Wall clock time and date at job start Tue Mar 31 2020 05:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45203 * 109.46752 * 2 1 4 4 C 1.34234 * 117.00179 * 179.97438 * 3 2 1 5 5 O 1.20834 * 119.99630 * 359.97438 * 4 3 2 6 6 C 1.50691 * 120.00118 * 179.97438 * 4 3 2 7 7 C 1.52883 * 119.46485 * 231.86854 * 6 4 3 8 8 C 1.53115 * 60.43286 * 249.33246 * 7 6 4 9 9 H 1.08997 * 119.78813 * 113.02370 * 8 7 6 10 10 C 1.54681 * 117.58956 * 267.91090 * 8 7 6 11 11 C 1.54955 * 102.79269 * 40.85743 * 10 8 7 12 12 N 1.47805 * 117.19059 * 27.71854 * 6 4 3 13 13 C 1.46895 * 110.99751 * 284.81637 * 12 6 4 14 14 H 1.09005 * 109.46705 * 227.41889 * 13 12 6 15 15 C 1.53003 * 109.47258 * 347.41688 * 13 12 6 16 16 C 1.53003 * 109.47371 * 107.42186 * 13 12 6 17 17 C 1.52991 * 109.47250 * 66.86021 * 16 13 12 18 18 C 1.50703 * 109.47250 * 183.86690 * 17 16 13 19 19 H 1.07997 * 119.99864 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00102 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99921 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 119.99853 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47235 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47212 * 119.99956 * 22 20 18 25 25 H 1.48505 * 109.47263 * 239.99980 * 22 20 18 26 26 H 1.09004 * 109.46476 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47749 * 300.00403 * 1 2 3 28 28 H 1.09004 * 109.46969 * 60.00985 * 1 2 3 29 29 H 1.08995 * 109.47749 * 239.99597 * 2 1 3 30 30 H 1.09004 * 109.46969 * 119.99015 * 2 1 3 31 31 H 1.09003 * 117.45087 * 141.71386 * 7 6 4 32 32 H 1.09003 * 117.42816 * 356.95850 * 7 6 4 33 33 H 1.09004 * 110.74953 * 282.53495 * 10 8 7 34 34 H 1.08997 * 110.74732 * 159.18180 * 10 8 7 35 35 H 1.09000 * 110.66457 * 279.14427 * 11 10 8 36 36 H 1.08997 * 110.66383 * 156.01667 * 11 10 8 37 37 H 1.08998 * 109.47134 * 180.02562 * 15 13 12 38 38 H 1.09003 * 109.46879 * 300.00209 * 15 13 12 39 39 H 1.08991 * 109.47081 * 60.00344 * 15 13 12 40 40 H 1.08998 * 109.46805 * 186.86129 * 16 13 12 41 41 H 1.09003 * 109.46584 * 306.85893 * 16 13 12 42 42 H 1.09000 * 109.47744 * 303.86943 * 17 16 13 43 43 H 1.09004 * 109.47261 * 63.87073 * 17 16 13 44 44 H 0.97000 * 119.99872 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9205 2.9376 0.0000 7 6 4.9679 3.3178 -1.0468 8 6 5.3800 3.1886 0.4222 9 1 6.0547 2.3887 0.7270 10 6 5.3350 4.4657 1.2938 11 6 4.0241 5.1505 0.8317 12 7 3.1028 4.0068 0.6105 13 6 1.9920 4.3886 -0.2716 14 1 1.9461 5.4749 -0.3488 15 6 2.2142 3.7876 -1.6610 16 6 0.6770 3.8625 0.3072 17 6 0.3689 4.5905 1.6171 18 6 -0.8754 4.0070 2.2355 19 1 -1.3942 3.1976 1.7437 20 6 -1.3514 4.5066 3.4292 21 7 -0.7192 5.4920 4.0284 22 14 -2.8932 3.7829 4.1961 23 1 -3.4113 2.6926 3.3312 24 1 -2.5694 3.2385 5.5392 25 1 -3.9252 4.8427 4.3272 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 4.9161 4.3219 -1.4678 32 1 5.2991 2.5376 -1.7321 33 1 6.1958 5.1026 1.0904 34 1 5.2844 4.2093 2.3520 35 1 4.1837 5.7007 -0.0956 36 1 3.6393 5.8095 1.6099 37 1 1.3902 4.0712 -2.3157 38 1 3.1510 4.1625 -2.0734 39 1 2.2601 2.7014 -1.5839 40 1 -0.1295 4.0384 -0.4047 41 1 0.7662 2.7930 0.4982 42 1 1.2063 4.4717 2.3046 43 1 0.2118 5.6502 1.4155 44 1 -1.0543 5.8437 4.8680 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172496588.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:46 Heat of formation + Delta-G solvation = -48.165149 kcal Electronic energy + Delta-G solvation = -24015.078726 eV Core-core repulsion = 20740.748830 eV Total energy + Delta-G solvation = -3274.329896 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.23271 -39.34285 -36.61811 -35.08658 -32.79153 -31.74143 -31.28897 -29.84593 -28.11423 -25.13235 -25.02442 -23.47794 -22.31471 -21.36017 -20.35131 -20.07501 -18.80562 -17.27177 -16.80427 -16.34676 -16.11450 -15.38289 -14.63881 -14.44009 -14.18835 -13.85284 -13.59733 -13.33656 -13.00374 -12.64876 -12.47955 -12.29535 -12.24706 -11.92175 -11.73112 -11.62339 -11.33942 -11.30695 -11.14910 -11.04276 -10.84132 -10.53173 -10.41340 -10.29792 -10.25902 -10.09509 -9.76396 -9.40573 -9.04455 -8.85426 -8.19179 -7.97721 -5.85729 -3.85353 2.21703 2.77903 3.37386 3.44791 3.48251 3.60160 4.04875 4.36907 4.52644 4.56581 4.72746 5.06399 5.12932 5.14337 5.18523 5.33713 5.43113 5.43462 5.48129 5.50360 5.57945 5.67552 5.74719 5.80319 5.91441 6.02337 6.03107 6.08065 6.09502 6.20266 6.30311 6.39633 6.53847 6.63781 6.77470 6.95214 7.33940 7.36656 7.54860 7.90323 7.99333 8.15932 8.25314 8.63344 9.23288 9.76728 11.25799 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016133 B = 0.006241 C = 0.005135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.144228 B = 4485.707375 C = 5451.334961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.060 3.940 3 O -0.321 6.321 4 C 0.524 3.476 5 O -0.520 6.520 6 C 0.014 3.986 7 C -0.151 4.151 8 C -0.129 4.129 9 H 0.125 0.875 10 C -0.097 4.097 11 C 0.029 3.971 12 N -0.449 5.449 13 C 0.073 3.927 14 H 0.065 0.935 15 C -0.175 4.175 16 C -0.103 4.103 17 C 0.028 3.972 18 C -0.508 4.508 19 H 0.051 0.949 20 C 0.055 3.945 21 N -0.897 5.897 22 Si 0.884 3.116 23 H -0.274 1.274 24 H -0.286 1.286 25 H -0.286 1.286 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.047 0.953 36 H 0.098 0.902 37 H 0.056 0.944 38 H 0.048 0.952 39 H 0.064 0.936 40 H 0.040 0.960 41 H 0.079 0.921 42 H 0.028 0.972 43 H 0.003 0.997 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.794 -4.912 -10.886 16.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.014 4.014 3 O -0.236 6.236 4 C 0.368 3.632 5 O -0.409 6.409 6 C -0.079 4.079 7 C -0.190 4.190 8 C -0.147 4.147 9 H 0.143 0.857 10 C -0.134 4.134 11 C -0.098 4.098 12 N -0.172 5.172 13 C -0.035 4.035 14 H 0.083 0.917 15 C -0.233 4.233 16 C -0.140 4.140 17 C -0.009 4.009 18 C -0.547 4.547 19 H 0.070 0.930 20 C -0.145 4.145 21 N -0.537 5.537 22 Si 0.713 3.287 23 H -0.199 1.199 24 H -0.212 1.212 25 H -0.213 1.213 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.065 0.935 36 H 0.116 0.884 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.059 0.941 41 H 0.097 0.903 42 H 0.046 0.954 43 H 0.021 0.979 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.670 -5.288 -10.221 15.693 hybrid contribution -0.640 -0.201 -0.206 0.702 sum 10.030 -5.489 -10.427 15.474 Atomic orbital electron populations 1.21828 0.92281 1.02447 1.04612 1.23038 0.95864 0.80609 1.01851 1.86781 1.22977 1.31179 1.82674 1.21747 0.81134 0.89231 0.71107 1.90629 1.61106 1.42018 1.47169 1.21759 0.90311 0.90774 1.05039 1.23583 0.99698 1.03530 0.92227 1.23662 0.94551 1.00934 0.95581 0.85681 1.22201 0.97196 0.94105 0.99931 1.23362 0.92239 0.93451 1.00787 1.64936 1.06176 1.05449 1.40688 1.22034 0.93013 0.98734 0.89685 0.91721 1.22598 1.00919 1.02037 0.97744 1.21812 0.91289 1.02190 0.98751 1.19019 0.96317 0.94231 0.91348 1.21346 1.10120 1.17546 1.05677 0.93032 1.24993 0.96974 0.95269 0.97295 1.69980 1.39795 1.26432 1.17524 0.86663 0.83754 0.79057 0.79252 1.19877 1.21217 1.21257 0.90793 0.90222 0.91533 0.91906 0.91410 0.87610 0.87458 0.90480 0.89416 0.93489 0.88372 0.92485 0.93299 0.91761 0.94094 0.90311 0.95412 0.97908 0.93409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 10.29 37.16 0.38 -1.62 16 2 C 0.06 0.85 6.19 37.16 0.23 1.08 16 3 O -0.32 -5.45 5.11 -39.27 -0.20 -5.65 16 4 C 0.52 8.88 6.73 36.00 0.24 9.12 16 5 O -0.52 -9.33 16.58 -18.76 -0.31 -9.64 16 6 C 0.01 0.21 1.29 -131.80 -0.17 0.04 16 7 C -0.15 -1.77 7.83 -26.73 -0.21 -1.98 16 8 C -0.13 -1.63 6.83 -89.16 -0.61 -2.24 16 9 H 0.13 1.54 8.14 -51.93 -0.42 1.11 16 10 C -0.10 -1.15 7.01 -24.82 -0.17 -1.33 16 11 C 0.03 0.41 5.82 -1.90 -0.01 0.40 16 12 N -0.45 -7.60 4.49 -208.60 -0.94 -8.53 16 13 C 0.07 1.26 2.30 -67.71 -0.16 1.11 16 14 H 0.06 1.13 7.57 -51.93 -0.39 0.73 16 15 C -0.18 -2.54 7.78 37.16 0.29 -2.25 16 16 C -0.10 -2.17 4.67 -26.73 -0.12 -2.30 16 17 C 0.03 0.73 4.91 -27.89 -0.14 0.59 16 18 C -0.51 -14.61 9.11 -34.44 -0.31 -14.92 16 19 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 20 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 21 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 22 Si 0.88 22.05 29.54 -169.99 -5.02 17.03 16 23 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 30 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 31 H 0.11 1.11 6.18 -51.93 -0.32 0.79 16 32 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.05 0.58 7.11 -51.93 -0.37 0.21 16 36 H 0.10 1.50 8.14 -51.93 -0.42 1.07 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.61 5.50 -51.93 -0.29 0.33 16 39 H 0.06 0.97 4.45 -51.93 -0.23 0.74 16 40 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.08 1.70 5.02 -51.93 -0.26 1.43 16 42 H 0.03 0.78 7.71 -51.93 -0.40 0.38 16 43 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 341.95 15.07 5.15 5.15 Total: -1.00 -32.44 341.95 -8.74 -41.17 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -7.30 Total: -0.05 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -0.86 Total: -12.79 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: -0.20 Total: -35.22 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.51 Total: -15.29 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.44 -8.74 -41.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172496588.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.992 kcal (2) G-P(sol) polarization free energy of solvation -32.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds