Wall clock time and date at job start Tue Mar 31 2020 06:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 116.99616 * 2 1 4 4 O 1.20824 * 120.00558 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00034 * 180.02562 * 3 2 1 6 6 H 1.09000 * 110.43863 * 57.45434 * 5 3 2 7 7 C 1.54273 * 110.59691 * 294.83852 * 5 3 2 8 8 C 1.53872 * 106.59900 * 217.65171 * 7 5 3 9 9 C 1.54263 * 106.60025 * 0.02562 * 8 7 5 10 10 H 1.08998 * 110.59970 * 264.87658 * 9 8 7 11 11 N 1.46895 * 110.48678 * 142.28288 * 9 8 7 12 12 C 1.46850 * 111.00178 * 58.20061 * 11 9 8 13 13 C 1.53032 * 109.52811 * 185.83504 * 12 11 9 14 14 C 1.53116 * 109.28238 * 300.82495 * 13 12 11 15 15 C 1.53124 * 109.16233 * 57.64899 * 14 13 12 16 16 H 1.09002 * 109.53186 * 62.30461 * 15 14 13 17 17 C 1.50695 * 109.50306 * 182.40687 * 15 14 13 18 18 H 1.08001 * 119.99960 * 119.80425 * 17 15 14 19 19 C 1.37877 * 119.99942 * 300.07722 * 17 15 14 20 20 N 1.31511 * 120.00011 * 359.73011 * 19 17 15 21 21 Si 1.86803 * 119.99883 * 179.72423 * 19 17 15 22 22 H 1.48505 * 109.46750 * 60.00022 * 21 19 17 23 23 H 1.48493 * 109.47072 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47113 * 300.00654 * 21 19 17 25 25 C 1.46846 * 110.99948 * 182.41022 * 11 9 8 26 26 C 1.54890 * 110.48919 * 180.02562 * 5 3 2 27 27 H 1.09006 * 109.47132 * 60.00197 * 1 2 3 28 28 H 1.09004 * 109.46698 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47066 * 299.99849 * 1 2 3 30 30 H 1.08997 * 110.03585 * 336.94327 * 7 5 3 31 31 H 1.09005 * 110.03182 * 98.37187 * 7 5 3 32 32 H 1.08998 * 110.03544 * 240.71616 * 8 7 5 33 33 H 1.09000 * 110.02853 * 119.28671 * 8 7 5 34 34 H 1.08998 * 109.46206 * 305.85929 * 12 11 9 35 35 H 1.09007 * 109.45956 * 65.82061 * 12 11 9 36 36 H 1.09009 * 109.50033 * 60.76135 * 13 12 11 37 37 H 1.08998 * 109.50409 * 180.83546 * 13 12 11 38 38 H 1.09001 * 109.52354 * 297.74955 * 14 13 12 39 39 H 1.08993 * 109.52631 * 177.55453 * 14 13 12 40 40 H 0.96998 * 119.99691 * 180.02562 * 20 19 17 41 41 H 1.08996 * 109.46627 * 54.14985 * 25 11 9 42 42 H 1.09000 * 109.45492 * 294.16847 * 25 11 9 43 43 H 1.08994 * 110.75455 * 38.43771 * 26 5 3 44 44 H 1.08998 * 110.90880 * 275.13544 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9748 0.7464 -0.8618 7 6 4.1405 0.6974 1.3096 8 6 5.3436 1.5787 1.6884 9 6 5.4582 2.6615 0.5956 10 1 6.1724 2.3593 -0.1703 11 7 5.8522 3.9477 1.1856 12 6 7.1307 3.8302 1.8984 13 6 7.4369 5.1446 2.6198 14 6 7.5052 6.2800 1.5947 15 6 6.1788 6.3498 0.8328 16 1 5.3710 6.5790 1.5278 17 6 6.2586 7.4263 -0.2187 18 1 6.1299 7.1738 -1.2609 19 6 6.5016 8.7326 0.1492 20 7 6.6584 9.0401 1.4182 21 14 6.6081 10.0658 -1.1550 22 1 5.3242 10.1351 -1.8980 23 1 6.8745 11.3740 -0.5048 24 1 7.7096 9.7480 -2.0988 25 6 5.9091 5.0003 0.1632 26 6 4.0316 2.7523 0.0002 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.3872 0.7357 2.0964 31 1 4.4658 -0.3312 1.1532 32 1 6.2527 0.9779 1.7159 33 1 5.1741 2.0448 2.6590 34 1 7.0673 3.0221 2.6271 35 1 7.9258 3.6138 1.1848 36 1 6.6492 5.3547 3.3434 37 1 8.3931 5.0620 3.1365 38 1 8.3181 6.0896 0.8939 39 1 7.6801 7.2250 2.1088 40 1 6.8289 9.9592 1.6770 41 1 4.9584 5.0422 -0.3682 42 1 6.7100 4.7784 -0.5421 43 1 3.3865 3.3602 0.6345 44 1 4.0611 3.1514 -1.0137 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170553671.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:17 Heat of formation + Delta-G solvation = -101.212114 kcal Electronic energy + Delta-G solvation = -22880.315715 eV Core-core repulsion = 19603.685530 eV Total energy + Delta-G solvation = -3276.630185 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.73153 -38.93489 -36.93424 -36.20448 -33.31823 -31.49484 -30.14743 -29.07515 -28.16104 -26.90873 -24.88687 -23.12849 -22.21567 -21.31831 -19.84087 -19.66714 -18.61769 -17.62305 -16.95285 -16.56201 -16.13387 -15.56575 -15.20043 -14.50738 -14.04136 -13.83827 -13.60687 -13.28979 -13.05373 -13.01571 -12.54109 -12.39309 -12.28629 -12.02071 -11.74045 -11.34466 -11.21180 -10.96117 -10.94479 -10.89203 -10.81065 -10.63885 -10.59474 -10.49058 -10.30776 -10.03066 -9.78274 -9.40294 -8.95932 -8.65383 -8.25384 -7.62198 -5.92839 -3.98776 2.14172 2.59243 3.35474 3.39953 3.42579 4.29400 4.41877 4.50296 4.53997 4.86911 4.91536 4.99268 5.05152 5.32288 5.36284 5.37103 5.40041 5.44312 5.56241 5.62237 5.78028 5.82355 5.87746 6.04281 6.09801 6.17323 6.25908 6.27532 6.35920 6.41635 6.52517 6.59233 6.76230 6.80627 7.03384 7.26799 7.45712 7.67662 7.72050 7.80143 7.89174 8.14371 8.22638 8.53304 9.05119 9.65197 11.13147 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021132 B = 0.004055 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.683059 B = 6903.714300 C = 7884.055673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.362 6.362 3 C 0.466 3.534 4 O -0.499 6.499 5 C -0.087 4.087 6 H 0.110 0.890 7 C -0.105 4.105 8 C -0.118 4.118 9 C 0.079 3.921 10 H 0.042 0.958 11 N -0.530 5.530 12 C 0.062 3.938 13 C -0.117 4.117 14 C -0.111 4.111 15 C 0.055 3.945 16 H 0.034 0.966 17 C -0.514 4.514 18 H 0.052 0.948 19 C 0.063 3.937 20 N -0.889 5.889 21 Si 0.890 3.110 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.278 1.278 25 C 0.066 3.934 26 C -0.098 4.098 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.021 0.979 36 H 0.060 0.940 37 H 0.045 0.955 38 H 0.029 0.971 39 H 0.090 0.910 40 H 0.260 0.740 41 H 0.061 0.939 42 H 0.017 0.983 43 H 0.095 0.905 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.350 -19.316 -0.215 20.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.279 6.279 3 C 0.309 3.691 4 O -0.385 6.385 5 C -0.106 4.106 6 H 0.128 0.872 7 C -0.143 4.143 8 C -0.156 4.156 9 C -0.030 4.030 10 H 0.060 0.940 11 N -0.255 5.255 12 C -0.066 4.066 13 C -0.155 4.155 14 C -0.149 4.149 15 C 0.036 3.964 16 H 0.052 0.948 17 C -0.553 4.553 18 H 0.071 0.929 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.718 3.282 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.204 1.204 25 C -0.060 4.060 26 C -0.136 4.136 27 H 0.080 0.920 28 H 0.117 0.883 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.039 0.961 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.048 0.952 39 H 0.108 0.892 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.036 0.964 43 H 0.113 0.887 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.901 -18.718 0.251 19.628 hybrid contribution 0.471 0.563 -1.389 1.571 sum -5.430 -18.155 -1.138 18.984 Atomic orbital electron populations 1.23247 0.76679 1.03443 1.02611 1.86516 1.23193 1.33825 1.84339 1.23800 0.92026 0.81183 0.72135 1.90700 1.67015 1.36286 1.44472 1.21937 0.86512 1.00603 1.01585 0.87223 1.22027 0.97953 0.99419 0.94893 1.22228 0.97048 0.96006 1.00282 1.22385 0.95341 0.90444 0.94780 0.94018 1.62117 1.30481 1.04050 1.28814 1.22035 0.89419 0.98444 0.96666 1.21673 0.99494 0.95254 0.99094 1.21653 0.98946 0.97788 0.96501 1.18653 0.94043 0.88846 0.94814 0.94775 1.21120 1.48819 0.92260 0.93126 0.92949 1.24926 0.95257 0.98449 0.95177 1.69882 1.49142 1.18664 1.15067 0.86700 0.78512 0.81127 0.81884 1.20304 1.21343 1.20422 1.22332 0.99090 0.92585 0.92039 1.22495 0.96330 0.92396 1.02364 0.91968 0.88278 0.91903 0.91333 0.90715 0.91760 0.90060 0.92208 0.96059 0.92123 0.93628 0.95249 0.89163 0.93052 0.92006 0.96449 0.88664 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -4.00 10.57 -39.25 -0.41 -4.42 16 3 C 0.47 6.06 7.12 36.01 0.26 6.31 16 4 O -0.50 -8.15 15.47 -18.75 -0.29 -8.44 16 5 C -0.09 -0.99 3.36 -90.11 -0.30 -1.30 16 6 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 7 C -0.10 -1.07 6.37 -25.61 -0.16 -1.23 16 8 C -0.12 -1.39 5.16 -25.62 -0.13 -1.52 16 9 C 0.08 1.16 2.58 -66.08 -0.17 0.99 16 10 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 11 N -0.53 -9.66 4.48 -224.74 -1.01 -10.67 16 12 C 0.06 1.08 5.24 -3.83 -0.02 1.06 16 13 C -0.12 -2.29 6.09 -26.65 -0.16 -2.46 16 14 C -0.11 -2.64 5.02 -26.61 -0.13 -2.78 16 15 C 0.06 1.40 2.26 -91.69 -0.21 1.19 16 16 H 0.03 0.97 8.14 -51.93 -0.42 0.54 16 17 C -0.51 -14.30 8.57 -34.44 -0.30 -14.60 16 18 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 19 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 20 N -0.89 -25.66 11.35 55.43 0.63 -25.03 16 21 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C 0.07 1.42 4.54 -3.83 -0.02 1.40 16 26 C -0.10 -1.42 4.39 -24.76 -0.11 -1.52 16 27 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 28 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16 30 H 0.07 0.72 7.83 -51.93 -0.41 0.31 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 1.05 7.58 -51.93 -0.39 0.65 16 34 H 0.06 0.89 6.62 -51.93 -0.34 0.55 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 40 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.06 1.33 6.82 -51.93 -0.35 0.97 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.09 1.63 7.47 -51.93 -0.39 1.24 16 44 H 0.07 1.06 7.81 -51.93 -0.41 0.66 16 LS Contribution 341.46 15.07 5.15 5.15 Total: -1.00 -30.50 341.46 -9.09 -39.59 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -7.65 Total: -1.28 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -0.48 Total: -11.43 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: -0.38 Total: -35.70 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -0.70 Total: -12.85 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.50 -9.09 -39.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170553671.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.625 kcal (2) G-P(sol) polarization free energy of solvation -30.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds