Wall clock time and date at job start Tue Mar 31 2020 06:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34222 * 117.00056 * 2 1 4 4 O 1.20826 * 120.00480 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00015 * 180.27649 * 3 2 1 6 6 H 1.09000 * 110.01499 * 58.33839 * 5 3 2 7 7 C 1.54267 * 110.03440 * 296.89738 * 5 3 2 8 8 C 1.54896 * 104.19590 * 217.10327 * 7 5 3 9 9 C 1.54889 * 102.74696 * 37.94188 * 8 7 5 10 10 H 1.08998 * 110.48611 * 80.73477 * 9 8 7 11 11 N 1.46904 * 110.48628 * 203.37921 * 9 8 7 12 12 C 1.46851 * 110.99737 * 300.33308 * 11 9 8 13 13 C 1.53037 * 109.52285 * 174.15615 * 12 11 9 14 14 C 1.53125 * 109.27466 * 59.18148 * 13 12 11 15 15 C 1.50700 * 109.57400 * 182.40650 * 14 13 12 16 16 H 1.08008 * 119.99886 * 119.71304 * 15 14 13 17 17 C 1.37877 * 120.00335 * 299.71586 * 15 14 13 18 18 N 1.31520 * 119.99558 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00260 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47090 * 59.99894 * 19 17 15 21 21 H 1.48496 * 109.47021 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.46793 * 299.99888 * 19 17 15 23 23 C 1.53114 * 109.15979 * 302.34588 * 14 13 12 24 24 C 1.46846 * 110.99981 * 176.12582 * 11 9 8 25 25 C 1.53878 * 110.03500 * 179.72703 * 5 3 2 26 26 H 1.08996 * 109.46857 * 59.99073 * 1 2 3 27 27 H 1.08996 * 109.46989 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46683 * 299.99459 * 1 2 3 29 29 H 1.08996 * 110.48576 * 335.78023 * 7 5 3 30 30 H 1.08993 * 110.48888 * 98.42635 * 7 5 3 31 31 H 1.08993 * 110.75600 * 279.62377 * 8 7 5 32 32 H 1.08997 * 110.91461 * 156.32927 * 8 7 5 33 33 H 1.08993 * 109.46319 * 294.17643 * 12 11 9 34 34 H 1.09001 * 109.46173 * 54.14740 * 12 11 9 35 35 H 1.09000 * 109.50395 * 299.24164 * 13 12 11 36 36 H 1.08997 * 109.53724 * 179.14022 * 13 12 11 37 37 H 1.08994 * 109.52262 * 62.25055 * 14 13 12 38 38 H 0.97003 * 119.99534 * 180.02562 * 18 17 15 39 39 H 1.08997 * 109.50634 * 297.71145 * 23 14 13 40 40 H 1.09005 * 109.50279 * 177.59935 * 23 14 13 41 41 H 1.09000 * 109.46171 * 305.85030 * 24 11 9 42 42 H 1.08996 * 109.46434 * 65.82418 * 24 11 9 43 43 H 1.08997 * 110.03681 * 238.57036 * 25 5 3 44 44 H 1.08999 * 110.03184 * 0.02562 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5663 1.2748 -0.0063 6 1 3.9633 0.7594 -0.8809 7 6 4.1339 0.6449 1.2824 8 6 5.3455 1.5407 1.6414 9 6 4.8429 2.9588 1.2737 10 1 4.2141 3.3588 2.0691 11 7 5.9774 3.8550 1.0135 12 6 6.8453 3.9613 2.1933 13 6 8.0882 4.7821 1.8416 14 6 7.6582 6.1753 1.3740 15 6 8.8734 6.9696 0.9697 16 1 8.9661 7.3377 -0.0415 17 6 9.8669 7.2263 1.8906 18 7 9.7543 6.7775 3.1217 19 14 11.3736 8.2102 1.3893 20 1 10.9538 9.5583 0.9292 21 1 12.2860 8.3456 2.5530 22 1 12.0788 7.5082 0.2868 23 6 6.7167 6.0345 0.1748 24 6 5.5135 5.1774 0.5747 25 6 4.0171 2.7461 -0.0119 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 3.3907 0.6712 2.0793 30 1 4.4584 -0.3788 1.0958 31 1 6.2156 1.2718 1.0424 32 1 5.5757 1.4761 2.7048 33 1 6.3022 4.4524 3.0007 34 1 7.1473 2.9640 2.5130 35 1 8.6392 4.2843 1.0437 36 1 8.7252 4.8740 2.7213 37 1 7.1410 6.6882 2.1848 38 1 10.4531 6.9584 3.7696 39 1 7.2460 5.5565 -0.6495 40 1 6.3733 7.0212 -0.1362 41 1 4.8483 5.0633 -0.2812 42 1 4.9767 5.6629 1.3897 43 1 4.6335 2.9444 -0.8887 44 1 3.1474 3.4030 -0.0096 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170554529.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:32 Heat of formation + Delta-G solvation = -101.045523 kcal Electronic energy + Delta-G solvation = -22743.401117 eV Core-core repulsion = 19466.778156 eV Total energy + Delta-G solvation = -3276.622961 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.88164 -38.94788 -37.01456 -36.26180 -33.45265 -31.23106 -30.07906 -29.16269 -28.17681 -27.18668 -25.07496 -22.87663 -21.95515 -21.62472 -20.17535 -19.37055 -18.60339 -17.91540 -16.89501 -16.62520 -16.39672 -15.80116 -14.81823 -14.56608 -14.20067 -13.92818 -13.62248 -13.35705 -13.12103 -12.89701 -12.50005 -12.44016 -12.36835 -11.94418 -11.78681 -11.48219 -11.15500 -11.04950 -10.93023 -10.85869 -10.79443 -10.71108 -10.64741 -10.41932 -10.31515 -10.14285 -9.89588 -9.37149 -8.88623 -8.65532 -8.24890 -7.70560 -5.93291 -3.98402 2.03067 2.50697 3.35389 3.39709 3.42716 4.24477 4.43080 4.48230 4.53153 4.63043 4.82693 4.89952 5.11270 5.22623 5.33158 5.36298 5.38288 5.46255 5.53152 5.62764 5.76322 5.86414 5.93712 6.00063 6.10264 6.14683 6.18283 6.24708 6.30293 6.39256 6.41461 6.66380 6.69749 6.91705 7.14030 7.22369 7.49827 7.56322 7.67600 7.76941 7.88683 8.10381 8.20907 8.53055 9.05157 9.65648 11.12846 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.048536 B = 0.003219 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.755009 B = 8696.740348 C = 9009.258434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.466 3.534 4 O -0.505 6.505 5 C -0.083 4.083 6 H 0.112 0.888 7 C -0.108 4.108 8 C -0.115 4.115 9 C 0.078 3.922 10 H 0.041 0.959 11 N -0.526 5.526 12 C 0.057 3.943 13 C -0.103 4.103 14 C 0.048 3.952 15 C -0.510 4.510 16 H 0.053 0.947 17 C 0.060 3.940 18 N -0.893 5.893 19 Si 0.890 3.110 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.106 4.106 24 C 0.058 3.942 25 C -0.114 4.114 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.020 0.980 34 H 0.057 0.943 35 H 0.043 0.957 36 H 0.091 0.909 37 H 0.019 0.981 38 H 0.259 0.741 39 H 0.056 0.944 40 H 0.048 0.952 41 H 0.059 0.941 42 H 0.022 0.978 43 H 0.088 0.912 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.553 -14.988 -4.106 21.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.309 3.691 4 O -0.392 6.392 5 C -0.102 4.102 6 H 0.130 0.870 7 C -0.146 4.146 8 C -0.153 4.153 9 C -0.031 4.031 10 H 0.059 0.941 11 N -0.251 5.251 12 C -0.071 4.071 13 C -0.142 4.142 14 C 0.029 3.971 15 C -0.548 4.548 16 H 0.072 0.928 17 C -0.140 4.140 18 N -0.532 5.532 19 Si 0.718 3.282 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.144 4.144 24 C -0.070 4.070 25 C -0.152 4.152 26 H 0.080 0.920 27 H 0.118 0.882 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.039 0.961 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.110 0.890 37 H 0.038 0.962 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.040 0.960 43 H 0.106 0.894 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.411 -14.877 -4.307 21.156 hybrid contribution 0.039 0.949 0.457 1.054 sum -14.372 -13.928 -3.850 20.381 Atomic orbital electron populations 1.23259 0.76627 1.03569 1.02541 1.86525 1.23219 1.33643 1.84171 1.23932 0.92387 0.81124 0.71702 1.90649 1.67044 1.36348 1.45187 1.21720 0.86230 1.00155 1.02104 0.87014 1.22281 0.97926 0.99576 0.94830 1.22576 0.97595 0.93528 1.01600 1.22432 0.91759 0.93504 0.95398 0.94148 1.62151 1.16689 1.11192 1.35091 1.22281 0.95596 0.99466 0.89721 1.21653 0.94381 0.95680 1.02459 1.18677 0.93429 0.92815 0.92162 1.21185 1.03861 1.33017 0.96723 0.92849 1.24968 0.98204 0.95887 0.94980 1.69874 1.34061 1.46050 1.03222 0.86700 0.82959 0.80674 0.77888 1.20408 1.21409 1.20327 1.21673 0.95294 0.96704 1.00688 1.22137 0.97722 0.88807 0.98300 1.22316 1.00469 0.92672 0.99707 0.91959 0.88169 0.91951 0.91433 0.90175 0.89714 0.91215 0.96143 0.92408 0.93847 0.89036 0.96248 0.93098 0.92517 0.93311 0.92247 0.95954 0.89384 0.89708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.68 10.55 -39.24 -0.41 -4.09 16 3 C 0.47 5.54 7.10 36.00 0.26 5.79 16 4 O -0.51 -7.45 14.96 -18.75 -0.28 -7.73 16 5 C -0.08 -0.88 3.41 -90.65 -0.31 -1.19 16 6 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 7 C -0.11 -1.06 6.34 -25.07 -0.16 -1.22 16 8 C -0.12 -1.38 5.20 -24.74 -0.13 -1.51 16 9 C 0.08 1.13 2.58 -66.05 -0.17 0.96 16 10 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 11 N -0.53 -9.25 4.48 -224.71 -1.01 -10.26 16 12 C 0.06 1.10 5.29 -3.83 -0.02 1.08 16 13 C -0.10 -2.44 5.13 -26.65 -0.14 -2.58 16 14 C 0.05 1.20 2.16 -91.65 -0.20 1.00 16 15 C -0.51 -14.12 8.56 -34.44 -0.29 -14.42 16 16 H 0.05 1.46 7.75 -52.48 -0.41 1.06 16 17 C 0.06 1.68 5.31 -17.82 -0.09 1.58 16 18 N -0.89 -25.59 11.37 55.43 0.63 -24.96 16 19 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C -0.11 -2.26 5.32 -26.65 -0.14 -2.40 16 24 C 0.06 1.07 5.29 -3.83 -0.02 1.05 16 25 C -0.11 -1.48 4.80 -25.61 -0.12 -1.60 16 26 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 27 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 29 H 0.07 0.67 7.85 -51.93 -0.41 0.26 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.82 7.81 -51.93 -0.41 0.41 16 33 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 1.02 6.71 -51.93 -0.35 0.67 16 35 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 2.40 6.17 -51.93 -0.32 2.08 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.98 6.83 -51.93 -0.35 0.63 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.09 1.16 7.78 -51.93 -0.40 0.75 16 44 H 0.08 1.21 6.40 -51.93 -0.33 0.88 16 LS Contribution 340.69 15.07 5.13 5.13 Total: -1.00 -30.14 340.69 -9.04 -39.18 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -7.61 Total: -1.60 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -0.47 Total: -12.11 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: -0.38 Total: -35.22 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: -0.69 Total: -11.82 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.14 -9.04 -39.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170554529.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.866 kcal (2) G-P(sol) polarization free energy of solvation -30.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds