Wall clock time and date at job start Tue Mar 31 2020 05:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47218 * 2 1 4 4 C 1.52999 * 109.47153 * 239.99973 * 2 1 3 5 5 C 1.53001 * 109.47330 * 63.05794 * 4 2 1 6 6 C 1.50693 * 109.47167 * 174.80338 * 5 4 2 7 7 H 1.08002 * 120.00547 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99941 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00214 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00050 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47189 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47065 * 120.00180 * 10 8 6 13 13 H 1.48502 * 109.46911 * 239.99757 * 10 8 6 14 14 N 1.46897 * 109.47224 * 119.99735 * 2 1 3 15 15 C 1.46858 * 111.00266 * 306.11086 * 14 2 1 16 16 C 1.53139 * 109.45605 * 173.68339 * 15 14 2 17 17 C 1.52597 * 109.30364 * 58.34248 * 16 15 14 18 18 C 1.54053 * 110.03788 * 181.92058 * 17 16 15 19 19 C 1.54677 * 102.00468 * 256.05545 * 18 17 16 20 20 O 1.45889 * 104.47700 * 333.47531 * 19 18 17 21 21 C 1.34204 * 109.91058 * 30.32983 * 20 19 18 22 22 O 1.20832 * 125.18541 * 159.28161 * 21 20 19 23 23 C 1.52595 * 110.39006 * 303.56268 * 17 16 15 24 24 C 1.46853 * 111.00089 * 181.75601 * 14 2 1 25 25 H 1.09002 * 109.46953 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47241 * 299.99790 * 1 2 3 27 27 H 1.08996 * 109.47201 * 60.00552 * 1 2 3 28 28 H 1.09002 * 109.47422 * 183.05993 * 4 2 1 29 29 H 1.08996 * 109.47065 * 303.05645 * 4 2 1 30 30 H 1.09002 * 109.46739 * 294.79785 * 5 4 2 31 31 H 1.08997 * 109.47016 * 54.79555 * 5 4 2 32 32 H 0.96999 * 120.00346 * 179.97438 * 9 8 6 33 33 H 1.08989 * 109.47291 * 53.68222 * 15 14 2 34 34 H 1.09000 * 109.46800 * 293.67900 * 15 14 2 35 35 H 1.08995 * 109.49641 * 298.39109 * 16 15 14 36 36 H 1.08996 * 109.52120 * 178.30513 * 16 15 14 37 37 H 1.09001 * 110.92165 * 14.22754 * 18 17 16 38 38 H 1.08992 * 110.92502 * 137.84278 * 18 17 16 39 39 H 1.09007 * 110.43338 * 214.72911 * 19 18 17 40 40 H 1.08994 * 110.43704 * 92.22783 * 19 18 17 41 41 H 1.08998 * 109.49882 * 176.37614 * 23 17 16 42 42 H 1.08998 * 109.50237 * 296.48622 * 23 17 16 43 43 H 1.09005 * 109.47115 * 306.31173 * 24 14 2 44 44 H 1.08994 * 109.47296 * 66.31443 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5938 0.0430 -2.4973 6 6 2.2017 -0.5938 -3.7204 7 1 2.8425 -1.4571 -3.6178 8 6 1.9397 -0.0744 -4.9704 9 7 1.1589 0.9765 -5.0955 10 14 2.6937 -0.8634 -6.4865 11 1 3.5275 -2.0225 -6.0785 12 1 1.6126 -1.3255 -7.3936 13 1 3.5409 0.1311 -7.1925 14 7 2.0197 -0.6924 1.1994 15 6 1.4334 -0.1159 2.4162 16 6 1.8411 -0.9591 3.6278 17 6 3.3635 -1.0010 3.7239 18 6 3.7934 -1.8852 4.9099 19 6 4.2099 -0.8311 5.9626 20 8 4.6101 0.3310 5.1765 21 6 3.9114 0.3708 4.0314 22 8 3.7459 1.3552 3.3506 23 6 3.9634 -1.5375 2.4274 24 6 3.4871 -0.6757 1.2546 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 3.1286 -0.7690 -1.2223 29 1 1.6326 -1.7318 -1.2770 30 1 0.5069 0.0114 -2.5734 31 1 1.9231 1.0796 -2.4256 32 1 0.9749 1.3421 -5.9748 33 1 0.3471 -0.1084 2.3277 34 1 1.7945 0.9043 2.5454 35 1 1.4558 -1.9721 3.5123 36 1 1.4314 -0.5151 4.5350 37 1 2.9585 -2.4862 5.2701 38 1 4.6376 -2.5185 4.6374 39 1 5.0483 -1.1963 6.5558 40 1 3.3665 -0.5827 6.6067 41 1 5.0512 -1.5010 2.4874 42 1 3.6412 -2.5677 2.2763 43 1 3.8902 -1.0743 0.3235 44 1 3.8339 0.3484 1.3917 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172498191.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:52 Heat of formation + Delta-G solvation = -91.365788 kcal Electronic energy + Delta-G solvation = -23163.363422 eV Core-core repulsion = 19887.160205 eV Total energy + Delta-G solvation = -3276.203217 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.77147 -38.69623 -37.56381 -35.70161 -33.36747 -31.84711 -31.19802 -29.77290 -28.34059 -25.91071 -25.16180 -23.06471 -22.80178 -22.21542 -21.08522 -19.57418 -19.12284 -17.21932 -16.84525 -16.55828 -16.15261 -15.31801 -14.88669 -14.70537 -14.42613 -14.10372 -14.03809 -13.93535 -13.51164 -13.02003 -12.66268 -12.57149 -12.42777 -12.33081 -12.08125 -11.93308 -11.47511 -11.22345 -11.11638 -11.04804 -10.96888 -10.76765 -10.63470 -10.50822 -10.31272 -10.02913 -9.84876 -9.49238 -9.23109 -8.93788 -8.28335 -7.87278 -5.94470 -3.96029 1.90542 2.99758 3.34354 3.41630 3.45981 3.65740 3.91228 4.20001 4.22037 4.38960 4.51249 4.66119 4.76303 5.00798 5.13619 5.22725 5.33260 5.41276 5.42131 5.47166 5.51214 5.60313 5.63669 5.65930 5.78383 5.98170 6.03051 6.04457 6.17068 6.20042 6.40869 6.49948 6.53474 6.71227 6.81470 6.85622 7.21518 7.34855 7.49191 7.55863 7.76061 7.92454 8.06846 8.50539 9.11539 9.67534 11.16960 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032734 B = 0.003513 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.183714 B = 7967.821066 C = 8213.749892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.082 3.918 3 H 0.036 0.964 4 C -0.100 4.100 5 C 0.022 3.978 6 C -0.517 4.517 7 H 0.054 0.946 8 C 0.055 3.945 9 N -0.896 5.896 10 Si 0.890 3.110 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.285 1.285 14 N -0.529 5.529 15 C 0.038 3.962 16 C -0.093 4.093 17 C -0.121 4.121 18 C -0.149 4.149 19 C 0.053 3.947 20 O -0.351 6.351 21 C 0.487 3.513 22 O -0.439 6.439 23 C -0.092 4.092 24 C 0.040 3.960 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.020 0.980 31 H 0.012 0.988 32 H 0.259 0.741 33 H 0.082 0.918 34 H 0.047 0.953 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.347 -6.739 24.142 25.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.025 4.025 3 H 0.054 0.946 4 C -0.138 4.138 5 C -0.016 4.016 6 C -0.555 4.555 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.718 3.282 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.211 1.211 14 N -0.254 5.254 15 C -0.090 4.090 16 C -0.131 4.131 17 C -0.123 4.123 18 C -0.187 4.187 19 C -0.021 4.021 20 O -0.269 6.269 21 C 0.326 3.674 22 O -0.321 6.321 23 C -0.130 4.130 24 C -0.087 4.087 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.038 0.962 31 H 0.031 0.969 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.065 0.935 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.127 0.873 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.200 -6.477 23.730 24.805 hybrid contribution 0.634 0.381 -0.794 1.085 sum 3.833 -6.096 22.936 24.039 Atomic orbital electron populations 1.21927 0.94843 1.02003 1.01292 1.21754 0.95301 0.95677 0.89775 0.94607 1.21712 0.99360 0.99364 0.93377 1.19134 0.96760 0.95144 0.90533 1.21308 1.29139 1.13589 0.91463 0.92727 1.25024 0.95352 0.95079 0.99080 1.69976 1.37279 1.23010 1.23310 0.86567 0.79064 0.79343 0.83211 1.19762 1.21064 1.21097 1.62032 1.06206 1.55342 1.01867 1.22285 1.00336 0.96806 0.89594 1.21477 0.90682 1.02551 0.98345 1.21728 0.99135 0.93239 0.98228 1.23073 1.03574 0.97830 0.94200 1.24137 1.01812 0.82813 0.93338 1.87069 1.59120 1.48052 1.32620 1.23011 0.74725 0.90194 0.79421 1.90712 1.53026 1.38345 1.50000 1.21473 0.99301 1.00926 0.91302 1.22258 0.88832 0.99150 0.98499 0.92287 0.93835 0.91128 0.93372 0.92754 0.96217 0.96921 0.93152 0.89958 0.93483 0.89521 0.91669 0.88269 0.88930 0.87263 0.89770 0.91340 0.89458 0.89396 0.93605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.49 37.16 0.32 -2.12 16 2 C 0.08 1.52 2.17 -67.71 -0.15 1.37 16 3 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 4 C -0.10 -2.15 4.56 -26.73 -0.12 -2.27 16 5 C 0.02 0.57 4.55 -27.89 -0.13 0.45 16 6 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 7 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -27.43 13.29 55.43 0.74 -26.70 16 10 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 13 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 14 N -0.53 -8.24 4.51 -226.55 -1.02 -9.26 16 15 C 0.04 0.51 4.87 -3.78 -0.02 0.49 16 16 C -0.09 -0.92 4.71 -26.87 -0.13 -1.05 16 17 C -0.12 -1.19 0.64 -155.44 -0.10 -1.29 16 18 C -0.15 -0.86 6.36 -25.30 -0.16 -1.02 16 19 C 0.05 0.31 7.91 38.04 0.30 0.61 16 20 O -0.35 -3.91 11.06 -38.83 -0.43 -4.34 16 21 C 0.49 6.26 6.99 36.10 0.25 6.51 16 22 O -0.44 -7.36 13.90 -18.40 -0.26 -7.61 16 23 C -0.09 -1.02 4.72 -26.87 -0.13 -1.15 16 24 C 0.04 0.61 5.03 -3.78 -0.02 0.59 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.04 0.64 6.19 -51.93 -0.32 0.32 16 27 H 0.07 1.32 6.62 -51.93 -0.34 0.98 16 28 H 0.05 1.03 6.16 -51.93 -0.32 0.71 16 29 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.02 0.54 6.78 -51.93 -0.35 0.19 16 31 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.08 1.06 5.84 -51.94 -0.30 0.76 16 34 H 0.05 0.74 6.05 -51.93 -0.31 0.42 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.10 0.39 7.78 -51.93 -0.40 -0.01 16 38 H 0.09 0.45 7.79 -51.93 -0.40 0.05 16 39 H 0.11 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.09 1.40 5.98 -51.93 -0.31 1.09 16 44 H 0.05 0.78 6.20 -51.93 -0.32 0.46 16 LS Contribution 332.04 15.07 5.00 5.00 Total: -1.00 -33.33 332.04 -8.64 -41.98 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -7.16 Total: -3.50 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -0.49 Total: -12.61 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: -0.29 Total: -35.95 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: -0.69 Total: -11.95 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.33 -8.64 -41.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172498191.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.390 kcal (2) G-P(sol) polarization free energy of solvation -33.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds