Wall clock time and date at job start Tue Mar 31 2020 05:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46742 * 2 1 4 4 C 1.52993 * 109.46864 * 239.99937 * 2 1 3 5 5 C 1.53006 * 109.47005 * 174.99966 * 4 2 1 6 6 C 1.50703 * 109.46930 * 179.97438 * 5 4 2 7 7 H 1.07990 * 120.00211 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99447 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00369 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99479 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47377 * 60.00181 * 10 8 6 12 12 H 1.48504 * 109.46679 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47270 * 299.99588 * 10 8 6 14 14 N 1.46897 * 109.47035 * 120.00125 * 2 1 3 15 15 C 1.46860 * 111.00080 * 294.99867 * 14 2 1 16 16 C 1.53146 * 109.44838 * 186.37891 * 15 14 2 17 17 C 1.52503 * 109.32653 * 301.78342 * 16 15 14 18 18 C 1.53923 * 110.26144 * 178.40255 * 17 16 15 19 19 C 1.52209 * 104.16709 * 141.72103 * 18 17 16 20 20 O 1.20763 * 127.64615 * 180.69256 * 19 18 17 21 21 C 1.52075 * 104.70574 * 0.95749 * 19 18 17 22 22 O 1.43913 * 110.28192 * 293.97766 * 17 16 15 23 23 C 1.52502 * 110.56848 * 56.22039 * 17 16 15 24 24 C 1.46856 * 111.00198 * 59.35292 * 14 2 1 25 25 H 1.08997 * 109.47449 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46695 * 300.00399 * 1 2 3 27 27 H 1.08997 * 109.47029 * 59.99838 * 1 2 3 28 28 H 1.09001 * 109.47632 * 294.99733 * 4 2 1 29 29 H 1.09007 * 109.47613 * 55.00306 * 4 2 1 30 30 H 1.08996 * 109.47012 * 299.99981 * 5 4 2 31 31 H 1.08997 * 109.47013 * 60.00191 * 5 4 2 32 32 H 0.97001 * 119.99984 * 179.97438 * 9 8 6 33 33 H 1.09004 * 109.47637 * 66.38750 * 15 14 2 34 34 H 1.08999 * 109.47842 * 306.37321 * 15 14 2 35 35 H 1.08999 * 109.49830 * 181.82579 * 16 15 14 36 36 H 1.09001 * 109.49604 * 61.73618 * 16 15 14 37 37 H 1.08992 * 110.49487 * 23.04693 * 18 17 16 38 38 H 1.09004 * 110.48923 * 260.38670 * 18 17 16 39 39 H 1.09003 * 110.29639 * 94.65520 * 21 19 18 40 40 H 1.08998 * 110.29303 * 216.77650 * 21 19 18 41 41 H 1.09001 * 109.49639 * 63.74179 * 23 17 16 42 42 H 1.08996 * 109.49379 * 183.83377 * 23 17 16 43 43 H 1.09006 * 109.47179 * 293.62225 * 24 14 2 44 44 H 1.09000 * 109.47227 * 53.62968 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3137 6 6 4.0672 -1.3243 -2.5438 7 1 3.3688 -1.8046 -3.2129 8 6 5.4186 -1.3614 -2.8150 9 7 6.2691 -0.7760 -2.0005 10 14 6.0411 -2.2421 -4.3402 11 1 5.4496 -1.6156 -5.5497 12 1 7.5212 -2.1374 -4.4027 13 1 5.6477 -3.6728 -4.2810 14 7 2.0197 -0.6925 1.1994 15 6 1.6489 0.0389 2.4177 16 6 2.3087 -0.6232 3.6308 17 6 1.8674 -2.0807 3.7124 18 6 2.5500 -2.7785 4.9026 19 6 1.4716 -3.6925 5.4670 20 8 1.5538 -4.4290 6.4205 21 6 0.2699 -3.4777 4.5601 22 8 0.4576 -2.1602 3.9908 23 6 2.1922 -2.8124 2.4144 24 6 1.5363 -2.0786 1.2411 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.7517 -1.7715 -1.2056 29 1 1.6054 -0.2617 -2.1370 30 1 3.8532 0.4369 -1.3574 31 1 3.9995 -1.0728 -0.4260 32 1 7.2198 -0.8024 -2.1911 33 1 0.5656 0.0196 2.5377 34 1 1.9875 1.0720 2.3387 35 1 2.0081 -0.1007 4.5389 36 1 3.3927 -0.5768 3.5258 37 1 2.8583 -2.0462 5.6486 38 1 3.4056 -3.3623 4.5630 39 1 0.2497 -4.2326 3.7741 40 1 -0.6522 -3.5103 5.1403 41 1 3.2724 -2.8360 2.2706 42 1 1.8092 -3.8316 2.4658 43 1 0.4538 -2.0821 1.3696 44 1 1.7932 -2.5812 0.3087 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172497037.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:57 Heat of formation + Delta-G solvation = -84.913430 kcal Electronic energy + Delta-G solvation = -23271.102595 eV Core-core repulsion = 19995.179174 eV Total energy + Delta-G solvation = -3275.923421 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.05445 -39.02539 -37.72033 -34.41105 -32.88861 -31.42783 -30.83403 -29.81994 -28.68093 -26.74402 -25.11769 -23.44234 -22.72394 -21.13668 -20.64822 -19.69342 -18.70623 -16.63617 -16.53245 -16.16365 -15.90013 -15.48486 -15.16875 -14.82043 -14.42795 -14.19837 -14.09773 -13.85532 -13.23463 -13.08705 -12.80770 -12.62858 -12.37355 -12.18660 -12.06861 -11.73035 -11.45118 -11.32629 -11.28797 -11.10870 -10.87597 -10.83741 -10.46752 -10.35369 -10.13172 -9.98263 -9.63559 -9.46406 -9.19140 -8.89715 -8.24440 -7.72169 -5.89960 -3.91409 1.46589 3.36940 3.41599 3.43856 3.54571 3.72029 4.21049 4.27571 4.37659 4.52530 4.59664 4.84776 4.96774 5.19318 5.20216 5.29321 5.39714 5.45060 5.45970 5.48929 5.56636 5.64063 5.67470 5.72410 5.82881 5.84420 6.02767 6.06243 6.18913 6.24822 6.29290 6.35585 6.44462 6.57829 6.69168 6.89722 7.00704 7.28135 7.57486 7.60763 7.83701 8.05865 8.20518 8.55660 9.17480 9.71381 11.20840 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020745 B = 0.004202 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.424892 B = 6662.539793 C = 7339.162422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.083 3.917 3 H 0.077 0.923 4 C -0.104 4.104 5 C 0.031 3.969 6 C -0.520 4.520 7 H 0.050 0.950 8 C 0.058 3.942 9 N -0.894 5.894 10 Si 0.886 3.114 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.278 1.278 14 N -0.518 5.518 15 C 0.056 3.944 16 C -0.101 4.101 17 C 0.106 3.894 18 C -0.209 4.209 19 C 0.350 3.650 20 O -0.434 6.434 21 C -0.012 4.012 22 O -0.343 6.343 23 C -0.131 4.131 24 C 0.057 3.943 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.009 0.991 31 H 0.031 0.969 32 H 0.259 0.741 33 H 0.037 0.963 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.099 0.901 40 H 0.116 0.884 41 H 0.090 0.910 42 H 0.065 0.935 43 H 0.035 0.965 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.401 -1.819 13.288 17.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.025 4.025 3 H 0.095 0.905 4 C -0.142 4.142 5 C -0.006 4.006 6 C -0.559 4.559 7 H 0.068 0.932 8 C -0.143 4.143 9 N -0.533 5.533 10 Si 0.714 3.286 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.242 5.242 15 C -0.072 4.072 16 C -0.139 4.139 17 C 0.067 3.933 18 C -0.247 4.247 19 C 0.224 3.776 20 O -0.306 6.306 21 C -0.090 4.090 22 O -0.262 6.262 23 C -0.169 4.169 24 C -0.071 4.071 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.028 0.972 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.116 0.884 40 H 0.134 0.866 41 H 0.108 0.892 42 H 0.084 0.916 43 H 0.053 0.947 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.808 -2.013 13.752 17.606 hybrid contribution -0.315 -0.580 -0.887 1.106 sum -11.123 -2.592 12.865 17.203 Atomic orbital electron populations 1.22496 0.98890 1.01614 1.01283 1.21838 0.91068 0.98600 0.91001 0.90456 1.21767 1.00818 0.98303 0.93328 1.18989 0.88044 0.96716 0.96896 1.21311 0.91822 1.34188 1.08576 0.93215 1.24978 0.97128 0.95736 0.96412 1.69965 1.02208 1.44224 1.36947 0.86769 0.77617 0.80269 0.83953 1.20416 1.21394 1.20409 1.62041 1.59411 1.01470 1.01293 1.22016 0.97787 0.97697 0.89692 1.21564 1.02002 0.91853 0.98447 1.21956 0.80792 0.97310 0.93260 1.23432 1.00206 1.01074 0.99983 1.25768 0.91118 0.78502 0.82218 1.90448 1.83123 1.33051 1.23929 1.23873 0.99409 0.88274 0.97461 1.89333 1.24410 1.30472 1.81987 1.22013 1.03229 0.98134 0.93540 1.22048 0.96585 0.89855 0.98630 0.92764 0.93349 0.92464 0.93294 0.93345 0.97243 0.95043 0.93181 0.94451 0.90843 0.91002 0.89149 0.87066 0.86587 0.88362 0.86611 0.89171 0.91644 0.94697 0.89395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.55 8.51 37.16 0.32 -2.24 16 2 C 0.08 1.37 2.35 -67.71 -0.16 1.21 16 3 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 4 C -0.10 -2.09 4.44 -26.73 -0.12 -2.21 16 5 C 0.03 0.78 4.86 -27.88 -0.14 0.64 16 6 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 7 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 10 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 N -0.52 -8.11 4.08 -226.53 -0.92 -9.03 16 15 C 0.06 0.74 4.92 -3.77 -0.02 0.72 16 16 C -0.10 -1.14 5.01 -26.91 -0.13 -1.27 16 17 C 0.11 1.14 0.69 -90.65 -0.06 1.08 16 18 C -0.21 -1.95 6.07 -26.65 -0.16 -2.11 16 19 C 0.35 3.60 8.18 -27.61 -0.23 3.37 16 20 O -0.43 -5.70 17.99 6.00 0.11 -5.59 16 21 C -0.01 -0.11 7.12 36.69 0.26 0.15 16 22 O -0.34 -3.84 10.40 -35.23 -0.37 -4.20 16 23 C -0.13 -1.60 4.83 -26.91 -0.13 -1.73 16 24 C 0.06 0.82 4.55 -3.77 -0.02 0.80 16 25 H 0.05 0.75 6.54 -51.93 -0.34 0.41 16 26 H 0.05 0.62 6.67 -51.93 -0.35 0.28 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.97 6.04 -51.93 -0.31 0.65 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.03 0.85 7.75 -51.93 -0.40 0.45 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.04 0.49 6.54 -51.93 -0.34 0.16 16 34 H 0.07 0.95 8.07 -51.93 -0.42 0.53 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.11 0.92 7.84 -51.93 -0.41 0.52 16 38 H 0.12 1.00 7.84 -51.93 -0.41 0.60 16 39 H 0.10 0.77 7.24 -51.93 -0.38 0.39 16 40 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.06 0.69 6.93 -51.93 -0.36 0.33 16 43 H 0.03 0.49 6.44 -51.93 -0.33 0.16 16 44 H 0.09 1.44 5.91 -51.93 -0.31 1.13 16 LS Contribution 337.62 15.07 5.09 5.09 Total: -1.00 -31.44 337.62 -8.65 -40.08 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -7.27 Total: -1.86 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -1.00 Total: -15.01 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: -0.19 Total: -35.18 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -0.26 Total: -9.80 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.44 -8.65 -40.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497037.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.829 kcal (2) G-P(sol) polarization free energy of solvation -31.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds