 1.23970 0.92261 0.81123 0.70823 1.90651 1.67857 1.37620 1.46772 1.21961 0.85943 0.99168 1.03514 0.86031 1.21974 0.97232 0.99806 0.94186 1.22925 0.98268 0.97451 0.99221 1.22062 0.94443 0.88234 0.96387 0.91494 1.60894 1.13076 1.35936 1.21246 1.19471 0.84149 0.91560 0.92840 1.20989 1.27908 1.07501 0.95807 0.95439 1.25629 0.95621 1.00873 0.94228 1.70095 1.49130 1.33626 1.06564 0.86346 0.80749 0.78449 0.78747 1.22091 1.26376 1.10861 1.22996 0.97818 0.97924 0.98083 1.22353 0.97343 0.96315 0.99279 1.22280 0.98536 0.96930 0.97151 1.22577 0.99053 0.98408 0.97263 1.22315 0.96860 0.93174 1.00685 0.84715 0.91997 0.92403 0.88697 0.90800 0.90605 0.90961 0.85229 0.93541 0.90650 0.94097 0.93661 0.90100 0.91945 0.89960 0.94282 0.92085 0.91309 0.93861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.63 16 2 O -0.36 -8.31 10.54 -51.47 -0.54 -8.85 16 3 C 0.47 13.47 7.12 71.24 0.51 13.98 16 4 O -0.54 -18.86 15.51 21.96 0.34 -18.52 16 5 C -0.09 -2.36 3.37 -10.44 -0.04 -2.39 16 6 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 7 C -0.09 -2.07 6.34 31.32 0.20 -1.87 16 8 C -0.14 -3.58 4.71 31.32 0.15 -3.43 16 9 C 0.10 3.51 2.66 45.99 0.12 3.64 16 10 H 0.07 2.91 6.59 -2.39 -0.02 2.90 16 11 N -0.68 -25.93 3.44 -442.95 -1.52 -27.45 16 12 C 0.21 8.65 0.38 3.50 0.00 8.65 16 13 C -0.48 -26.12 6.99 25.60 0.18 -25.94 16 14 H 0.03 1.67 7.74 -2.91 -0.02 1.65 16 15 C 0.03 1.99 5.37 84.66 0.45 2.44 16 16 N -0.95 -60.65 13.96 21.45 0.30 -60.35 16 17 Si 0.93 46.85 23.62 68.60 1.62 48.47 16 18 H -0.29 -14.54 6.85 99.48 0.68 -13.86 16 19 H -0.33 -17.95 7.11 99.48 0.71 -17.24 16 20 H -0.19 -8.53 5.29 99.48 0.53 -8.00 16 21 C -0.13 -4.43 4.49 31.67 0.14 -4.29 16 22 C -0.11 -3.59 6.91 31.89 0.22 -3.37 16 23 C -0.11 -3.40 6.83 31.67 0.22 -3.18 16 24 C -0.13 -5.29 4.06 31.32 0.13 -5.17 16 25 C -0.09 -3.21 5.59 31.91 0.18 -3.03 16 26 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.06 1.04 8.13 -2.38 -0.02 1.02 16 28 H 0.06 1.02 8.13 -2.38 -0.02 1.00 16 29 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.07 1.49 7.83 -2.39 -0.02 1.47 16 31 H 0.08 1.75 7.23 -2.39 -0.02 1.74 16 32 H 0.07 1.81 7.50 -2.39 -0.02 1.80 16 33 H 0.33 10.69 7.95 -89.69 -0.71 9.98 16 34 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 35 H 0.08 2.16 6.27 -2.39 -0.01 2.14 16 36 H 0.04 1.55 7.63 -2.39 -0.02 1.53 16 37 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.04 1.78 5.50 -2.39 -0.01 1.77 16 42 H 0.06 2.26 6.78 -2.39 -0.02 2.25 16 43 H 0.07 2.48 7.53 -2.39 -0.02 2.46 16 44 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -70.28 329.95 3.91 -66.37 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 0.06 Total: 22.67 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: 3.66 Total: -22.33 kcal Atomic # 7 Polarization: -86.58 SS G_CDS: -1.23 Total: -87.80 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.20 Total: -27.37 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 1.62 Total: 48.47 kcal Total: -70.28 3.91 -66.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170538508.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.287 kcal (2) G-P(sol) polarization free energy of solvation -70.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds