Wall clock time and date at job start Tue Mar 31 2020 05:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47567 * 2 1 4 4 C 1.52999 * 109.47036 * 119.99909 * 2 1 3 5 5 C 1.53007 * 109.47159 * 183.99176 * 4 2 1 6 6 C 1.50701 * 109.46847 * 180.02562 * 5 4 2 7 7 H 1.07993 * 120.00527 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99811 * 180.02562 * 6 5 4 9 9 N 1.31523 * 120.00047 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00325 * 179.97438 * 8 6 5 11 11 H 1.48509 * 109.47291 * 89.99507 * 10 8 6 12 12 H 1.48494 * 109.47630 * 209.99520 * 10 8 6 13 13 H 1.48501 * 109.47194 * 329.99597 * 10 8 6 14 14 N 1.46901 * 109.47571 * 239.99744 * 2 1 3 15 15 C 1.46855 * 110.99947 * 71.00931 * 14 2 1 16 16 C 1.53136 * 109.45833 * 173.68687 * 15 14 2 17 17 C 1.52600 * 109.30369 * 58.34691 * 16 15 14 18 18 C 1.54222 * 109.93951 * 181.90660 * 17 16 15 19 19 C 1.54678 * 101.92041 * 255.92928 * 18 17 16 20 20 O 1.45882 * 104.58725 * 333.62361 * 19 18 17 21 21 C 1.34207 * 109.90927 * 30.26125 * 20 19 18 22 22 O 1.20832 * 125.18390 * 159.28774 * 21 20 19 23 23 C 1.52599 * 110.38512 * 303.56516 * 17 16 15 24 24 C 1.46850 * 110.99823 * 306.65809 * 14 2 1 25 25 H 1.09002 * 109.47384 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47195 * 300.00047 * 1 2 3 27 27 H 1.09006 * 109.47156 * 60.00141 * 1 2 3 28 28 H 1.09000 * 109.47413 * 303.99169 * 4 2 1 29 29 H 1.08999 * 109.47320 * 63.99157 * 4 2 1 30 30 H 1.09003 * 109.46943 * 299.99503 * 5 4 2 31 31 H 1.08999 * 109.47021 * 59.99798 * 5 4 2 32 32 H 0.97000 * 119.99884 * 180.02562 * 9 8 6 33 33 H 1.09005 * 109.47254 * 53.69523 * 15 14 2 34 34 H 1.08997 * 109.47992 * 293.68758 * 15 14 2 35 35 H 1.09004 * 109.49950 * 298.39718 * 16 15 14 36 36 H 1.09000 * 109.49827 * 178.29671 * 16 15 14 37 37 H 1.09000 * 110.89379 * 137.81760 * 18 17 16 38 38 H 1.08997 * 111.03831 * 14.11020 * 18 17 16 39 39 H 1.09004 * 110.43652 * 214.80979 * 19 18 17 40 40 H 1.09001 * 110.43420 * 92.43177 * 19 18 17 41 41 H 1.08996 * 109.50020 * 176.37756 * 23 17 16 42 42 H 1.09007 * 109.49829 * 296.48611 * 23 17 16 43 43 H 1.08991 * 109.47691 * 306.31120 * 24 14 2 44 44 H 1.09006 * 109.47120 * 66.31552 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5667 -0.6349 1.3005 6 6 4.0690 -1.3458 2.5307 7 1 3.3693 -1.8122 3.2084 8 6 5.4218 -1.3999 2.7915 9 7 6.2738 -0.8315 1.9665 10 14 6.0444 -2.2805 4.3167 11 1 6.3017 -3.7072 3.9943 12 1 7.3036 -1.6424 4.7774 13 1 5.0230 -2.1923 5.3909 14 7 2.0197 -0.6925 -1.1994 15 6 1.7746 0.1077 -2.4061 16 6 2.4354 -0.5695 -3.6102 17 6 1.8727 -1.9791 -3.7679 18 6 2.5632 -2.6921 -4.9483 19 6 1.4727 -2.6266 -6.0432 20 8 0.2160 -2.5512 -5.3062 21 6 0.4101 -1.9259 -4.1347 22 8 -0.4546 -1.4001 -3.4745 23 6 2.0724 -2.7780 -2.4832 24 6 1.4235 -2.0295 -1.3154 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6194 -0.2504 2.1378 29 1 1.7362 -1.7675 1.2142 30 1 3.9872 -1.1058 0.4120 31 1 3.8704 0.4114 1.3355 32 1 7.2256 -0.8700 2.1498 33 1 2.1959 1.1042 -2.2731 34 1 0.7011 0.1870 -2.5778 35 1 3.5125 -0.6233 -3.4515 36 1 2.2284 0.0079 -4.5112 37 1 2.7982 -3.7257 -4.6943 38 1 3.4597 -2.1556 -5.2591 39 1 1.4986 -3.5247 -6.6604 40 1 1.6058 -1.7380 -6.6603 41 1 1.6092 -3.7589 -2.5890 42 1 3.1388 -2.8974 -2.2911 43 1 1.5900 -2.5831 -0.3914 44 1 0.3524 -1.9354 -1.4946 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172498197.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:54 Heat of formation + Delta-G solvation = -90.985081 kcal Electronic energy + Delta-G solvation = -23606.900540 eV Core-core repulsion = 20330.713832 eV Total energy + Delta-G solvation = -3276.186708 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.67562 -38.73056 -37.48213 -35.56634 -33.17194 -31.68090 -30.87731 -29.67639 -28.54150 -25.76048 -24.96091 -23.32160 -22.66837 -22.15193 -20.96040 -19.71005 -18.77942 -17.11293 -16.70291 -16.17352 -16.07925 -15.56183 -14.88749 -14.49607 -14.36117 -14.03924 -13.87767 -13.70427 -13.29562 -12.89158 -12.69891 -12.47597 -12.32849 -12.17135 -12.02084 -11.74549 -11.63337 -11.32951 -11.21534 -10.91354 -10.87390 -10.82261 -10.43539 -10.38753 -10.25271 -9.93760 -9.81520 -9.53632 -9.13727 -8.85188 -8.21452 -7.60988 -5.87350 -3.88232 1.97970 3.07927 3.37366 3.43581 3.47214 3.78503 4.04385 4.34152 4.35657 4.51057 4.55043 4.79075 4.90199 5.11289 5.28190 5.38169 5.46177 5.48081 5.53977 5.56683 5.60501 5.67740 5.74507 5.81214 5.85877 5.88097 6.06752 6.12769 6.24080 6.32288 6.36548 6.43381 6.53154 6.62385 6.75278 6.95224 7.34243 7.41609 7.63293 7.67658 7.87555 8.10515 8.25042 8.59640 9.20966 9.74280 11.23589 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024304 B = 0.004355 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.785334 B = 6428.212347 C = 6995.705260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.084 3.916 3 H 0.075 0.925 4 C -0.102 4.102 5 C 0.031 3.969 6 C -0.518 4.518 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.885 3.115 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.275 1.275 14 N -0.513 5.513 15 C 0.043 3.957 16 C -0.094 4.094 17 C -0.120 4.120 18 C -0.150 4.150 19 C 0.054 3.946 20 O -0.353 6.353 21 C 0.489 3.511 22 O -0.443 6.443 23 C -0.094 4.094 24 C 0.043 3.957 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.032 0.968 31 H 0.008 0.992 32 H 0.257 0.743 33 H 0.074 0.926 34 H 0.047 0.953 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.109 0.891 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.362 -2.406 -17.151 19.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.024 4.024 3 H 0.093 0.907 4 C -0.140 4.140 5 C -0.006 4.006 6 C -0.556 4.556 7 H 0.068 0.932 8 C -0.143 4.143 9 N -0.535 5.535 10 Si 0.714 3.286 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.200 1.200 14 N -0.237 5.237 15 C -0.085 4.085 16 C -0.132 4.132 17 C -0.122 4.122 18 C -0.187 4.187 19 C -0.021 4.021 20 O -0.270 6.270 21 C 0.329 3.671 22 O -0.326 6.326 23 C -0.132 4.132 24 C -0.085 4.085 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.027 0.973 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.119 0.881 39 H 0.127 0.873 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.110 0.890 43 H 0.104 0.896 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.281 -2.256 -16.894 18.949 hybrid contribution -0.263 -0.401 0.715 0.861 sum -8.544 -2.657 -16.179 18.488 Atomic orbital electron populations 1.22472 0.98657 1.01775 1.01170 1.21826 0.91233 0.98330 0.91057 0.90661 1.21717 1.00720 0.98262 0.93256 1.18987 0.88083 0.96648 0.96901 1.21364 0.91682 1.34297 1.08267 0.93175 1.24982 0.97136 0.95802 0.96412 1.69984 1.01973 1.44771 1.36742 0.86706 0.78271 0.79820 0.83833 1.20836 1.21374 1.20048 1.62052 1.58186 1.01951 1.01504 1.22189 0.99165 0.97022 0.90097 1.21481 1.01983 0.91618 0.98087 1.21743 0.92679 0.99534 0.98198 1.23107 0.98824 1.03005 0.93770 1.24137 0.79851 1.04009 0.94082 1.87049 1.36394 1.71216 1.32342 1.23049 0.90808 0.73753 0.79508 1.90674 1.51281 1.37970 1.52629 1.21488 1.03607 0.96817 0.91307 1.22235 0.96844 0.90860 0.98516 0.92657 0.92627 0.93307 0.93416 0.93451 0.94984 0.97322 0.93302 0.90772 0.93465 0.89135 0.91802 0.88894 0.88132 0.87332 0.89812 0.91561 0.88991 0.89625 0.93562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.88 8.44 37.15 0.31 -2.57 16 2 C 0.08 1.50 2.31 -67.72 -0.16 1.34 16 3 H 0.08 1.38 7.96 -51.93 -0.41 0.97 16 4 C -0.10 -2.15 4.55 -26.73 -0.12 -2.27 16 5 C 0.03 0.81 4.85 -27.88 -0.14 0.67 16 6 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 7 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 10 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 N -0.51 -8.70 3.99 -226.56 -0.90 -9.60 16 15 C 0.04 0.63 4.91 -3.78 -0.02 0.62 16 16 C -0.09 -1.11 4.71 -26.87 -0.13 -1.23 16 17 C -0.12 -1.35 0.64 -155.34 -0.10 -1.45 16 18 C -0.15 -1.12 6.37 -25.21 -0.16 -1.28 16 19 C 0.05 0.37 7.90 38.04 0.30 0.67 16 20 O -0.35 -4.13 11.06 -38.84 -0.43 -4.56 16 21 C 0.49 6.53 6.99 36.09 0.25 6.78 16 22 O -0.44 -7.31 13.90 -18.40 -0.26 -7.56 16 23 C -0.09 -1.23 4.73 -26.86 -0.13 -1.36 16 24 C 0.04 0.69 4.28 -3.78 -0.02 0.67 16 25 H 0.05 0.89 6.46 -51.93 -0.34 0.55 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.75 6.86 -51.93 -0.36 0.40 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.05 0.99 6.28 -51.93 -0.33 0.67 16 30 H 0.03 0.89 7.72 -51.93 -0.40 0.49 16 31 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.07 1.06 8.00 -51.93 -0.42 0.65 16 34 H 0.05 0.73 4.84 -51.93 -0.25 0.48 16 35 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.63 7.80 -51.93 -0.40 0.22 16 38 H 0.10 0.60 7.78 -51.93 -0.40 0.20 16 39 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.09 1.26 8.14 -51.92 -0.42 0.84 16 43 H 0.09 1.48 6.16 -51.93 -0.32 1.16 16 44 H 0.05 0.76 4.66 -51.93 -0.24 0.52 16 LS Contribution 332.20 15.07 5.01 5.01 Total: -1.00 -32.88 332.20 -8.59 -41.47 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -7.22 Total: -2.17 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -0.51 Total: -13.06 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: -0.17 Total: -36.08 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -0.69 Total: -12.12 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.88 -8.59 -41.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172498197.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.511 kcal (2) G-P(sol) polarization free energy of solvation -32.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds