Wall clock time and date at job start Tue Mar 31 2020 06:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34226 * 116.99720 * 2 1 4 4 O 1.20828 * 120.00516 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99895 * 179.97438 * 3 2 1 6 6 H 1.08998 * 110.01982 * 58.60587 * 5 3 2 7 7 C 1.54273 * 110.03210 * 297.16525 * 5 3 2 8 8 C 1.54889 * 104.19795 * 217.10718 * 7 5 3 9 9 C 1.54887 * 102.74687 * 37.93867 * 8 7 5 10 10 H 1.09009 * 110.48440 * 80.73966 * 9 8 7 11 11 N 1.46902 * 110.48551 * 203.37810 * 9 8 7 12 12 C 1.46899 * 111.00323 * 235.61392 * 11 9 8 13 13 C 1.50702 * 110.01712 * 300.23224 * 12 11 9 14 14 H 1.08005 * 119.99877 * 124.44763 * 13 12 11 15 15 C 1.37871 * 120.00158 * 304.45582 * 13 12 11 16 16 N 1.31512 * 119.99913 * 357.28503 * 15 13 12 17 17 Si 1.86804 * 120.00140 * 177.29162 * 15 13 12 18 18 H 1.48503 * 109.47056 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47240 * 119.99503 * 17 15 13 20 20 H 1.48500 * 109.46991 * 239.99919 * 17 15 13 21 21 C 1.54259 * 110.03426 * 178.78852 * 12 11 9 22 22 C 1.54889 * 104.19826 * 217.10530 * 21 12 11 23 23 C 1.54889 * 102.74755 * 37.94407 * 22 21 12 24 24 C 1.53881 * 110.03229 * 61.62170 * 12 11 9 25 25 C 1.53873 * 110.03320 * 180.02562 * 5 3 2 26 26 H 1.08990 * 109.47632 * 300.00060 * 1 2 3 27 27 H 1.09004 * 109.47286 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46939 * 60.00423 * 1 2 3 29 29 H 1.09003 * 110.48405 * 335.78664 * 7 5 3 30 30 H 1.08998 * 110.48638 * 98.42617 * 7 5 3 31 31 H 1.09000 * 110.75457 * 279.62878 * 8 7 5 32 32 H 1.08998 * 110.91440 * 156.33033 * 8 7 5 33 33 H 1.00901 * 110.99867 * 359.57294 * 11 9 8 34 34 H 0.97000 * 120.00084 * 180.02562 * 16 15 13 35 35 H 1.09003 * 110.48708 * 335.78791 * 21 12 11 36 36 H 1.09005 * 110.48733 * 98.42925 * 21 12 11 37 37 H 1.09003 * 110.75588 * 279.63109 * 22 21 12 38 38 H 1.08997 * 110.75640 * 156.25574 * 22 21 12 39 39 H 1.08997 * 110.48607 * 203.37927 * 23 22 21 40 40 H 1.09006 * 110.48760 * 80.73140 * 23 22 21 41 41 H 1.08994 * 110.03300 * 238.57146 * 24 12 11 42 42 H 1.09005 * 110.02418 * 0.02562 * 24 12 11 43 43 H 1.09008 * 110.03047 * 238.56825 * 25 5 3 44 44 H 1.09000 * 110.03363 * 359.94843 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9672 0.7615 -0.8733 7 6 4.1281 0.6420 1.2905 8 6 5.3380 1.5370 1.6569 9 6 4.8369 2.9560 1.2902 10 1 4.2045 3.3542 2.0838 11 7 5.9726 3.8528 1.0373 12 6 5.9044 5.0435 1.8950 13 6 4.6273 5.7982 1.6291 14 1 3.9495 6.0157 2.4414 15 6 4.3242 6.2110 0.3491 16 7 5.1741 5.9932 -0.6306 17 14 2.7064 7.0798 0.0063 18 1 1.9328 7.2014 1.2681 19 1 2.9777 8.4334 -0.5409 20 1 1.9224 6.2947 -0.9807 21 6 7.1218 5.9539 1.6330 22 6 7.4828 6.5169 3.0301 23 6 7.2320 5.3054 3.9620 24 6 5.9744 4.6311 3.3759 25 6 4.0169 2.7462 0.0011 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 3.3812 0.6665 2.0840 30 1 4.4535 -0.3812 1.1029 31 1 6.2107 1.2696 1.0612 32 1 5.5633 1.4699 2.7213 33 1 6.8496 3.3690 1.1594 34 1 4.9610 6.2839 -1.5312 35 1 7.9518 5.3742 1.2292 36 1 6.8540 6.7629 0.9533 37 1 6.8282 7.3481 3.2925 38 1 8.5287 6.8214 3.0654 39 1 7.0446 5.6410 4.9819 40 1 8.0799 4.6208 3.9343 41 1 5.0852 4.9776 3.9024 42 1 6.0595 3.5475 3.4579 43 1 4.6373 2.9469 -0.8725 44 1 3.1472 3.4031 0.0000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170538511.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:25 Heat of formation + Delta-G solvation = -94.446646 kcal Electronic energy + Delta-G solvation = -23801.600500 eV Core-core repulsion = 20525.263687 eV Total energy + Delta-G solvation = -3276.336813 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.39124 -38.31432 -36.83594 -35.94664 -32.64654 -31.66104 -28.85986 -27.85883 -27.51133 -27.13186 -25.40353 -23.50303 -22.02364 -20.29373 -19.68020 -18.77664 -18.42090 -17.48320 -16.46197 -16.17238 -15.99646 -14.91024 -14.75002 -14.53494 -14.04918 -13.82131 -13.37761 -12.93170 -12.72728 -12.31754 -12.27261 -12.10420 -11.80332 -11.49993 -11.36721 -10.94344 -10.86636 -10.69097 -10.63867 -10.46265 -10.35150 -10.28928 -10.17519 -10.00417 -9.94381 -9.83108 -9.56082 -9.38236 -9.30661 -8.77142 -8.14942 -6.69733 -5.73309 -3.85907 2.50397 2.93269 3.42087 3.52062 3.55275 4.60184 4.85873 5.00828 5.09147 5.13413 5.20516 5.30912 5.47348 5.57571 5.65942 5.75283 5.79663 5.83785 5.93584 5.95214 6.08037 6.17972 6.27789 6.36493 6.45763 6.50389 6.57650 6.67340 6.74609 6.77976 6.79652 6.83529 6.98418 7.02174 7.30303 7.34101 7.37364 7.47441 7.90235 8.00881 8.04474 8.40464 8.77349 8.99400 9.31498 9.81561 11.27889 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016537 B = 0.006622 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.775366 B = 4227.379179 C = 5356.578077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.364 6.364 3 C 0.461 3.539 4 O -0.497 6.497 5 C -0.088 4.088 6 H 0.102 0.898 7 C -0.103 4.103 8 C -0.147 4.147 9 C 0.113 3.887 10 H 0.068 0.932 11 N -0.638 5.638 12 C 0.246 3.754 13 C -0.518 4.518 14 H 0.048 0.952 15 C 0.093 3.907 16 N -0.837 5.837 17 Si 0.864 3.136 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.283 1.283 21 C -0.089 4.089 22 C -0.123 4.123 23 C -0.120 4.120 24 C -0.150 4.150 25 C -0.097 4.097 26 H 0.060 0.940 27 H 0.096 0.904 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.301 0.699 34 H 0.251 0.749 35 H 0.033 0.967 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.042 0.958 39 H 0.044 0.956 40 H 0.048 0.952 41 H 0.053 0.947 42 H 0.039 0.961 43 H 0.082 0.918 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.025 -11.241 2.765 11.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.282 6.282 3 C 0.304 3.696 4 O -0.382 6.382 5 C -0.108 4.108 6 H 0.120 0.880 7 C -0.142 4.142 8 C -0.186 4.186 9 C 0.002 3.998 10 H 0.086 0.914 11 N -0.265 5.265 12 C 0.157 3.843 13 C -0.556 4.556 14 H 0.067 0.933 15 C -0.113 4.113 16 N -0.472 5.472 17 Si 0.692 3.308 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.209 1.209 21 C -0.127 4.127 22 C -0.161 4.161 23 C -0.158 4.158 24 C -0.190 4.190 25 C -0.135 4.135 26 H 0.079 0.921 27 H 0.115 0.885 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.118 0.882 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.101 0.899 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.523 -10.589 2.000 10.883 hybrid contribution -1.108 0.078 0.568 1.248 sum -2.631 -10.511 2.568 11.135 Atomic orbital electron populations 1.23191 0.77286 1.03096 1.02445 1.86526 1.22760 1.34247 1.84622 1.24126 0.92638 0.80917 0.71936 1.90681 1.66916 1.36214 1.44422 1.21922 0.85709 1.02181 1.00968 0.88030 1.22174 0.98028 0.98690 0.95278 1.23165 0.97261 0.97645 1.00490 1.21945 0.93924 0.88463 0.95484 0.91397 1.60740 1.00868 1.06355 1.58579 1.19167 0.94660 0.87194 0.83246 1.20890 1.04790 1.36574 0.93389 0.93341 1.24779 0.95197 0.94817 0.96523 1.70098 1.33655 1.43705 0.99725 0.87008 0.85891 0.79403 0.78480 1.20166 1.21490 1.20911 1.22212 0.96407 1.00129 0.93988 1.22476 0.98570 0.97346 0.97705 1.22276 0.97999 0.97732 0.97776 1.23142 0.96577 0.97655 1.01602 1.22247 1.01196 0.89287 1.00803 0.92102 0.88538 0.92168 0.91744 0.91237 0.91199 0.92107 0.88191 0.93918 0.94874 0.90340 0.92144 0.93921 0.93766 0.93366 0.92823 0.94250 0.89895 0.89876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 101.05 1.07 1.45 16 2 O -0.36 -5.27 10.55 -39.25 -0.41 -5.68 16 3 C 0.46 7.93 7.10 36.01 0.26 8.19 16 4 O -0.50 -10.38 14.96 -18.75 -0.28 -10.66 16 5 C -0.09 -1.42 3.41 -90.65 -0.31 -1.72 16 6 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 7 C -0.10 -1.45 6.34 -25.07 -0.16 -1.61 16 8 C -0.15 -2.25 6.04 -24.74 -0.15 -2.40 16 9 C 0.11 2.23 1.96 -66.08 -0.13 2.10 16 10 H 0.07 1.52 6.45 -51.92 -0.33 1.19 16 11 N -0.64 -13.72 5.14 -91.39 -0.47 -14.19 16 12 C 0.25 5.61 0.38 -131.63 -0.05 5.56 16 13 C -0.52 -13.57 6.78 -34.44 -0.23 -13.80 16 14 H 0.05 1.33 7.33 -52.48 -0.38 0.94 16 15 C 0.09 2.50 5.04 -17.82 -0.09 2.41 16 16 N -0.84 -22.75 11.48 55.43 0.64 -22.11 16 17 Si 0.86 21.74 29.54 -169.99 -5.02 16.72 16 18 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 21 C -0.09 -1.99 5.63 -25.08 -0.14 -2.13 16 22 C -0.12 -2.37 6.91 -24.74 -0.17 -2.54 16 23 C -0.12 -2.16 6.83 -25.07 -0.17 -2.33 16 24 C -0.15 -3.03 5.28 -25.61 -0.14 -3.17 16 25 C -0.10 -1.96 6.13 -25.64 -0.16 -2.12 16 26 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 27 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 29 H 0.06 0.92 7.85 -51.93 -0.41 0.51 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.01 7.91 -51.93 -0.41 0.60 16 32 H 0.06 0.89 7.69 -51.93 -0.40 0.49 16 33 H 0.30 5.99 7.85 -39.29 -0.31 5.68 16 34 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 35 H 0.03 0.72 7.90 -51.93 -0.41 0.31 16 36 H 0.08 2.00 6.72 -51.93 -0.35 1.65 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.05 1.15 7.37 -51.93 -0.38 0.76 16 42 H 0.04 0.74 6.63 -51.93 -0.34 0.39 16 43 H 0.08 1.80 8.04 -51.92 -0.42 1.38 16 44 H 0.08 2.00 6.40 -51.93 -0.33 1.66 16 LS Contribution 341.09 15.07 5.14 5.14 Total: -1.00 -28.88 341.09 -8.40 -37.29 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -7.42 Total: 5.61 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -0.57 Total: -12.12 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.17 Total: -36.30 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.69 Total: -16.34 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.88 -8.40 -37.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170538511.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.159 kcal (2) G-P(sol) polarization free energy of solvation -28.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds