Wall clock time and date at job start Tue Mar 31 2020 06:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 117.00265 * 2 1 4 4 O 1.20829 * 119.99841 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00226 * 179.97438 * 3 2 1 6 6 H 1.09002 * 110.43134 * 57.45396 * 5 3 2 7 7 C 1.54890 * 110.59963 * 294.84341 * 5 3 2 8 8 C 1.54888 * 102.74905 * 203.32118 * 7 5 3 9 9 C 1.54269 * 104.19545 * 37.93891 * 8 7 5 10 10 H 1.09003 * 110.03335 * 95.67332 * 9 8 7 11 11 N 1.46901 * 110.07488 * 217.08359 * 9 8 7 12 12 C 1.46843 * 110.99874 * 298.49046 * 11 9 8 13 13 C 1.53044 * 109.52270 * 174.16218 * 12 11 9 14 14 C 1.53112 * 109.28041 * 59.17293 * 13 12 11 15 15 C 1.53114 * 109.16546 * 302.35071 * 14 13 12 16 16 H 1.08997 * 109.50420 * 297.71305 * 15 14 13 17 17 C 1.50701 * 109.50711 * 177.62929 * 15 14 13 18 18 H 1.07997 * 120.00018 * 275.02308 * 17 15 14 19 19 C 1.37875 * 119.99727 * 95.01736 * 17 15 14 20 20 N 1.31517 * 120.00315 * 184.84721 * 19 17 15 21 21 Si 1.86801 * 120.00306 * 4.84975 * 19 17 15 22 22 H 1.48499 * 109.47211 * 84.88096 * 21 19 17 23 23 H 1.48500 * 109.47277 * 204.89244 * 21 19 17 24 24 H 1.48511 * 109.46986 * 324.88573 * 21 19 17 25 25 C 1.46845 * 110.99769 * 174.27807 * 11 9 8 26 26 C 1.53876 * 106.59769 * 336.39353 * 9 8 7 27 27 H 1.09005 * 109.46763 * 300.00438 * 1 2 3 28 28 H 1.09005 * 109.46940 * 59.99977 * 1 2 3 29 29 H 1.08993 * 109.47170 * 180.02562 * 1 2 3 30 30 H 1.09002 * 110.75421 * 321.63718 * 7 5 3 31 31 H 1.09000 * 110.75695 * 84.82189 * 7 5 3 32 32 H 1.09001 * 110.48712 * 279.26238 * 8 7 5 33 33 H 1.08997 * 110.48693 * 156.61577 * 8 7 5 34 34 H 1.08999 * 109.46189 * 294.17497 * 12 11 9 35 35 H 1.09002 * 109.46497 * 54.15861 * 12 11 9 36 36 H 1.08996 * 109.50528 * 179.12208 * 13 12 11 37 37 H 1.09002 * 109.49870 * 299.23711 * 13 12 11 38 38 H 1.09012 * 109.51999 * 62.25325 * 14 13 12 39 39 H 1.08993 * 109.52405 * 182.37766 * 14 13 12 40 40 H 0.96998 * 120.00689 * 180.02562 * 20 19 17 41 41 H 1.09001 * 109.46594 * 305.85433 * 25 11 9 42 42 H 1.09000 * 109.46169 * 65.82650 * 25 11 9 43 43 H 1.09002 * 110.03335 * 119.28762 * 26 9 8 44 44 H 1.09009 * 110.02824 * 240.66666 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9755 0.7458 -0.8602 7 6 4.1420 0.6953 1.3166 8 6 5.5267 1.3821 1.4157 9 6 5.2764 2.8144 0.9002 10 1 5.0951 3.4867 1.7388 11 7 6.4330 3.2800 0.1233 12 6 7.6424 3.3237 0.9550 13 6 8.8508 3.6711 0.0825 14 6 8.6185 5.0293 -0.5852 15 6 7.3274 4.9715 -1.4062 16 1 7.4311 4.2270 -2.1956 17 6 7.0604 6.3217 -2.0199 18 1 6.5428 7.0803 -1.4517 19 6 7.4771 6.5885 -3.3068 20 7 7.3299 7.7951 -3.8089 21 14 8.2507 5.2362 -4.3375 22 1 7.1820 4.4438 -4.9971 23 1 9.1277 5.8421 -5.3714 24 1 9.0576 4.3476 -3.4630 25 6 6.1631 4.5864 -0.4905 26 6 4.0300 2.7461 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.5143 0.9670 2.1654 31 1 4.2486 -0.3873 1.2479 32 1 6.2524 0.8705 0.7835 33 1 5.8688 1.4034 2.4504 34 1 7.5235 4.0816 1.7292 35 1 7.7985 2.3504 1.4204 36 1 9.7458 3.7188 0.7027 37 1 8.9785 2.9062 -0.6835 38 1 8.5295 5.8008 0.1798 39 1 9.4579 5.2613 -1.2406 40 1 7.6227 7.9828 -4.7144 41 1 5.2446 4.5303 -1.0749 42 1 6.0512 5.3384 0.2905 43 1 3.2439 3.3854 0.4024 44 1 4.2833 3.0584 -1.0127 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170553669.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:12 Heat of formation + Delta-G solvation = -98.882751 kcal Electronic energy + Delta-G solvation = -22996.734058 eV Core-core repulsion = 19720.204882 eV Total energy + Delta-G solvation = -3276.529177 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.77184 -39.10921 -37.02864 -36.25705 -33.22105 -31.87367 -30.48079 -29.27938 -28.17237 -27.00681 -24.97444 -23.36361 -22.22220 -21.34428 -20.19103 -19.27838 -18.75588 -17.87644 -16.92496 -16.76968 -16.50359 -16.05424 -14.74173 -14.45616 -14.24092 -13.94723 -13.71463 -13.47648 -13.19683 -13.01244 -12.61035 -12.53023 -12.45285 -12.34623 -11.85854 -11.43347 -11.17705 -11.12705 -10.99436 -10.96387 -10.84105 -10.82925 -10.75337 -10.53630 -10.35893 -10.15996 -9.75843 -9.45888 -9.23567 -8.89150 -8.46707 -7.76905 -6.03952 -4.03188 2.11617 2.58778 3.34210 3.41780 3.45864 4.27737 4.41870 4.46438 4.47186 4.71002 4.89630 4.96947 5.12650 5.24703 5.28067 5.36528 5.40445 5.46069 5.49543 5.55948 5.59850 5.72355 5.76933 5.89944 5.94750 6.07751 6.16144 6.19077 6.21122 6.29748 6.34618 6.38605 6.44993 6.55710 6.75927 6.87326 6.95941 7.34844 7.51016 7.62467 7.65345 7.70755 7.91332 8.57230 9.01246 9.59915 11.09408 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019018 B = 0.004550 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.901826 B = 6152.408741 C = 7019.741606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.360 6.360 3 C 0.466 3.534 4 O -0.504 6.504 5 C -0.083 4.083 6 H 0.115 0.885 7 C -0.107 4.107 8 C -0.115 4.115 9 C 0.081 3.919 10 H 0.041 0.959 11 N -0.536 5.536 12 C 0.062 3.938 13 C -0.120 4.120 14 C -0.113 4.113 15 C 0.021 3.979 16 H 0.038 0.962 17 C -0.512 4.512 18 H 0.070 0.930 19 C 0.072 3.928 20 N -0.902 5.902 21 Si 0.879 3.121 22 H -0.276 1.276 23 H -0.292 1.292 24 H -0.263 1.263 25 C 0.067 3.933 26 C -0.113 4.113 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.025 0.975 35 H 0.063 0.937 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.051 0.949 40 H 0.263 0.737 41 H 0.072 0.928 42 H 0.023 0.977 43 H 0.082 0.918 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.036 -17.690 10.563 21.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.277 6.277 3 C 0.309 3.691 4 O -0.391 6.391 5 C -0.102 4.102 6 H 0.133 0.867 7 C -0.145 4.145 8 C -0.153 4.153 9 C -0.028 4.028 10 H 0.059 0.941 11 N -0.261 5.261 12 C -0.066 4.066 13 C -0.158 4.158 14 C -0.151 4.151 15 C 0.002 3.998 16 H 0.057 0.943 17 C -0.550 4.550 18 H 0.088 0.912 19 C -0.130 4.130 20 N -0.540 5.540 21 Si 0.706 3.294 22 H -0.202 1.202 23 H -0.219 1.219 24 H -0.187 1.187 25 C -0.059 4.059 26 C -0.150 4.150 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.043 0.957 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.041 0.959 43 H 0.100 0.900 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.162 -17.590 10.023 21.474 hybrid contribution -0.016 0.130 -0.044 0.139 sum -7.178 -17.459 9.979 21.353 Atomic orbital electron populations 1.23248 0.76702 1.03486 1.02552 1.86522 1.23169 1.33750 1.84227 1.23886 0.92211 0.81129 0.71836 1.90670 1.67091 1.36350 1.44967 1.21921 0.86060 1.00370 1.01868 0.86679 1.22424 0.96710 1.00369 0.94996 1.22458 0.96571 0.95260 1.01031 1.22188 0.90813 0.95534 0.94228 0.94102 1.62235 1.02007 1.29894 1.31943 1.21989 0.90928 0.99328 0.94345 1.21678 0.95665 0.99656 0.98775 1.21869 1.00324 0.93969 0.98924 1.19141 0.90080 0.96816 0.93761 0.94335 1.20977 1.37775 0.97261 0.99020 0.91164 1.25049 0.95038 0.95214 0.97676 1.69914 1.47900 1.20008 1.16209 0.86832 0.79840 0.82611 0.80079 1.20217 1.21873 1.18745 1.22339 1.00767 0.85973 0.96868 1.22340 0.96874 0.93019 1.02797 0.92019 0.91901 0.88243 0.91312 0.90266 0.89795 0.91562 0.95664 0.91844 0.93022 0.92034 0.93302 0.93041 0.92725 0.90996 0.95892 0.89967 0.88995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.99 10.57 -39.26 -0.41 -4.40 16 3 C 0.47 6.01 7.26 36.01 0.26 6.27 16 4 O -0.50 -7.99 15.17 -18.75 -0.28 -8.27 16 5 C -0.08 -0.97 3.36 -90.12 -0.30 -1.27 16 6 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 7 C -0.11 -1.04 6.32 -24.74 -0.16 -1.19 16 8 C -0.12 -1.25 5.15 -25.07 -0.13 -1.38 16 9 C 0.08 1.13 2.67 -66.59 -0.18 0.95 16 10 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 11 N -0.54 -8.97 4.44 -225.34 -1.00 -9.97 16 12 C 0.06 0.96 5.29 -3.83 -0.02 0.94 16 13 C -0.12 -2.04 6.09 -26.65 -0.16 -2.20 16 14 C -0.11 -2.37 5.27 -26.61 -0.14 -2.51 16 15 C 0.02 0.50 1.92 -91.69 -0.18 0.32 16 16 H 0.04 0.93 5.30 -51.93 -0.28 0.66 16 17 C -0.51 -14.30 8.87 -34.44 -0.31 -14.61 16 18 H 0.07 2.14 8.06 -52.49 -0.42 1.72 16 19 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 20 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 21 Si 0.88 21.77 26.99 -169.99 -4.59 17.18 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.26 -6.24 6.82 56.52 0.39 -5.85 16 25 C 0.07 1.37 4.44 -3.83 -0.02 1.35 16 26 C -0.11 -1.60 5.25 -25.62 -0.13 -1.73 16 27 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 28 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 29 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.65 8.05 -51.93 -0.42 0.24 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.94 7.85 -51.93 -0.41 0.53 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.83 6.84 -51.93 -0.36 0.48 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 39 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.07 1.49 5.98 -51.93 -0.31 1.18 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 1.25 6.85 -51.93 -0.36 0.90 16 44 H 0.09 1.47 6.19 -51.92 -0.32 1.15 16 LS Contribution 339.35 15.07 5.11 5.11 Total: -1.00 -31.50 339.35 -8.41 -39.91 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.51 Total: -0.89 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -0.49 Total: -11.74 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: -0.23 Total: -36.90 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -0.70 Total: -12.68 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.59 Total: 17.18 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.50 -8.41 -39.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170553669.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.974 kcal (2) G-P(sol) polarization free energy of solvation -31.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds