Wall clock time and date at job start Tue Mar 31 2020 06:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34223 * 116.99728 * 2 1 4 4 O 1.20818 * 120.00195 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99658 * 180.02562 * 3 2 1 6 6 H 1.09000 * 110.43911 * 57.45861 * 5 3 2 7 7 C 1.54263 * 110.48793 * 294.77174 * 5 3 2 8 8 C 1.54082 * 106.62370 * 217.60482 * 7 5 3 9 9 C 1.54268 * 106.49578 * 0.17143 * 8 7 5 10 10 H 1.09007 * 110.48689 * 264.71499 * 9 8 7 11 11 N 1.46895 * 110.49059 * 142.19885 * 9 8 7 12 12 C 1.46847 * 110.99982 * 73.24016 * 11 9 8 13 13 C 1.53034 * 109.51345 * 185.84805 * 12 11 9 14 14 C 1.53123 * 109.27992 * 300.80438 * 13 12 11 15 15 C 1.50693 * 109.57574 * 177.60215 * 14 13 12 16 16 H 1.08007 * 120.00278 * 240.29676 * 15 14 13 17 17 C 1.37885 * 120.00186 * 60.30132 * 15 14 13 18 18 N 1.31511 * 119.99511 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00097 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47217 * 89.99372 * 19 17 15 21 21 H 1.48501 * 109.46471 * 209.99753 * 19 17 15 22 22 H 1.48504 * 109.46763 * 329.99466 * 19 17 15 23 23 C 1.53127 * 109.15019 * 57.67185 * 14 13 12 24 24 C 1.46843 * 110.99970 * 197.45381 * 11 9 8 25 25 C 1.54888 * 104.31112 * 23.45096 * 9 8 7 26 26 H 1.09001 * 109.47426 * 60.00146 * 1 2 3 27 27 H 1.09006 * 109.47218 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47409 * 299.99704 * 1 2 3 29 29 H 1.09007 * 110.03135 * 336.99750 * 7 5 3 30 30 H 1.08997 * 110.03528 * 98.37614 * 7 5 3 31 31 H 1.09004 * 110.15968 * 240.88112 * 8 7 5 32 32 H 1.09003 * 110.01271 * 119.38245 * 8 7 5 33 33 H 1.09002 * 109.46481 * 305.85957 * 12 11 9 34 34 H 1.08994 * 109.46283 * 65.83811 * 12 11 9 35 35 H 1.08997 * 109.50952 * 60.75924 * 13 12 11 36 36 H 1.08998 * 109.50459 * 180.87821 * 13 12 11 37 37 H 1.09003 * 109.53012 * 297.76758 * 14 13 12 38 38 H 0.96998 * 119.99701 * 180.02562 * 18 17 15 39 39 H 1.08997 * 109.49981 * 182.39822 * 23 14 13 40 40 H 1.08998 * 109.53089 * 62.30397 * 23 14 13 41 41 H 1.08993 * 109.46313 * 294.17341 * 24 11 9 42 42 H 1.09000 * 109.46480 * 54.15451 * 24 11 9 43 43 H 1.09007 * 110.75539 * 80.43699 * 25 9 8 44 44 H 1.08996 * 110.76013 * 203.80913 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9748 0.7463 -0.8619 7 6 4.1377 0.6982 1.3112 8 6 5.3434 1.5789 1.6915 9 6 5.4572 2.6615 0.5984 10 1 6.1733 2.3584 -0.1655 11 7 5.8500 3.9483 1.1880 12 6 7.2637 3.9355 1.5852 13 6 7.5987 5.2328 2.3245 14 6 7.3184 6.4252 1.4057 15 6 7.5901 7.7087 2.1470 16 1 6.7967 8.4271 2.2919 17 6 8.8517 7.9663 2.6402 18 7 9.8177 7.0914 2.4641 19 14 9.1883 9.5570 3.5598 20 1 8.9336 9.3547 5.0087 21 1 10.6044 9.9557 3.3570 22 1 8.2946 10.6252 3.0445 23 6 5.8516 6.3879 0.9676 24 6 5.5670 5.0570 0.2677 25 6 4.0317 2.7522 -0.0006 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 3.3825 0.7371 2.0963 30 1 4.4623 -0.3308 1.1565 31 1 6.2530 0.9790 1.7190 32 1 5.1734 2.0449 2.6622 33 1 7.4489 3.0852 2.2416 34 1 7.8898 3.8516 0.6969 35 1 6.9827 5.3108 3.2203 36 1 8.6518 5.2300 2.6056 37 1 7.9623 6.3682 0.5280 38 1 10.7051 7.2724 2.8114 39 1 5.6564 7.2102 0.2793 40 1 5.2077 6.4845 1.8418 41 1 6.2010 4.9677 -0.6143 42 1 4.5198 5.0215 -0.0326 43 1 3.3851 3.3608 0.6316 44 1 4.0637 3.1471 -1.0159 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170554530.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:33 Heat of formation + Delta-G solvation = -118.460606 kcal Electronic energy + Delta-G solvation = -22734.326850 eV Core-core repulsion = 19456.948714 eV Total energy + Delta-G solvation = -3277.378136 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.73011 -40.26742 -38.17389 -37.33219 -35.24784 -32.99018 -31.66011 -30.27611 -29.20727 -28.24648 -26.81265 -24.27845 -23.53494 -22.92340 -20.88732 -20.81753 -20.36768 -18.63854 -18.43470 -17.90810 -17.43865 -16.79633 -16.50578 -16.23070 -15.53873 -14.98118 -14.82868 -14.59173 -14.51812 -14.24540 -14.07481 -14.03272 -13.38274 -13.11786 -13.09907 -12.85182 -12.69681 -12.49417 -12.39651 -12.14504 -12.02675 -11.92863 -11.86184 -11.78686 -11.74472 -11.56030 -11.35708 -11.18659 -10.74935 -10.61996 -10.35638 -9.12739 -8.07385 -6.20402 1.15311 1.40855 1.41482 1.51671 1.74206 2.44152 3.01613 3.19260 3.42516 3.52474 3.92867 4.13144 4.24904 4.26804 4.31839 4.33167 4.34521 4.43112 4.46540 4.50025 4.53892 4.63366 4.69827 4.73601 4.78934 4.89688 4.95432 4.98278 5.10445 5.12675 5.20959 5.23971 5.29047 5.35929 5.39810 5.41175 5.58368 5.65201 6.02785 6.05431 6.34498 6.41490 6.44008 6.71890 6.90786 7.46963 8.97154 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.040261 B = 0.003291 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.300674 B = 8506.340467 C = 8864.873833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.359 6.359 3 C 0.470 3.530 4 O -0.540 6.540 5 C -0.081 4.081 6 H 0.140 0.860 7 C -0.097 4.097 8 C -0.112 4.112 9 C 0.075 3.925 10 H 0.054 0.946 11 N -0.535 5.535 12 C 0.071 3.929 13 C -0.095 4.095 14 C 0.045 3.955 15 C -0.534 4.534 16 H 0.048 0.952 17 C 0.013 3.987 18 N -0.917 5.917 19 Si 0.952 3.048 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.271 1.271 23 C -0.100 4.100 24 C 0.065 3.935 25 C -0.100 4.100 26 H 0.060 0.940 27 H 0.133 0.867 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.015 0.985 35 H 0.028 0.972 36 H 0.062 0.938 37 H -0.011 1.011 38 H 0.260 0.740 39 H 0.049 0.951 40 H 0.047 0.953 41 H 0.022 0.978 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.614 -18.249 -5.384 23.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C 0.314 3.686 4 O -0.430 6.430 5 C -0.100 4.100 6 H 0.158 0.842 7 C -0.135 4.135 8 C -0.150 4.150 9 C -0.033 4.033 10 H 0.072 0.928 11 N -0.260 5.260 12 C -0.056 4.056 13 C -0.133 4.133 14 C 0.027 3.973 15 C -0.572 4.572 16 H 0.066 0.934 17 C -0.186 4.186 18 N -0.556 5.556 19 Si 0.778 3.222 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.195 1.195 23 C -0.138 4.138 24 C -0.063 4.063 25 C -0.137 4.137 26 H 0.079 0.921 27 H 0.151 0.849 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.122 0.878 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.034 0.966 35 H 0.047 0.953 36 H 0.080 0.920 37 H 0.007 0.993 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.040 0.960 42 H 0.101 0.899 43 H 0.088 0.912 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.940 -17.918 -4.924 23.230 hybrid contribution 0.714 1.276 -0.180 1.473 sum -13.226 -16.642 -5.103 21.862 Atomic orbital electron populations 1.23540 0.75109 1.05693 1.02319 1.86509 1.24717 1.32655 1.83633 1.24046 0.92531 0.81086 0.70897 1.90672 1.67965 1.37618 1.46697 1.21948 0.85757 0.98927 1.03390 0.84218 1.22040 0.96860 1.00552 0.93999 1.22198 0.98661 0.95545 0.98620 1.22569 0.95518 0.89437 0.95756 0.92760 1.62062 1.19793 1.02809 1.41354 1.22017 0.87040 0.98658 0.97919 1.21414 1.00758 0.93556 0.97616 1.18650 0.91427 0.93629 0.93644 1.21587 0.95497 1.04393 1.35731 0.93396 1.25726 0.96124 0.99734 0.96988 1.70007 1.02159 1.36357 1.47104 0.85646 0.77252 0.80272 0.79021 1.20159 1.20766 1.19537 1.21552 0.97818 0.95465 0.99001 1.22053 1.00308 0.90945 0.92949 1.22487 0.95358 0.94416 1.01482 0.92100 0.84865 0.92378 0.91783 0.87790 0.90093 0.91698 0.90507 0.96644 0.95297 0.91982 0.99337 0.93059 0.93197 0.93400 0.96017 0.89893 0.91233 0.90646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.54 16 2 O -0.36 -6.51 10.57 -51.35 -0.54 -7.05 16 3 C 0.47 10.37 7.11 71.24 0.51 10.87 16 4 O -0.54 -15.77 15.47 21.99 0.34 -15.43 16 5 C -0.08 -1.48 3.36 -10.46 -0.04 -1.51 16 6 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 7 C -0.10 -1.60 6.37 31.39 0.20 -1.40 16 8 C -0.11 -2.40 5.72 31.39 0.18 -2.22 16 9 C 0.08 1.94 2.62 45.99 0.12 2.06 16 10 H 0.05 1.34 8.10 -2.38 -0.02 1.32 16 11 N -0.54 -18.40 4.48 -864.86 -3.87 -22.27 16 12 C 0.07 2.75 5.35 86.32 0.46 3.21 16 13 C -0.10 -4.63 5.12 30.65 0.16 -4.47 16 14 C 0.05 2.34 2.16 -11.46 -0.02 2.31 16 15 C -0.53 -30.52 8.56 25.60 0.22 -30.30 16 16 H 0.05 2.72 7.75 -2.91 -0.02 2.69 16 17 C 0.01 0.72 5.31 84.66 0.45 1.17 16 18 N -0.92 -53.72 11.37 21.45 0.24 -53.48 16 19 Si 0.95 44.67 29.54 68.60 2.03 46.69 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 22 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 23 C -0.10 -4.39 5.32 30.65 0.16 -4.23 16 24 C 0.07 2.35 5.11 86.33 0.44 2.79 16 25 C -0.10 -2.38 3.81 31.89 0.12 -2.26 16 26 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 27 H 0.13 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.06 0.83 8.13 -2.39 -0.02 0.81 16 29 H 0.06 1.14 7.83 -2.38 -0.02 1.12 16 30 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.06 1.64 8.04 -2.39 -0.02 1.62 16 33 H 0.08 2.63 7.46 -2.39 -0.02 2.61 16 34 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.06 3.38 6.17 -2.39 -0.01 3.36 16 37 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 38 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 39 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.08 2.67 6.27 -2.39 -0.01 2.66 16 43 H 0.07 2.04 7.15 -2.38 -0.02 2.02 16 44 H 0.07 1.72 7.91 -2.39 -0.02 1.71 16 Total: -1.00 -67.11 341.91 3.30 -63.80 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.95 Total: 10.16 kcal Atomic # 6 Polarization: -26.58 SS G_CDS: 4.16 Total: -22.43 kcal Atomic # 7 Polarization: -72.12 SS G_CDS: -3.63 Total: -75.75 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.20 Total: -22.48 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -67.11 3.30 -63.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170554530.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.657 kcal (2) G-P(sol) polarization free energy of solvation -67.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds