Wall clock time and date at job start Tue Mar 31 2020 05:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50704 * 120.00066 * 2 1 4 4 H 1.09000 * 115.56151 * 334.31092 * 3 2 1 5 5 C 1.53002 * 117.49802 * 188.62097 * 3 2 1 6 6 C 1.53003 * 60.00059 * 252.50999 * 5 3 2 7 7 N 1.46899 * 117.51978 * 252.51981 * 6 5 3 8 8 C 1.46895 * 110.99961 * 149.89631 * 7 6 5 9 9 H 1.09002 * 109.47094 * 33.57023 * 8 7 6 10 10 C 1.52999 * 109.47492 * 273.56675 * 8 7 6 11 11 C 1.53001 * 109.47355 * 153.56634 * 8 7 6 12 12 C 1.52999 * 109.47269 * 295.00568 * 11 8 7 13 13 C 1.50695 * 109.47421 * 179.97438 * 12 11 8 14 14 H 1.08001 * 120.00112 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00542 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99329 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00510 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46948 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46701 * 120.00236 * 17 15 13 20 20 H 1.48495 * 109.47476 * 240.00376 * 17 15 13 21 21 C 1.50702 * 117.49719 * 107.48855 * 6 5 3 22 22 O 1.20825 * 120.00197 * 316.72056 * 21 6 5 23 23 O 1.34229 * 119.99745 * 136.72436 * 21 6 5 24 24 C 1.45206 * 116.99668 * 180.02562 * 23 21 6 25 25 C 1.53002 * 109.46630 * 179.97438 * 24 23 21 26 26 H 1.07998 * 120.00001 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99688 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.00378 * 179.97438 * 2 1 3 29 29 H 1.08999 * 117.49963 * 145.02400 * 5 3 2 30 30 H 1.08994 * 117.50222 * 359.97438 * 5 3 2 31 31 H 1.00902 * 111.00127 * 25.94802 * 7 6 5 32 32 H 1.09000 * 109.46912 * 58.72252 * 10 8 7 33 33 H 1.09004 * 109.47557 * 178.71810 * 10 8 7 34 34 H 1.08999 * 109.47504 * 298.72308 * 10 8 7 35 35 H 1.09000 * 109.46574 * 54.99887 * 11 8 7 36 36 H 1.09001 * 109.47501 * 174.99773 * 11 8 7 37 37 H 1.09000 * 109.46766 * 299.99201 * 12 11 8 38 38 H 1.09001 * 109.47509 * 59.99209 * 12 11 8 39 39 H 0.96998 * 119.99594 * 179.97438 * 16 15 13 40 40 H 1.08997 * 109.46973 * 60.00011 * 24 23 21 41 41 H 1.08997 * 109.46977 * 299.99608 * 24 23 21 42 42 H 1.08997 * 109.47152 * 299.99539 * 25 24 23 43 43 H 1.08997 * 109.47402 * 60.00312 * 25 24 23 44 44 H 1.09003 * 109.46866 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.5313 2.1555 -0.4263 5 6 3.5788 1.2460 -0.2034 6 6 3.0044 1.5776 1.1754 7 7 3.1209 2.9652 1.6433 8 6 2.0048 3.3168 2.5313 9 1 1.7074 2.4395 3.1058 10 6 0.8204 3.8035 1.6938 11 6 2.4440 4.4276 3.4874 12 6 3.5449 3.9007 4.4100 13 6 3.9779 4.9950 5.3513 14 1 3.5140 5.9688 5.2972 15 6 4.9656 4.7528 6.2823 16 7 5.5302 3.5667 6.3485 17 14 5.5029 6.1094 7.4486 18 1 4.7192 7.3399 7.1711 19 1 5.2679 5.6789 8.8502 20 1 6.9483 6.3877 7.2519 21 6 3.1067 0.5204 2.2444 22 8 2.8613 -0.6326 1.9793 23 8 3.4702 0.8597 3.4912 24 6 3.5484 -0.2107 4.4693 25 6 3.9754 0.3643 5.8213 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 4.0434 2.0575 -0.7635 30 1 4.0307 0.2632 -0.3368 31 1 3.1796 3.6054 0.8656 32 1 0.5220 3.0203 0.9970 33 1 -0.0155 4.0428 2.3511 34 1 1.1110 4.6941 1.1366 35 1 2.8248 5.2719 2.9127 36 1 1.5918 4.7501 4.0857 37 1 3.1640 3.0564 4.9847 38 1 4.3970 3.5782 3.8117 39 1 6.2253 3.3964 7.0032 40 1 4.2798 -0.9495 4.1417 41 1 2.5719 -0.6849 4.5678 42 1 4.9520 0.8382 5.7225 43 1 3.2443 1.1033 6.1491 44 1 4.0345 -0.4393 6.5555 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172485377.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:08 Heat of formation + Delta-G solvation = -49.856123 kcal Electronic energy + Delta-G solvation = -23596.006324 eV Core-core repulsion = 20321.603101 eV Total energy + Delta-G solvation = -3274.403222 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.63070 -38.35377 -36.48495 -35.29311 -33.10615 -32.37398 -31.04008 -29.87636 -28.49159 -24.99849 -24.87034 -22.99130 -22.07377 -21.51400 -20.06578 -19.73579 -19.58701 -17.39909 -16.13473 -16.02911 -15.91576 -15.74358 -14.58017 -14.32900 -14.22846 -13.96774 -13.63443 -13.18788 -12.93152 -12.63505 -12.38811 -12.28468 -12.12785 -12.01915 -11.70529 -11.41130 -11.24625 -11.13670 -11.02842 -10.92458 -10.83595 -10.60070 -10.38555 -10.17244 -10.01828 -9.97600 -9.54870 -9.41963 -9.03288 -8.77702 -8.15622 -7.88862 -5.82034 -3.81426 2.00806 2.53368 3.00711 3.38261 3.46215 3.49972 3.78383 4.23822 4.53960 4.58569 4.70167 4.80352 5.08521 5.25697 5.37542 5.45542 5.49172 5.51760 5.53384 5.55636 5.59694 5.67915 5.75369 5.77892 6.03970 6.11844 6.23900 6.26482 6.39157 6.58651 6.63173 6.68186 6.76366 6.79002 6.89771 7.14953 7.23253 7.42670 7.62890 7.95233 8.18762 8.22240 8.37267 8.66186 9.27954 9.79747 11.27840 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020241 B = 0.005365 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.985264 B = 5217.580597 C = 6025.556323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 C -0.136 4.136 4 H 0.119 0.881 5 C -0.134 4.134 6 C 0.059 3.941 7 N -0.618 5.618 8 C 0.087 3.913 9 H 0.074 0.926 10 C -0.186 4.186 11 C -0.098 4.098 12 C 0.035 3.965 13 C -0.517 4.517 14 H 0.047 0.953 15 C 0.060 3.940 16 N -0.887 5.887 17 Si 0.880 3.120 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.287 1.287 21 C 0.508 3.492 22 O -0.520 6.520 23 O -0.308 6.308 24 C 0.068 3.932 25 C -0.148 4.148 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.122 0.878 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.345 0.655 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.045 0.955 36 H 0.046 0.954 37 H 0.015 0.985 38 H 0.034 0.966 39 H 0.254 0.746 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.120 -6.651 -11.655 15.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.123 4.123 3 C -0.157 4.157 4 H 0.137 0.863 5 C -0.171 4.171 6 C -0.035 4.035 7 N -0.248 5.248 8 C -0.021 4.021 9 H 0.092 0.908 10 C -0.245 4.245 11 C -0.136 4.136 12 C -0.002 4.002 13 C -0.556 4.556 14 H 0.066 0.934 15 C -0.141 4.141 16 N -0.527 5.527 17 Si 0.709 3.291 18 H -0.201 1.201 19 H -0.214 1.214 20 H -0.213 1.213 21 C 0.351 3.649 22 O -0.410 6.410 23 O -0.223 6.223 24 C -0.006 4.006 25 C -0.205 4.205 26 H 0.116 0.884 27 H 0.110 0.890 28 H 0.139 0.861 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.165 0.835 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.034 0.966 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.107 0.893 43 H 0.091 0.909 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.599 -7.214 -11.019 14.732 hybrid contribution -0.383 0.744 0.161 0.852 sum -6.982 -6.470 -10.859 14.440 Atomic orbital electron populations 1.23664 0.95795 1.01503 1.02980 1.22389 0.95398 0.96579 0.97936 1.22253 0.92479 0.98758 1.02248 0.86294 1.23343 0.95160 1.04302 0.94329 1.21140 1.05428 0.90459 0.86521 1.60277 1.45134 0.98225 1.21149 1.21781 0.87006 0.99933 0.93422 0.90827 1.22660 1.00232 1.00848 1.00726 1.21651 1.00142 0.95351 0.96494 1.18969 0.93162 0.95202 0.92835 1.21417 1.19352 0.98053 1.16746 0.93441 1.24920 0.96634 0.95110 0.97402 1.69978 1.26389 1.20732 1.35566 0.86733 0.78345 0.82839 0.81163 1.20101 1.21371 1.21320 1.21977 0.72553 0.87297 0.83041 1.90598 1.47522 1.20687 1.82202 1.86828 1.77472 1.39705 1.18246 1.23060 1.00644 0.88428 0.88503 1.21760 1.05499 1.01054 0.92140 0.88429 0.89014 0.86053 0.86916 0.87245 0.83531 0.93279 0.92099 0.92626 0.93589 0.93552 0.96648 0.94791 0.93630 0.92194 0.92456 0.89318 0.90949 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.31 14.35 29.02 0.42 -1.90 16 2 C -0.10 -1.32 7.71 -36.02 -0.28 -1.60 16 3 C -0.14 -1.64 4.81 -91.77 -0.44 -2.08 16 4 H 0.12 1.27 6.93 -51.93 -0.36 0.91 16 5 C -0.13 -1.57 9.61 -26.73 -0.26 -1.82 16 6 C 0.06 0.88 2.32 -132.75 -0.31 0.57 16 7 N -0.62 -9.79 5.70 -94.21 -0.54 -10.32 16 8 C 0.09 1.46 2.25 -67.72 -0.15 1.31 16 9 H 0.07 1.38 6.40 -51.93 -0.33 1.04 16 10 C -0.19 -2.47 9.08 37.16 0.34 -2.13 16 11 C -0.10 -2.00 4.83 -26.73 -0.13 -2.13 16 12 C 0.04 0.90 4.65 -27.89 -0.13 0.77 16 13 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 14 H 0.05 1.32 7.74 -52.49 -0.41 0.92 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 17 Si 0.88 21.66 29.54 -169.99 -5.02 16.64 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 C 0.51 8.95 6.78 36.01 0.24 9.19 16 22 O -0.52 -9.31 13.75 -18.75 -0.26 -9.57 16 23 O -0.31 -6.00 8.46 -39.26 -0.33 -6.33 16 24 C 0.07 1.16 6.19 37.16 0.23 1.39 16 25 C -0.15 -2.65 10.29 37.16 0.38 -2.26 16 26 H 0.10 1.01 8.06 -52.49 -0.42 0.58 16 27 H 0.09 0.98 8.05 -52.49 -0.42 0.55 16 28 H 0.12 1.64 7.05 -52.49 -0.37 1.27 16 29 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.34 4.64 8.33 -39.29 -0.33 4.31 16 32 H 0.05 0.59 5.81 -51.93 -0.30 0.29 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.02 0.41 7.48 -51.93 -0.39 0.02 16 38 H 0.03 0.94 7.75 -51.93 -0.40 0.54 16 39 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 41 H 0.06 0.91 8.13 -51.93 -0.42 0.48 16 42 H 0.09 1.86 8.14 -51.93 -0.42 1.43 16 43 H 0.07 1.45 7.67 -51.93 -0.40 1.05 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 360.44 15.07 5.43 5.43 Total: -1.00 -30.29 360.44 -7.97 -38.26 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -7.49 Total: 4.66 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -0.50 Total: -13.96 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.20 Total: -35.13 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.59 Total: -15.90 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.29 -7.97 -38.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172485377.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.593 kcal (2) G-P(sol) polarization free energy of solvation -30.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds