Wall clock time and date at job start Tue Mar 31 2020 05:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42899 * 109.47219 * 2 1 4 4 C 1.34970 * 117.00268 * 179.97438 * 3 2 1 5 5 O 1.21711 * 119.99764 * 0.02562 * 4 3 2 6 6 C 1.41192 * 120.00005 * 179.97438 * 4 3 2 7 7 C 1.34733 * 124.79218 * 185.56315 * 6 4 3 8 8 N 1.36578 * 124.80052 * 359.93080 * 7 6 4 9 9 C 1.46495 * 120.00357 * 185.67711 * 8 7 6 10 10 H 1.08994 * 109.47548 * 321.27745 * 9 8 7 11 11 C 1.53004 * 109.46785 * 81.27640 * 9 8 7 12 12 C 1.52997 * 109.47444 * 201.27389 * 9 8 7 13 13 C 1.52996 * 109.46979 * 65.00163 * 12 9 8 14 14 C 1.50710 * 109.46947 * 180.02562 * 13 12 9 15 15 H 1.07991 * 119.99694 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99607 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00385 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99826 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46822 * 89.99841 * 18 16 14 20 20 H 1.48499 * 109.47197 * 209.99827 * 18 16 14 21 21 H 1.48502 * 109.47189 * 330.00215 * 18 16 14 22 22 C 1.51126 * 110.40532 * 180.19482 * 7 6 4 23 23 C 1.54672 * 104.87515 * 342.89722 * 22 7 6 24 24 C 1.51127 * 124.79423 * 5.52855 * 6 4 3 25 25 H 1.08994 * 109.47389 * 300.00058 * 1 2 3 26 26 H 1.09009 * 109.47134 * 60.00110 * 1 2 3 27 27 H 1.09002 * 109.47088 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46891 * 240.00582 * 2 1 3 29 29 H 1.08992 * 109.47112 * 120.00126 * 2 1 3 30 30 H 0.97004 * 119.99632 * 5.68330 * 8 7 6 31 31 H 1.09003 * 109.47455 * 180.02562 * 11 9 8 32 32 H 1.09007 * 109.47079 * 299.99583 * 11 9 8 33 33 H 1.08995 * 109.47714 * 59.99943 * 11 9 8 34 34 H 1.09004 * 109.47188 * 305.00099 * 12 9 8 35 35 H 1.08998 * 109.46998 * 185.00397 * 12 9 8 36 36 H 1.09004 * 109.46949 * 60.00433 * 13 12 9 37 37 H 1.08998 * 109.47446 * 299.99959 * 13 12 9 38 38 H 0.97005 * 119.99893 * 179.97438 * 17 16 14 39 39 H 1.08998 * 110.34625 * 101.88483 * 22 7 6 40 40 H 1.09006 * 110.34737 * 224.14066 * 22 7 6 41 41 H 1.09000 * 111.13125 * 267.51500 * 23 22 7 42 42 H 1.09011 * 110.82837 * 143.82173 * 23 22 7 43 43 H 1.08998 * 110.33984 * 315.65942 * 24 6 4 44 44 H 1.08995 * 110.34411 * 77.92811 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3444 1.5241 0.0005 5 8 4.0858 0.5589 0.0005 6 6 3.8840 2.8289 0.0000 7 6 5.1956 3.1183 -0.1068 8 7 6.1910 2.1912 -0.2285 9 6 7.5931 2.6154 -0.2125 10 1 7.6956 3.5523 -0.7599 11 6 8.0482 2.8177 1.2342 12 6 8.4586 1.5411 -0.8740 13 6 8.0872 1.4267 -2.3537 14 6 8.9394 0.3680 -3.0051 15 1 9.6721 -0.1697 -2.4218 16 6 8.7834 0.0860 -4.3457 17 7 7.8907 0.7405 -5.0558 18 14 9.8401 -1.2258 -5.1533 19 1 9.1592 -2.5416 -5.0517 20 1 10.0461 -0.8841 -6.5837 21 1 11.1549 -1.2945 -4.4663 22 6 5.4101 4.6137 -0.0664 23 6 4.0185 5.2225 -0.3582 24 6 3.0721 4.0980 0.1184 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 5.9696 1.2518 -0.3256 31 1 9.0914 3.1337 1.2462 32 1 7.4317 3.5832 1.7054 33 1 7.9459 1.8808 1.7817 34 1 8.2886 0.5835 -0.3816 35 1 9.5098 1.8147 -0.7832 36 1 8.2573 2.3842 -2.8461 37 1 7.0361 1.1531 -2.4445 38 1 7.7812 0.5423 -5.9991 39 1 5.7612 4.9197 0.9191 40 1 6.1230 4.9153 -0.8339 41 1 3.8892 5.4149 -1.4233 42 1 3.8644 6.1328 0.2214 43 1 2.1922 4.0460 -0.5228 44 1 2.7777 4.2642 1.1547 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172485355.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:11 Heat of formation + Delta-G solvation = -106.233597 kcal Electronic energy + Delta-G solvation = -22583.198226 eV Core-core repulsion = 19306.350293 eV Total energy + Delta-G solvation = -3276.847933 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.36309 -38.79380 -36.44250 -36.04356 -33.28651 -31.68875 -31.56762 -29.63032 -28.87752 -26.83992 -25.12252 -23.75180 -22.00942 -21.94327 -20.99709 -19.59966 -19.07544 -17.37498 -16.53746 -16.35479 -16.27486 -15.43208 -15.34042 -14.54334 -14.04165 -13.76095 -13.58597 -13.23769 -13.09631 -12.82142 -12.67457 -12.46849 -12.36242 -12.18586 -12.01353 -11.74572 -11.51356 -11.38412 -11.24942 -11.10944 -11.05075 -10.93766 -10.58528 -10.48822 -10.19117 -10.09865 -9.93275 -9.81965 -9.34412 -9.08682 -8.36715 -7.26322 -6.01237 -4.04357 1.74467 3.30424 3.31372 3.37508 3.40192 3.59121 3.67880 4.44382 4.53299 4.80096 5.03350 5.04691 5.10322 5.14484 5.34679 5.35986 5.36816 5.45510 5.47236 5.57880 5.63140 5.75174 5.83067 5.84715 5.89301 5.97584 5.98999 5.99697 6.15022 6.21481 6.29568 6.33986 6.47840 6.53860 6.64930 6.96628 6.97341 7.52356 7.63137 7.75951 7.96789 8.01967 8.38379 8.44696 9.02328 9.60058 11.09846 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013389 B = 0.004687 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.833443 B = 5971.952016 C = 7161.645628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.062 3.938 3 O -0.358 6.358 4 C 0.530 3.470 5 O -0.553 6.553 6 C -0.372 4.372 7 C 0.286 3.714 8 N -0.668 5.668 9 C 0.127 3.873 10 H 0.080 0.920 11 C -0.164 4.164 12 C -0.121 4.121 13 C 0.022 3.978 14 C -0.524 4.524 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.891 3.109 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.101 4.101 23 C -0.118 4.118 24 C -0.042 4.042 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.423 0.577 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.015 0.985 37 H 0.019 0.981 38 H 0.260 0.740 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.954 7.954 12.613 17.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.013 4.013 3 O -0.276 6.276 4 C 0.384 3.616 5 O -0.447 6.447 6 C -0.384 4.384 7 C 0.165 3.835 8 N -0.292 5.292 9 C 0.023 3.977 10 H 0.098 0.902 11 C -0.223 4.223 12 C -0.158 4.158 13 C -0.015 4.015 14 C -0.562 4.562 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.719 3.281 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.139 4.139 23 C -0.156 4.156 24 C -0.080 4.080 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.266 0.734 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.033 0.967 37 H 0.037 0.963 38 H 0.070 0.930 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.575 7.701 12.426 17.475 hybrid contribution 0.481 -1.405 -0.658 1.624 sum -9.094 6.296 11.768 16.150 Atomic orbital electron populations 1.21778 0.93292 1.02439 1.03109 1.22450 0.94762 0.81981 1.02070 1.86171 1.25148 1.30742 1.85519 1.18951 0.79806 0.89515 0.73312 1.90740 1.59610 1.43171 1.51159 1.18642 0.93140 0.92519 1.34101 1.20344 0.87870 0.91771 0.83529 1.45044 1.04299 1.10526 1.69302 1.21468 0.80502 1.00060 0.95721 0.90247 1.22284 1.01395 1.01914 0.96671 1.21970 0.98013 0.96109 0.99750 1.19104 0.97158 0.97047 0.88189 1.21219 1.20254 1.20309 0.94430 0.92694 1.25015 0.95437 0.96364 0.97504 1.69968 1.34139 1.41349 1.07758 0.86604 0.80782 0.82077 0.78605 1.20650 1.21202 1.19870 1.21506 0.99816 0.89213 1.03319 1.22361 0.93324 0.97946 1.01958 1.20497 0.97053 0.90051 1.00365 0.91850 0.91687 0.90788 0.91874 0.92180 0.73373 0.91405 0.93000 0.92277 0.92515 0.91408 0.96702 0.96278 0.92989 0.88936 0.89419 0.90655 0.90661 0.91684 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.28 37.16 0.38 -1.10 16 2 C 0.06 0.86 6.10 37.16 0.23 1.09 16 3 O -0.36 -5.84 9.84 -41.23 -0.41 -6.24 16 4 C 0.53 9.74 7.70 31.85 0.25 9.99 16 5 O -0.55 -11.59 14.21 -19.43 -0.28 -11.87 16 6 C -0.37 -6.03 5.94 -104.53 -0.62 -6.65 16 7 C 0.29 4.46 6.79 -81.51 -0.55 3.91 16 8 N -0.67 -11.62 4.56 -50.31 -0.23 -11.85 16 9 C 0.13 2.02 2.54 -67.93 -0.17 1.85 16 10 H 0.08 1.21 6.91 -51.93 -0.36 0.86 16 11 C -0.16 -2.09 9.44 37.16 0.35 -1.74 16 12 C -0.12 -2.37 4.67 -26.74 -0.12 -2.49 16 13 C 0.02 0.56 4.86 -27.88 -0.14 0.43 16 14 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 15 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 18 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.10 -1.16 5.86 -26.80 -0.16 -1.32 16 23 C -0.12 -1.22 7.14 -25.05 -0.18 -1.40 16 24 C -0.04 -0.52 6.46 -26.88 -0.17 -0.69 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.93 8.13 -51.93 -0.42 0.50 16 29 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 30 H 0.42 8.50 6.04 -40.82 -0.25 8.25 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.58 7.62 -51.93 -0.40 0.19 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.02 0.53 7.70 -51.93 -0.40 0.13 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 39 H 0.09 0.88 7.69 -51.93 -0.40 0.48 16 40 H 0.09 1.00 7.28 -51.93 -0.38 0.62 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 358.37 15.07 5.40 5.40 Total: -1.00 -32.64 358.37 -8.76 -41.40 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -7.64 Total: 4.50 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -1.32 Total: -11.76 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.51 Total: -38.33 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.68 Total: -18.11 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.64 -8.76 -41.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172485355.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.833 kcal (2) G-P(sol) polarization free energy of solvation -32.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds