Wall clock time and date at job start Tue Mar 31 2020 05:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42899 * 109.47219 * 2 1 4 4 C 1.34970 * 117.00268 * 179.97438 * 3 2 1 5 5 O 1.21711 * 119.99764 * 0.02562 * 4 3 2 6 6 C 1.41192 * 120.00005 * 179.97438 * 4 3 2 7 7 C 1.34733 * 124.79218 * 185.56315 * 6 4 3 8 8 N 1.36578 * 124.80052 * 359.93080 * 7 6 4 9 9 C 1.46495 * 120.00357 * 185.67711 * 8 7 6 10 10 H 1.08994 * 109.47548 * 321.27745 * 9 8 7 11 11 C 1.53004 * 109.46785 * 81.27640 * 9 8 7 12 12 C 1.52997 * 109.47444 * 201.27389 * 9 8 7 13 13 C 1.52996 * 109.46979 * 65.00163 * 12 9 8 14 14 C 1.50710 * 109.46947 * 180.02562 * 13 12 9 15 15 H 1.07991 * 119.99694 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99607 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00385 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99826 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46822 * 89.99841 * 18 16 14 20 20 H 1.48499 * 109.47197 * 209.99827 * 18 16 14 21 21 H 1.48502 * 109.47189 * 330.00215 * 18 16 14 22 22 C 1.51126 * 110.40532 * 180.19482 * 7 6 4 23 23 C 1.54672 * 104.87515 * 342.89722 * 22 7 6 24 24 C 1.51127 * 124.79423 * 5.52855 * 6 4 3 25 25 H 1.08994 * 109.47389 * 300.00058 * 1 2 3 26 26 H 1.09009 * 109.47134 * 60.00110 * 1 2 3 27 27 H 1.09002 * 109.47088 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46891 * 240.00582 * 2 1 3 29 29 H 1.08992 * 109.47112 * 120.00126 * 2 1 3 30 30 H 0.97004 * 119.99632 * 5.68330 * 8 7 6 31 31 H 1.09003 * 109.47455 * 180.02562 * 11 9 8 32 32 H 1.09007 * 109.47079 * 299.99583 * 11 9 8 33 33 H 1.08995 * 109.47714 * 59.99943 * 11 9 8 34 34 H 1.09004 * 109.47188 * 305.00099 * 12 9 8 35 35 H 1.08998 * 109.46998 * 185.00397 * 12 9 8 36 36 H 1.09004 * 109.46949 * 60.00433 * 13 12 9 37 37 H 1.08998 * 109.47446 * 299.99959 * 13 12 9 38 38 H 0.97005 * 119.99893 * 179.97438 * 17 16 14 39 39 H 1.08998 * 110.34625 * 101.88483 * 22 7 6 40 40 H 1.09006 * 110.34737 * 224.14066 * 22 7 6 41 41 H 1.09000 * 111.13125 * 267.51500 * 23 22 7 42 42 H 1.09011 * 110.82837 * 143.82173 * 23 22 7 43 43 H 1.08998 * 110.33984 * 315.65942 * 24 6 4 44 44 H 1.08995 * 110.34411 * 77.92811 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3444 1.5241 0.0005 5 8 4.0858 0.5589 0.0005 6 6 3.8840 2.8289 0.0000 7 6 5.1956 3.1183 -0.1068 8 7 6.1910 2.1912 -0.2285 9 6 7.5931 2.6154 -0.2125 10 1 7.6956 3.5523 -0.7599 11 6 8.0482 2.8177 1.2342 12 6 8.4586 1.5411 -0.8740 13 6 8.0872 1.4267 -2.3537 14 6 8.9394 0.3680 -3.0051 15 1 9.6721 -0.1697 -2.4218 16 6 8.7834 0.0860 -4.3457 17 7 7.8907 0.7405 -5.0558 18 14 9.8401 -1.2258 -5.1533 19 1 9.1592 -2.5416 -5.0517 20 1 10.0461 -0.8841 -6.5837 21 1 11.1549 -1.2945 -4.4663 22 6 5.4101 4.6137 -0.0664 23 6 4.0185 5.2225 -0.3582 24 6 3.0721 4.0980 0.1184 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 5.9696 1.2518 -0.3256 31 1 9.0914 3.1337 1.2462 32 1 7.4317 3.5832 1.7054 33 1 7.9459 1.8808 1.7817 34 1 8.2886 0.5835 -0.3816 35 1 9.5098 1.8147 -0.7832 36 1 8.2573 2.3842 -2.8461 37 1 7.0361 1.1531 -2.4445 38 1 7.7812 0.5423 -5.9991 39 1 5.7612 4.9197 0.9191 40 1 6.1230 4.9153 -0.8339 41 1 3.8892 5.4149 -1.4233 42 1 3.8644 6.1328 0.2214 43 1 2.1922 4.0460 -0.5228 44 1 2.7777 4.2642 1.1547 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172485355.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:10 Heat of formation + Delta-G solvation = -124.712237 kcal Electronic energy + Delta-G solvation = -22583.999520 eV Core-core repulsion = 19306.350293 eV Total energy + Delta-G solvation = -3277.649227 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.65205 -40.01600 -37.75048 -37.38346 -35.28408 -33.21399 -32.62949 -31.16352 -30.03331 -27.93350 -26.97016 -24.87781 -23.54159 -23.06803 -22.47427 -20.89429 -20.29334 -18.66784 -18.47027 -17.85549 -17.55467 -16.72791 -16.58900 -16.34063 -15.30281 -14.93309 -14.89255 -14.77605 -14.43546 -14.16973 -13.78601 -13.75738 -13.50334 -13.43114 -13.17448 -12.99914 -12.92040 -12.85494 -12.61143 -12.49866 -12.34120 -12.17472 -12.05877 -11.87807 -11.70155 -11.48066 -11.41600 -11.26871 -11.19203 -10.89330 -10.60107 -8.52381 -8.24185 -6.35775 0.46621 1.35440 1.37134 1.47932 2.09610 2.28384 2.36669 2.39840 3.09292 3.49643 3.84294 3.87272 3.99511 4.12148 4.14273 4.21767 4.31120 4.33154 4.43370 4.50952 4.65735 4.72542 4.83803 4.85903 4.86925 4.91338 4.95046 4.98361 5.05794 5.12611 5.14932 5.22383 5.29875 5.32535 5.43377 5.45855 5.47852 5.63518 5.69663 5.80193 6.18879 6.31940 6.56668 6.82012 7.07516 7.33925 8.87279 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013389 B = 0.004687 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.833443 B = 5971.952016 C = 7161.645628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.515 3.485 5 O -0.593 6.593 6 C -0.397 4.397 7 C 0.278 3.722 8 N -0.682 5.682 9 C 0.132 3.868 10 H 0.089 0.911 11 C -0.154 4.154 12 C -0.110 4.110 13 C 0.030 3.970 14 C -0.546 4.546 15 H 0.061 0.939 16 C 0.000 4.000 17 N -0.933 5.933 18 Si 0.963 3.037 19 H -0.278 1.278 20 H -0.280 1.280 21 H -0.259 1.259 22 C -0.097 4.097 23 C -0.109 4.109 24 C -0.038 4.038 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.097 0.903 28 H 0.045 0.955 29 H 0.057 0.943 30 H 0.406 0.594 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.050 0.950 34 H 0.047 0.953 35 H 0.083 0.917 36 H -0.006 1.006 37 H -0.017 1.017 38 H 0.263 0.737 39 H 0.123 0.877 40 H 0.091 0.909 41 H 0.071 0.929 42 H 0.111 0.889 43 H 0.059 0.941 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.476 9.353 13.830 19.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.371 3.629 5 O -0.491 6.491 6 C -0.408 4.408 7 C 0.157 3.843 8 N -0.304 5.304 9 C 0.028 3.972 10 H 0.107 0.893 11 C -0.212 4.212 12 C -0.148 4.148 13 C -0.007 4.007 14 C -0.584 4.584 15 H 0.079 0.921 16 C -0.198 4.198 17 N -0.573 5.573 18 Si 0.788 3.212 19 H -0.203 1.203 20 H -0.205 1.205 21 H -0.183 1.183 22 C -0.134 4.134 23 C -0.146 4.146 24 C -0.076 4.076 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.115 0.885 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.246 0.754 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.102 0.898 36 H 0.013 0.987 37 H 0.001 0.999 38 H 0.071 0.929 39 H 0.141 0.859 40 H 0.109 0.891 41 H 0.090 0.910 42 H 0.129 0.871 43 H 0.078 0.922 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.108 9.135 13.662 18.790 hybrid contribution 0.295 -1.891 -1.055 2.185 sum -8.813 7.244 12.608 17.003 Atomic orbital electron populations 1.21776 0.89880 1.04186 1.03717 1.22719 0.97411 0.80919 1.01114 1.86173 1.24204 1.32029 1.85166 1.19551 0.80232 0.90168 0.72931 1.90709 1.60454 1.44556 1.53331 1.19144 0.94278 0.92994 1.34405 1.21058 0.87362 0.93678 0.82155 1.45200 1.05367 1.10160 1.69684 1.21468 0.79255 0.98613 0.97888 0.89279 1.22198 1.02942 1.02317 0.93762 1.21789 0.99728 0.97420 0.95820 1.18946 0.94630 0.95137 0.92036 1.21733 1.20629 1.20985 0.95079 0.92110 1.25982 0.96765 0.98739 0.98328 1.70108 1.35891 1.43156 1.08124 0.85477 0.79345 0.78757 0.77663 1.20339 1.20533 1.18290 1.21681 1.00801 0.85851 1.05082 1.22389 0.91591 0.98303 1.02346 1.20540 0.96814 0.88972 1.01283 0.90748 0.91485 0.88464 0.93647 0.92452 0.75443 0.89370 0.90773 0.93110 0.93379 0.89845 0.98739 0.99901 0.92874 0.85914 0.89069 0.91048 0.87093 0.92218 0.90803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 10.28 71.98 0.74 -1.92 16 2 C 0.05 1.52 6.10 71.98 0.44 1.96 16 3 O -0.36 -12.12 9.84 -58.87 -0.58 -12.70 16 4 C 0.51 19.84 7.70 68.55 0.53 20.36 16 5 O -0.59 -26.61 14.21 19.14 0.27 -26.34 16 6 C -0.40 -12.98 5.94 -19.81 -0.12 -13.09 16 7 C 0.28 8.60 6.79 41.15 0.28 8.88 16 8 N -0.68 -24.23 4.56 -313.08 -1.43 -25.66 16 9 C 0.13 4.09 2.54 44.99 0.11 4.21 16 10 H 0.09 2.60 6.91 -2.39 -0.02 2.58 16 11 C -0.15 -3.53 9.44 71.98 0.68 -2.85 16 12 C -0.11 -4.34 4.67 30.59 0.14 -4.20 16 13 C 0.03 1.57 4.86 29.85 0.15 1.72 16 14 C -0.55 -31.67 9.11 25.60 0.23 -31.44 16 15 H 0.06 3.36 7.74 -2.92 -0.02 3.34 16 16 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 17 N -0.93 -58.37 13.29 21.45 0.28 -58.08 16 18 Si 0.96 45.35 29.54 68.60 2.03 47.38 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 22 C -0.10 -1.98 5.86 30.55 0.18 -1.80 16 23 C -0.11 -1.94 7.14 31.68 0.23 -1.71 16 24 C -0.04 -0.90 6.46 30.50 0.20 -0.70 16 25 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 27 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.05 1.43 8.13 -2.39 -0.02 1.41 16 29 H 0.06 1.64 8.13 -2.39 -0.02 1.63 16 30 H 0.41 17.29 6.04 -92.71 -0.56 16.73 16 31 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 1.39 7.62 -2.38 -0.02 1.38 16 33 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 36 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 37 H -0.02 -1.04 7.70 -2.39 -0.02 -1.06 16 38 H 0.26 15.46 8.31 -92.70 -0.77 14.69 16 39 H 0.12 1.81 7.69 -2.39 -0.02 1.79 16 40 H 0.09 1.84 7.28 -2.38 -0.02 1.83 16 41 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 43 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -74.64 358.37 5.23 -69.41 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: 0.41 Total: 26.13 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: 4.25 Total: -20.14 kcal Atomic # 7 Polarization: -82.60 SS G_CDS: -1.14 Total: -83.74 kcal Atomic # 8 Polarization: -38.72 SS G_CDS: -0.31 Total: -39.03 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -74.64 5.23 -69.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172485355.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.306 kcal (2) G-P(sol) polarization free energy of solvation -74.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds