Wall clock time and date at job start Tue Mar 31 2020 06:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34237 * 116.99958 * 2 1 4 4 O 1.20822 * 119.99736 * 0.02562 * 3 2 1 5 5 C 1.50692 * 119.99892 * 180.02562 * 3 2 1 6 6 H 1.09000 * 110.44219 * 57.46130 * 5 3 2 7 7 C 1.54898 * 110.48555 * 294.77596 * 5 3 2 8 8 C 1.54890 * 102.74483 * 203.38104 * 7 5 3 9 9 C 1.54261 * 104.19851 * 37.94445 * 8 7 5 10 10 H 1.09006 * 110.07510 * 95.69582 * 9 8 7 11 11 N 1.46902 * 110.03169 * 217.10205 * 9 8 7 12 12 C 1.46856 * 110.99619 * 173.21408 * 11 9 8 13 13 C 1.53039 * 109.51787 * 185.84053 * 12 11 9 14 14 C 1.53123 * 109.31189 * 300.79882 * 13 12 11 15 15 C 1.53203 * 109.11533 * 57.63615 * 14 13 12 16 16 H 1.09007 * 109.52297 * 62.34418 * 15 14 13 17 17 C 1.50704 * 109.49061 * 182.41949 * 15 14 13 18 18 H 1.08001 * 119.99416 * 119.82791 * 17 15 14 19 19 C 1.37876 * 120.00304 * 299.82825 * 17 15 14 20 20 N 1.31509 * 119.99745 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 119.99981 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47437 * 59.99478 * 21 19 17 23 23 H 1.48496 * 109.47352 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46998 * 299.99890 * 21 19 17 25 25 C 1.46846 * 111.00121 * 297.42291 * 11 9 8 26 26 C 1.53876 * 106.59902 * 336.38717 * 9 8 7 27 27 H 1.08999 * 109.46747 * 299.99198 * 1 2 3 28 28 H 1.08993 * 109.47298 * 59.99434 * 1 2 3 29 29 H 1.09005 * 109.46465 * 179.97438 * 1 2 3 30 30 H 1.08992 * 110.75958 * 321.69509 * 7 5 3 31 31 H 1.09001 * 110.75495 * 84.88534 * 7 5 3 32 32 H 1.09000 * 110.49020 * 279.26371 * 8 7 5 33 33 H 1.09008 * 110.48319 * 156.62628 * 8 7 5 34 34 H 1.09000 * 109.46462 * 65.82793 * 12 11 9 35 35 H 1.09001 * 109.45242 * 305.84772 * 12 11 9 36 36 H 1.09002 * 109.50563 * 60.76214 * 13 12 11 37 37 H 1.09003 * 109.50107 * 180.84195 * 13 12 11 38 38 H 1.08994 * 109.52349 * 177.58253 * 14 13 12 39 39 H 1.08997 * 109.52263 * 297.77214 * 14 13 12 40 40 H 0.97008 * 119.99478 * 180.02562 * 20 19 17 41 41 H 1.09004 * 109.46012 * 294.17710 * 25 11 9 42 42 H 1.08997 * 109.46257 * 54.15030 * 25 11 9 43 43 H 1.08994 * 110.03086 * 119.28409 * 26 9 8 44 44 H 1.08997 * 110.02827 * 240.71334 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9749 0.7464 -0.8619 7 6 4.1400 0.6958 1.3165 8 6 5.5245 1.3827 1.4174 9 6 5.2749 2.8148 0.9012 10 1 5.0927 3.4880 1.7389 11 7 6.4329 3.2791 0.1256 12 6 6.1556 4.5736 -0.5100 13 6 7.3229 4.9554 -1.4231 14 6 8.6078 5.0383 -0.5944 15 6 8.8472 3.6919 0.0962 16 1 8.9880 2.9163 -0.6566 17 6 10.0778 3.7823 0.9615 18 1 10.0037 3.6108 2.0252 19 6 11.2981 4.0841 0.3952 20 7 11.3883 4.2925 -0.9001 21 14 12.8235 4.1955 1.4677 22 1 13.0525 2.8911 2.1397 23 1 13.9986 4.5300 0.6238 24 1 12.6320 5.2532 2.4922 25 6 7.6358 3.3467 0.9652 26 6 4.0298 2.7463 -0.0004 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 3.5112 0.9677 2.1643 31 1 4.2468 -0.3869 1.2482 32 1 6.2512 0.8710 0.7863 33 1 5.8652 1.4042 2.4526 34 1 6.0312 5.3364 0.2586 35 1 5.2420 4.5000 -1.1000 36 1 7.4392 4.2000 -2.2003 37 1 7.1236 5.9233 -1.8832 38 1 9.4489 5.2679 -1.2485 39 1 8.5062 5.8204 0.1580 40 1 12.2470 4.5045 -1.2986 41 1 7.5043 4.1152 1.7269 42 1 7.7972 2.3822 1.4466 43 1 3.2431 3.3855 0.4003 44 1 4.2848 3.0576 -1.0133 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170553672.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:20 Heat of formation + Delta-G solvation = -98.879658 kcal Electronic energy + Delta-G solvation = -22829.721655 eV Core-core repulsion = 19553.192613 eV Total energy + Delta-G solvation = -3276.529042 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.80298 -38.99437 -36.95113 -36.21419 -33.31357 -31.52538 -30.12772 -29.11999 -28.15796 -26.91420 -24.89304 -23.04619 -22.44213 -21.19986 -20.22371 -19.20403 -18.62706 -17.87714 -16.86151 -16.61263 -16.40425 -15.67571 -14.73235 -14.61531 -14.23058 -13.84048 -13.68564 -13.26007 -13.07209 -12.97015 -12.47815 -12.46865 -12.32009 -11.95047 -11.83865 -11.28192 -11.11736 -11.02313 -10.94708 -10.91238 -10.80357 -10.67789 -10.60832 -10.54943 -10.37567 -9.99711 -9.79374 -9.41542 -8.97767 -8.67145 -8.27372 -7.62311 -5.95125 -4.01192 2.06894 2.55760 3.33412 3.38259 3.40546 4.33514 4.44042 4.47390 4.56007 4.73458 4.85619 4.92611 5.15090 5.27149 5.34830 5.38735 5.47091 5.52177 5.57470 5.68647 5.79889 5.80952 5.90165 6.01551 6.13440 6.16675 6.21759 6.25358 6.38143 6.39111 6.49578 6.56838 6.76098 6.79668 7.01567 7.25844 7.44718 7.60294 7.71219 7.78226 7.88386 8.11655 8.20508 8.51158 9.02810 9.62932 11.10822 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.036710 B = 0.003480 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.542261 B = 8044.369197 C = 8515.271557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.468 3.532 4 O -0.509 6.509 5 C -0.083 4.083 6 H 0.116 0.884 7 C -0.107 4.107 8 C -0.115 4.115 9 C 0.080 3.920 10 H 0.039 0.961 11 N -0.531 5.531 12 C 0.058 3.942 13 C -0.117 4.117 14 C -0.111 4.111 15 C 0.056 3.944 16 H 0.034 0.966 17 C -0.515 4.515 18 H 0.052 0.948 19 C 0.063 3.937 20 N -0.888 5.888 21 Si 0.890 3.110 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.279 1.279 25 C 0.067 3.933 26 C -0.111 4.111 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.022 0.978 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.045 0.955 38 H 0.090 0.910 39 H 0.029 0.971 40 H 0.260 0.740 41 H 0.017 0.983 42 H 0.061 0.939 43 H 0.079 0.921 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.875 -7.160 1.451 19.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.311 3.689 4 O -0.396 6.396 5 C -0.103 4.103 6 H 0.134 0.866 7 C -0.145 4.145 8 C -0.152 4.152 9 C -0.029 4.029 10 H 0.057 0.943 11 N -0.256 5.256 12 C -0.070 4.070 13 C -0.155 4.155 14 C -0.149 4.149 15 C 0.037 3.963 16 H 0.052 0.948 17 C -0.554 4.554 18 H 0.070 0.930 19 C -0.138 4.138 20 N -0.527 5.527 21 Si 0.718 3.282 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.204 1.204 25 C -0.060 4.060 26 C -0.148 4.148 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.118 0.882 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.040 0.960 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.108 0.892 39 H 0.047 0.953 40 H 0.070 0.930 41 H 0.035 0.965 42 H 0.080 0.920 43 H 0.097 0.903 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.883 -7.149 0.941 19.282 hybrid contribution 0.426 0.818 1.197 1.511 sum -17.457 -6.331 2.139 18.692 Atomic orbital electron populations 1.23249 0.76726 1.03552 1.02456 1.86539 1.23142 1.33705 1.84114 1.23931 0.92253 0.81085 0.71592 1.90643 1.67179 1.36421 1.45378 1.21935 0.85868 1.00290 1.02159 0.86602 1.22444 0.96904 1.00541 0.94648 1.22441 0.96289 0.94951 1.01562 1.22201 0.90573 0.96047 0.94084 0.94325 1.62201 1.02932 1.27835 1.32609 1.22108 0.98477 0.89373 0.97044 1.21672 0.96195 0.99253 0.98347 1.21669 0.95473 0.99165 0.98588 1.18662 0.89794 0.93715 0.94118 0.94790 1.21122 0.92453 1.47779 0.94032 0.92960 1.24926 0.98712 0.95281 0.94888 1.69886 1.24823 1.48101 1.09909 0.86704 0.82642 0.78477 0.80410 1.20314 1.21346 1.20428 1.22315 0.89878 0.99175 0.94630 1.22336 0.97055 0.93183 1.02241 0.92016 0.91991 0.88189 0.91415 0.90174 0.89416 0.91321 0.96014 0.91976 0.92118 0.93645 0.89200 0.95256 0.93035 0.96495 0.92024 0.90279 0.89586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.84 10.57 -39.28 -0.41 -4.25 16 3 C 0.47 5.74 7.25 36.00 0.26 6.00 16 4 O -0.51 -7.52 15.17 -18.75 -0.28 -7.81 16 5 C -0.08 -0.95 3.36 -90.11 -0.30 -1.26 16 6 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 7 C -0.11 -1.14 6.32 -24.73 -0.16 -1.29 16 8 C -0.11 -1.47 5.17 -25.07 -0.13 -1.60 16 9 C 0.08 1.18 2.67 -66.60 -0.18 1.00 16 10 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 11 N -0.53 -9.50 4.44 -225.35 -1.00 -10.50 16 12 C 0.06 1.02 5.17 -3.83 -0.02 1.00 16 13 C -0.12 -2.29 6.09 -26.65 -0.16 -2.45 16 14 C -0.11 -2.63 5.03 -26.56 -0.13 -2.76 16 15 C 0.06 1.38 2.26 -91.65 -0.21 1.18 16 16 H 0.03 0.93 8.14 -51.92 -0.42 0.51 16 17 C -0.52 -14.04 8.56 -34.44 -0.29 -14.33 16 18 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 19 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 20 N -0.89 -25.30 11.36 55.43 0.63 -24.67 16 21 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.07 1.39 4.53 -3.84 -0.02 1.37 16 26 C -0.11 -1.46 5.26 -25.61 -0.13 -1.60 16 27 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 28 H 0.06 0.48 8.13 -51.93 -0.42 0.05 16 29 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.69 8.05 -51.93 -0.42 0.28 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 1.23 7.91 -51.93 -0.41 0.82 16 33 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.97 5.92 -51.93 -0.31 0.66 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.09 2.38 6.17 -51.93 -0.32 2.06 16 39 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 1.25 6.91 -51.93 -0.36 0.89 16 43 H 0.08 1.10 6.85 -51.93 -0.36 0.74 16 44 H 0.09 1.19 6.11 -51.93 -0.32 0.87 16 LS Contribution 339.73 15.07 5.12 5.12 Total: -1.00 -29.62 339.73 -9.00 -38.62 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.52 Total: -0.94 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -0.50 Total: -11.77 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: -0.37 Total: -35.17 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -0.70 Total: -12.06 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.62 -9.00 -38.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170553672.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.256 kcal (2) G-P(sol) polarization free energy of solvation -29.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds