Wall clock time and date at job start Tue Mar 31 2020 06:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34226 * 116.99720 * 2 1 4 4 O 1.20828 * 120.00516 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99895 * 179.97438 * 3 2 1 6 6 H 1.08998 * 110.01982 * 58.60587 * 5 3 2 7 7 C 1.54273 * 110.03210 * 297.16525 * 5 3 2 8 8 C 1.54889 * 104.19795 * 217.10718 * 7 5 3 9 9 C 1.54887 * 102.74687 * 37.93867 * 8 7 5 10 10 H 1.09009 * 110.48440 * 80.73966 * 9 8 7 11 11 N 1.46902 * 110.48551 * 203.37810 * 9 8 7 12 12 C 1.46899 * 111.00323 * 235.61392 * 11 9 8 13 13 C 1.50702 * 110.01712 * 300.23224 * 12 11 9 14 14 H 1.08005 * 119.99877 * 124.44763 * 13 12 11 15 15 C 1.37871 * 120.00158 * 304.45582 * 13 12 11 16 16 N 1.31512 * 119.99913 * 357.28503 * 15 13 12 17 17 Si 1.86804 * 120.00140 * 177.29162 * 15 13 12 18 18 H 1.48503 * 109.47056 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47240 * 119.99503 * 17 15 13 20 20 H 1.48500 * 109.46991 * 239.99919 * 17 15 13 21 21 C 1.54259 * 110.03426 * 178.78852 * 12 11 9 22 22 C 1.54889 * 104.19826 * 217.10530 * 21 12 11 23 23 C 1.54889 * 102.74755 * 37.94407 * 22 21 12 24 24 C 1.53881 * 110.03229 * 61.62170 * 12 11 9 25 25 C 1.53873 * 110.03320 * 180.02562 * 5 3 2 26 26 H 1.08990 * 109.47632 * 300.00060 * 1 2 3 27 27 H 1.09004 * 109.47286 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46939 * 60.00423 * 1 2 3 29 29 H 1.09003 * 110.48405 * 335.78664 * 7 5 3 30 30 H 1.08998 * 110.48638 * 98.42617 * 7 5 3 31 31 H 1.09000 * 110.75457 * 279.62878 * 8 7 5 32 32 H 1.08998 * 110.91440 * 156.33033 * 8 7 5 33 33 H 1.00901 * 110.99867 * 359.57294 * 11 9 8 34 34 H 0.97000 * 120.00084 * 180.02562 * 16 15 13 35 35 H 1.09003 * 110.48708 * 335.78791 * 21 12 11 36 36 H 1.09005 * 110.48733 * 98.42925 * 21 12 11 37 37 H 1.09003 * 110.75588 * 279.63109 * 22 21 12 38 38 H 1.08997 * 110.75640 * 156.25574 * 22 21 12 39 39 H 1.08997 * 110.48607 * 203.37927 * 23 22 21 40 40 H 1.09006 * 110.48760 * 80.73140 * 23 22 21 41 41 H 1.08994 * 110.03300 * 238.57146 * 24 12 11 42 42 H 1.09005 * 110.02418 * 0.02562 * 24 12 11 43 43 H 1.09008 * 110.03047 * 238.56825 * 25 5 3 44 44 H 1.09000 * 110.03363 * 359.94843 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9672 0.7615 -0.8733 7 6 4.1281 0.6420 1.2905 8 6 5.3380 1.5370 1.6569 9 6 4.8369 2.9560 1.2902 10 1 4.2045 3.3542 2.0838 11 7 5.9726 3.8528 1.0373 12 6 5.9044 5.0435 1.8950 13 6 4.6273 5.7982 1.6291 14 1 3.9495 6.0157 2.4414 15 6 4.3242 6.2110 0.3491 16 7 5.1741 5.9932 -0.6306 17 14 2.7064 7.0798 0.0063 18 1 1.9328 7.2014 1.2681 19 1 2.9777 8.4334 -0.5409 20 1 1.9224 6.2947 -0.9807 21 6 7.1218 5.9539 1.6330 22 6 7.4828 6.5169 3.0301 23 6 7.2320 5.3054 3.9620 24 6 5.9744 4.6311 3.3759 25 6 4.0169 2.7462 0.0011 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 3.3812 0.6665 2.0840 30 1 4.4535 -0.3812 1.1029 31 1 6.2107 1.2696 1.0612 32 1 5.5633 1.4699 2.7213 33 1 6.8496 3.3690 1.1594 34 1 4.9610 6.2839 -1.5312 35 1 7.9518 5.3742 1.2292 36 1 6.8540 6.7629 0.9533 37 1 6.8282 7.3481 3.2925 38 1 8.5287 6.8214 3.0654 39 1 7.0446 5.6410 4.9819 40 1 8.0799 4.6208 3.9343 41 1 5.0852 4.9776 3.9024 42 1 6.0595 3.5475 3.4579 43 1 4.6373 2.9469 -0.8725 44 1 3.1472 3.4031 0.0000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170538511.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:24 Heat of formation + Delta-G solvation = -111.114315 kcal Electronic energy + Delta-G solvation = -23802.323264 eV Core-core repulsion = 20525.263687 eV Total energy + Delta-G solvation = -3277.059577 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.72879 -39.89982 -38.24862 -37.33310 -34.44307 -33.45418 -30.20229 -29.27567 -29.15081 -28.48904 -27.09521 -25.27787 -23.31943 -21.75772 -21.09972 -20.45163 -20.04549 -18.82905 -17.97340 -17.67067 -17.44024 -16.66514 -16.39220 -16.11038 -15.70987 -15.18667 -14.63991 -14.38651 -14.18099 -13.99967 -13.83170 -13.52579 -13.27295 -13.10406 -12.91464 -12.71125 -12.56852 -12.29449 -12.17076 -12.02773 -11.84023 -11.75525 -11.66917 -11.58986 -11.45829 -11.36238 -11.20614 -11.08884 -10.98800 -10.74873 -10.20257 -8.38326 -7.82690 -5.97526 1.15878 1.31447 1.40221 1.43119 1.75231 2.49465 3.35612 3.54829 3.75505 3.88403 3.95726 4.21883 4.25944 4.26973 4.28342 4.32527 4.46381 4.56482 4.61570 4.67578 4.75461 4.85907 4.89252 4.95772 5.03848 5.08161 5.09282 5.15909 5.25874 5.26545 5.31341 5.31946 5.38242 5.44147 5.58793 5.68515 5.71528 5.76916 5.85394 6.09217 6.47368 6.73861 6.88011 7.17394 7.55716 7.70810 9.14698 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016537 B = 0.006622 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.775366 B = 4227.379179 C = 5356.578077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.356 6.356 3 C 0.465 3.535 4 O -0.545 6.545 5 C -0.084 4.084 6 H 0.130 0.870 7 C -0.093 4.093 8 C -0.133 4.133 9 C 0.112 3.888 10 H 0.033 0.967 11 N -0.651 5.651 12 C 0.241 3.759 13 C -0.522 4.522 14 H 0.025 0.975 15 C 0.066 3.934 16 N -0.848 5.848 17 Si 0.896 3.104 18 H -0.283 1.283 19 H -0.281 1.281 20 H -0.297 1.297 21 C -0.087 4.087 22 C -0.118 4.118 23 C -0.110 4.110 24 C -0.145 4.145 25 C -0.092 4.092 26 H 0.055 0.945 27 H 0.140 0.860 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.313 0.687 34 H 0.246 0.754 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.045 0.955 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.032 0.968 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.357 -13.958 3.835 14.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C 0.309 3.691 4 O -0.435 6.435 5 C -0.103 4.103 6 H 0.148 0.852 7 C -0.131 4.131 8 C -0.171 4.171 9 C 0.001 3.999 10 H 0.052 0.948 11 N -0.280 5.280 12 C 0.151 3.849 13 C -0.561 4.561 14 H 0.044 0.956 15 C -0.138 4.138 16 N -0.484 5.484 17 Si 0.725 3.275 18 H -0.208 1.208 19 H -0.207 1.207 20 H -0.224 1.224 21 C -0.126 4.126 22 C -0.156 4.156 23 C -0.148 4.148 24 C -0.185 4.185 25 C -0.130 4.130 26 H 0.074 0.926 27 H 0.158 0.842 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.127 0.873 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.131 0.869 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.050 0.950 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -0.141 -13.322 3.079 13.674 hybrid contribution -1.640 0.913 0.214 1.890 sum -1.781 -12.409 3.293 12.962 Atomic orbital electron populations 1.23541 0.75366 1.05788 1.02056 1.86505 1.24561 1.32310 1.83797 1.24323 0.93092 0.80976 0.70670 1.90676 1.67979 1.37968 1.46842 1.21884 0.85316 0.99488 1.03648 0.85173 1.22185 0.97090 1.00181 0.93620 1.23040 0.98246 0.94153 1.01665 1.21855 0.92988 0.90994 0.94069 0.94842 1.60515 1.01954 1.06647 1.58848 1.19112 0.92986 0.87544 0.85240 1.21086 1.05885 1.36587 0.92496 0.95634 1.25076 0.96325 0.95570 0.96842 1.70149 1.34085 1.44677 0.99488 0.86522 0.84411 0.79023 0.77555 1.20778 1.20653 1.22390 1.22089 0.96355 0.98953 0.95179 1.22425 0.99830 0.97476 0.95904 1.22234 0.97388 0.97099 0.98049 1.23000 0.97117 0.98839 0.99523 1.22018 0.99015 0.91683 1.00314 0.92605 0.84229 0.92612 0.92056 0.87259 0.89444 0.90679 0.86853 0.94389 0.94229 0.94212 0.93589 0.91251 0.91966 0.90919 0.94954 0.92651 0.91954 0.94697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.73 16 2 O -0.36 -9.57 10.55 -51.38 -0.54 -10.11 16 3 C 0.46 15.79 7.10 71.24 0.51 16.29 16 4 O -0.54 -23.64 14.96 21.96 0.33 -23.31 16 5 C -0.08 -2.58 3.41 -10.81 -0.04 -2.62 16 6 H 0.13 3.28 8.14 -2.39 -0.02 3.26 16 7 C -0.09 -2.29 6.34 31.67 0.20 -2.09 16 8 C -0.13 -3.66 6.04 31.88 0.19 -3.47 16 9 C 0.11 4.41 1.96 45.97 0.09 4.50 16 10 H 0.03 1.54 6.45 -2.38 -0.02 1.53 16 11 N -0.65 -27.91 5.14 -443.05 -2.28 -30.19 16 12 C 0.24 11.02 0.38 3.51 0.00 11.02 16 13 C -0.52 -28.41 6.78 25.60 0.17 -28.24 16 14 H 0.03 1.47 7.33 -2.91 -0.02 1.45 16 15 C 0.07 3.71 5.04 84.65 0.43 4.14 16 16 N -0.85 -47.74 11.48 21.44 0.25 -47.50 16 17 Si 0.90 46.54 29.54 68.60 2.03 48.56 16 18 H -0.28 -14.80 7.11 99.48 0.71 -14.09 16 19 H -0.28 -14.11 7.11 99.48 0.71 -13.40 16 20 H -0.30 -16.01 7.11 99.48 0.71 -15.31 16 21 C -0.09 -3.88 5.63 31.67 0.18 -3.70 16 22 C -0.12 -4.37 6.91 31.89 0.22 -4.15 16 23 C -0.11 -3.63 6.83 31.67 0.22 -3.42 16 24 C -0.14 -5.70 5.28 31.32 0.17 -5.54 16 25 C -0.09 -3.80 6.13 31.30 0.19 -3.61 16 26 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 27 H 0.14 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.06 1.22 8.13 -2.38 -0.02 1.21 16 29 H 0.06 1.57 7.85 -2.39 -0.02 1.55 16 30 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.09 2.16 7.91 -2.39 -0.02 2.15 16 32 H 0.07 1.90 7.69 -2.39 -0.02 1.88 16 33 H 0.31 11.94 7.85 -89.69 -0.70 11.24 16 34 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 35 H 0.04 1.68 7.90 -2.39 -0.02 1.66 16 36 H 0.04 2.06 6.72 -2.38 -0.02 2.04 16 37 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 41 H 0.03 1.38 7.37 -2.39 -0.02 1.36 16 42 H 0.05 1.97 6.63 -2.38 -0.02 1.95 16 43 H 0.06 2.79 8.04 -2.38 -0.02 2.77 16 44 H 0.03 1.77 6.40 -2.39 -0.02 1.75 16 Total: -1.00 -66.86 341.09 3.78 -63.08 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.28 Total: 18.60 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: 3.72 Total: -19.14 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -2.03 Total: -77.68 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -0.21 Total: -33.42 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.56 kcal Total: -66.86 3.78 -63.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170538511.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.031 kcal (2) G-P(sol) polarization free energy of solvation -66.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds