Wall clock time and date at job start Tue Mar 31 2020 06:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34223 * 116.99728 * 2 1 4 4 O 1.20818 * 120.00195 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99658 * 180.02562 * 3 2 1 6 6 H 1.09000 * 110.43911 * 57.45861 * 5 3 2 7 7 C 1.54263 * 110.48793 * 294.77174 * 5 3 2 8 8 C 1.54082 * 106.62370 * 217.60482 * 7 5 3 9 9 C 1.54268 * 106.49578 * 0.17143 * 8 7 5 10 10 H 1.09007 * 110.48689 * 264.71499 * 9 8 7 11 11 N 1.46895 * 110.49059 * 142.19885 * 9 8 7 12 12 C 1.46847 * 110.99982 * 73.24016 * 11 9 8 13 13 C 1.53034 * 109.51345 * 185.84805 * 12 11 9 14 14 C 1.53123 * 109.27992 * 300.80438 * 13 12 11 15 15 C 1.50693 * 109.57574 * 177.60215 * 14 13 12 16 16 H 1.08007 * 120.00278 * 240.29676 * 15 14 13 17 17 C 1.37885 * 120.00186 * 60.30132 * 15 14 13 18 18 N 1.31511 * 119.99511 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00097 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47217 * 89.99372 * 19 17 15 21 21 H 1.48501 * 109.46471 * 209.99753 * 19 17 15 22 22 H 1.48504 * 109.46763 * 329.99466 * 19 17 15 23 23 C 1.53127 * 109.15019 * 57.67185 * 14 13 12 24 24 C 1.46843 * 110.99970 * 197.45381 * 11 9 8 25 25 C 1.54888 * 104.31112 * 23.45096 * 9 8 7 26 26 H 1.09001 * 109.47426 * 60.00146 * 1 2 3 27 27 H 1.09006 * 109.47218 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47409 * 299.99704 * 1 2 3 29 29 H 1.09007 * 110.03135 * 336.99750 * 7 5 3 30 30 H 1.08997 * 110.03528 * 98.37614 * 7 5 3 31 31 H 1.09004 * 110.15968 * 240.88112 * 8 7 5 32 32 H 1.09003 * 110.01271 * 119.38245 * 8 7 5 33 33 H 1.09002 * 109.46481 * 305.85957 * 12 11 9 34 34 H 1.08994 * 109.46283 * 65.83811 * 12 11 9 35 35 H 1.08997 * 109.50952 * 60.75924 * 13 12 11 36 36 H 1.08998 * 109.50459 * 180.87821 * 13 12 11 37 37 H 1.09003 * 109.53012 * 297.76758 * 14 13 12 38 38 H 0.96998 * 119.99701 * 180.02562 * 18 17 15 39 39 H 1.08997 * 109.49981 * 182.39822 * 23 14 13 40 40 H 1.08998 * 109.53089 * 62.30397 * 23 14 13 41 41 H 1.08993 * 109.46313 * 294.17341 * 24 11 9 42 42 H 1.09000 * 109.46480 * 54.15451 * 24 11 9 43 43 H 1.09007 * 110.75539 * 80.43699 * 25 9 8 44 44 H 1.08996 * 110.76013 * 203.80913 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9748 0.7463 -0.8619 7 6 4.1377 0.6982 1.3112 8 6 5.3434 1.5789 1.6915 9 6 5.4572 2.6615 0.5984 10 1 6.1733 2.3584 -0.1655 11 7 5.8500 3.9483 1.1880 12 6 7.2637 3.9355 1.5852 13 6 7.5987 5.2328 2.3245 14 6 7.3184 6.4252 1.4057 15 6 7.5901 7.7087 2.1470 16 1 6.7967 8.4271 2.2919 17 6 8.8517 7.9663 2.6402 18 7 9.8177 7.0914 2.4641 19 14 9.1883 9.5570 3.5598 20 1 8.9336 9.3547 5.0087 21 1 10.6044 9.9557 3.3570 22 1 8.2946 10.6252 3.0445 23 6 5.8516 6.3879 0.9676 24 6 5.5670 5.0570 0.2677 25 6 4.0317 2.7522 -0.0006 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 3.3825 0.7371 2.0963 30 1 4.4623 -0.3308 1.1565 31 1 6.2530 0.9790 1.7190 32 1 5.1734 2.0449 2.6622 33 1 7.4489 3.0852 2.2416 34 1 7.8898 3.8516 0.6969 35 1 6.9827 5.3108 3.2203 36 1 8.6518 5.2300 2.6056 37 1 7.9623 6.3682 0.5280 38 1 10.7051 7.2724 2.8114 39 1 5.6564 7.2102 0.2793 40 1 5.2077 6.4845 1.8418 41 1 6.2010 4.9677 -0.6143 42 1 4.5198 5.0215 -0.0326 43 1 3.3851 3.3608 0.6316 44 1 4.0637 3.1471 -1.0159 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170554530.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:34 Heat of formation + Delta-G solvation = -101.125704 kcal Electronic energy + Delta-G solvation = -22733.575152 eV Core-core repulsion = 19456.948714 eV Total energy + Delta-G solvation = -3276.626438 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.82114 -38.98128 -36.97966 -36.27103 -33.45528 -31.22905 -30.08613 -29.22754 -28.13207 -27.19032 -25.09145 -22.98274 -21.83895 -21.66181 -19.92584 -19.71739 -18.59041 -17.69414 -17.03345 -16.60904 -16.25901 -15.64256 -15.25159 -14.47203 -14.13590 -13.87108 -13.69359 -13.32147 -13.08490 -12.87621 -12.56130 -12.45928 -12.30714 -11.99645 -11.78385 -11.52939 -11.15428 -11.04964 -10.93052 -10.88980 -10.87264 -10.70205 -10.58011 -10.38816 -10.30865 -10.14451 -9.90772 -9.37217 -8.87964 -8.65484 -8.25304 -7.70404 -5.93554 -3.98407 2.04914 2.51479 3.34037 3.40488 3.44155 4.23594 4.37627 4.45623 4.48909 4.80501 4.84583 4.92296 4.98511 5.26322 5.31639 5.33530 5.36650 5.37853 5.48934 5.60192 5.76495 5.84915 5.91558 5.99803 6.11007 6.17201 6.17930 6.24831 6.26776 6.39210 6.42025 6.65915 6.69629 6.92079 7.14462 7.22345 7.49527 7.58364 7.67623 7.76403 7.88672 8.10236 8.20628 8.53253 9.05378 9.65715 11.12653 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.040261 B = 0.003291 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.300674 B = 8506.340467 C = 8864.873833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.361 6.361 3 C 0.468 3.532 4 O -0.502 6.502 5 C -0.087 4.087 6 H 0.111 0.889 7 C -0.105 4.105 8 C -0.115 4.115 9 C 0.078 3.922 10 H 0.044 0.956 11 N -0.527 5.527 12 C 0.058 3.942 13 C -0.104 4.104 14 C 0.048 3.952 15 C -0.509 4.509 16 H 0.054 0.946 17 C 0.060 3.940 18 N -0.893 5.893 19 Si 0.889 3.111 20 H -0.281 1.281 21 H -0.288 1.288 22 H -0.275 1.275 23 C -0.106 4.106 24 C 0.057 3.943 25 C -0.102 4.102 26 H 0.061 0.939 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.021 0.979 35 H 0.043 0.957 36 H 0.092 0.908 37 H 0.020 0.980 38 H 0.258 0.742 39 H 0.048 0.952 40 H 0.056 0.944 41 H 0.022 0.978 42 H 0.062 0.938 43 H 0.094 0.906 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.805 -16.384 -5.035 21.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.277 6.277 3 C 0.310 3.690 4 O -0.389 6.389 5 C -0.107 4.107 6 H 0.129 0.871 7 C -0.143 4.143 8 C -0.153 4.153 9 C -0.031 4.031 10 H 0.062 0.938 11 N -0.252 5.252 12 C -0.069 4.069 13 C -0.142 4.142 14 C 0.029 3.971 15 C -0.547 4.547 16 H 0.072 0.928 17 C -0.141 4.141 18 N -0.532 5.532 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.200 1.200 23 C -0.144 4.144 24 C -0.071 4.071 25 C -0.139 4.139 26 H 0.080 0.920 27 H 0.118 0.882 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.040 0.960 35 H 0.061 0.939 36 H 0.110 0.890 37 H 0.038 0.962 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.040 0.960 42 H 0.080 0.920 43 H 0.112 0.888 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.118 -16.025 -4.571 21.208 hybrid contribution 0.508 0.714 -0.280 0.920 sum -12.610 -15.311 -4.851 20.420 Atomic orbital electron populations 1.23254 0.76608 1.03538 1.02576 1.86521 1.23241 1.33745 1.84224 1.23802 0.92026 0.81185 0.71966 1.90679 1.67078 1.36348 1.44789 1.21941 0.86502 1.00443 1.01804 0.87132 1.22077 0.98034 0.99587 0.94649 1.22217 0.96926 0.95839 1.00335 1.22435 0.94852 0.91036 0.94778 0.93781 1.62125 1.21337 1.01080 1.40642 1.22274 0.85820 1.00520 0.98316 1.21656 1.02976 0.91581 0.98001 1.18682 0.89732 0.93791 0.94866 1.21227 0.95242 1.03232 1.34995 0.92793 1.24969 0.96307 0.96566 0.96215 1.69877 1.01911 1.34869 1.46567 0.86641 0.77296 0.84092 0.80239 1.20755 1.21362 1.20012 1.21680 1.00576 0.93121 0.99056 1.22177 0.99144 0.92333 0.93427 1.22589 0.96580 0.92798 1.01961 0.91974 0.88204 0.91893 0.91341 0.90657 0.91609 0.89910 0.92593 0.96045 0.93852 0.89018 0.96222 0.93161 0.93292 0.92516 0.95971 0.91952 0.88782 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.73 10.57 -39.24 -0.41 -4.14 16 3 C 0.47 5.61 7.11 36.01 0.26 5.86 16 4 O -0.50 -7.53 15.47 -18.74 -0.29 -7.82 16 5 C -0.09 -0.92 3.36 -90.11 -0.30 -1.22 16 6 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 7 C -0.11 -1.04 6.37 -25.51 -0.16 -1.21 16 8 C -0.12 -1.38 5.72 -25.50 -0.15 -1.52 16 9 C 0.08 1.09 2.62 -66.06 -0.17 0.91 16 10 H 0.04 0.61 8.10 -51.93 -0.42 0.19 16 11 N -0.53 -9.27 4.48 -224.71 -1.01 -10.27 16 12 C 0.06 1.12 5.35 -3.84 -0.02 1.10 16 13 C -0.10 -2.46 5.12 -26.65 -0.14 -2.59 16 14 C 0.05 1.20 2.16 -91.65 -0.20 1.00 16 15 C -0.51 -14.14 8.56 -34.44 -0.29 -14.43 16 16 H 0.05 1.49 7.75 -52.48 -0.41 1.09 16 17 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 18 N -0.89 -25.58 11.37 55.43 0.63 -24.95 16 19 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 23 C -0.11 -2.29 5.32 -26.64 -0.14 -2.43 16 24 C 0.06 1.04 5.11 -3.83 -0.02 1.02 16 25 C -0.10 -1.31 3.81 -24.74 -0.09 -1.40 16 26 H 0.06 0.47 8.13 -51.93 -0.42 0.04 16 27 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 29 H 0.07 0.70 7.83 -51.93 -0.41 0.29 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 1.11 8.04 -51.93 -0.42 0.70 16 33 H 0.06 0.99 7.46 -51.93 -0.39 0.60 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.09 2.41 6.17 -51.93 -0.32 2.09 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 1.03 6.27 -51.93 -0.33 0.71 16 43 H 0.09 1.42 7.15 -51.93 -0.37 1.05 16 44 H 0.07 0.89 7.91 -51.93 -0.41 0.47 16 LS Contribution 341.91 15.07 5.15 5.15 Total: -1.00 -30.28 341.91 -9.09 -39.36 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -7.67 Total: -1.83 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -0.46 Total: -12.00 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: -0.38 Total: -35.22 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -0.70 Total: -11.96 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.28 -9.09 -39.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170554530.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.761 kcal (2) G-P(sol) polarization free energy of solvation -30.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds