Wall clock time and date at job start Tue Mar 31 2020 05:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.47290 * 2 1 4 4 C 1.52996 * 109.47006 * 120.00054 * 2 1 3 5 5 C 1.52998 * 109.46929 * 185.00107 * 4 2 1 6 6 C 1.50706 * 109.47348 * 179.97438 * 5 4 2 7 7 H 1.08005 * 119.99758 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00102 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00217 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99766 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47483 * 269.99808 * 10 8 6 12 12 H 1.48499 * 109.47134 * 30.00322 * 10 8 6 13 13 H 1.48507 * 109.46904 * 150.00145 * 10 8 6 14 14 N 1.46900 * 109.47213 * 239.99872 * 2 1 3 15 15 C 1.46845 * 110.99881 * 306.04775 * 14 2 1 16 16 C 1.53041 * 109.60512 * 186.09402 * 15 14 2 17 17 C 1.53189 * 109.23722 * 300.52885 * 16 15 14 18 18 C 1.52808 * 109.15508 * 57.11003 * 17 16 15 19 19 C 1.53974 * 109.73405 * 182.21947 * 18 17 16 20 20 C 1.54611 * 102.98293 * 239.62644 * 19 18 17 21 21 C 1.51810 * 103.53553 * 343.54901 * 20 19 18 22 22 O 1.20818 * 126.41477 * 210.41450 * 21 20 19 23 23 O 1.34611 * 107.17718 * 30.43194 * 21 20 19 24 24 C 1.46918 * 110.99852 * 70.21328 * 14 2 1 25 25 H 1.08999 * 109.47043 * 300.00033 * 1 2 3 26 26 H 1.08992 * 109.46757 * 60.00015 * 1 2 3 27 27 H 1.08999 * 109.47047 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47441 * 65.00197 * 4 2 1 29 29 H 1.09002 * 109.47087 * 304.99643 * 4 2 1 30 30 H 1.09001 * 109.47671 * 60.00109 * 5 4 2 31 31 H 1.09006 * 109.47297 * 299.99829 * 5 4 2 32 32 H 0.97001 * 119.99646 * 359.97438 * 9 8 6 33 33 H 1.08996 * 109.45476 * 306.13540 * 15 14 2 34 34 H 1.09003 * 109.45159 * 66.08115 * 15 14 2 35 35 H 1.08997 * 109.50925 * 60.46069 * 16 15 14 36 36 H 1.09003 * 109.50801 * 180.60622 * 16 15 14 37 37 H 1.08998 * 109.51898 * 177.01161 * 17 16 15 38 38 H 1.08996 * 109.52250 * 297.14406 * 17 16 15 39 39 H 1.09002 * 110.70952 * 357.99155 * 19 18 17 40 40 H 1.08993 * 110.71668 * 121.25216 * 19 18 17 41 41 H 1.09003 * 110.60889 * 225.03960 * 20 19 18 42 42 H 1.08991 * 110.74600 * 102.12878 * 20 19 18 43 43 H 1.09001 * 109.45952 * 294.78810 * 24 14 2 44 44 H 1.08999 * 109.46138 * 54.74995 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6133 1.3137 6 6 4.0672 -1.3231 2.5445 7 1 3.3687 -1.8030 3.2140 8 6 5.4185 -1.3601 2.8157 9 7 6.2691 -0.7753 2.0007 10 14 6.0410 -2.2394 4.3417 11 1 6.0917 -1.2841 5.4776 12 1 5.1243 -3.3586 4.6767 13 1 7.4021 -2.7745 4.0840 14 7 2.0198 -0.6925 -1.1994 15 6 1.4346 -2.0350 -1.3077 16 6 2.0778 -2.7826 -2.4780 17 6 1.8338 -2.0001 -3.7721 18 6 2.3928 -0.5865 -3.6162 19 6 2.1053 0.2297 -4.8897 20 6 3.5188 0.6261 -5.3748 21 6 4.3936 0.3804 -4.1587 22 8 5.4008 0.9804 -3.8667 23 8 3.8374 -0.6314 -3.4667 24 6 1.7575 0.0996 -2.4086 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.7517 -1.7715 1.2056 29 1 1.6054 -0.2617 2.1369 30 1 3.8533 0.4370 1.3573 31 1 3.9995 -1.0728 0.4259 32 1 5.9457 -0.3184 1.2085 33 1 1.6135 -2.5846 -0.3837 34 1 0.3612 -1.9504 -1.4776 35 1 3.1500 -2.8756 -2.3053 36 1 1.6347 -3.7749 -2.5636 37 1 2.3350 -2.5007 -4.6004 38 1 0.7633 -1.9496 -3.9709 39 1 1.6001 -0.3844 -5.6353 40 1 1.5157 1.1158 -4.6549 41 1 3.5455 1.6777 -5.6604 42 1 3.8324 -0.0043 -6.2067 43 1 0.6816 0.1823 -2.5623 44 1 2.1848 1.0953 -2.2903 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172499035.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:07 Heat of formation + Delta-G solvation = -92.502216 kcal Electronic energy + Delta-G solvation = -23676.355933 eV Core-core repulsion = 20400.103437 eV Total energy + Delta-G solvation = -3276.252496 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.31380 -38.96553 -37.32486 -34.79513 -33.27435 -32.84776 -30.90277 -29.80094 -28.73960 -25.05511 -24.91611 -23.84852 -22.21946 -21.72959 -21.37229 -19.87550 -18.75011 -16.87553 -16.59335 -16.44479 -16.22333 -15.69146 -15.03540 -14.49595 -14.27525 -13.95054 -13.62124 -13.58450 -13.26765 -13.14001 -12.86928 -12.71629 -12.40500 -12.25062 -12.08395 -11.82536 -11.69073 -11.52660 -11.16861 -10.96681 -10.84019 -10.67153 -10.56660 -10.20187 -10.08858 -10.04194 -9.93614 -9.67733 -9.48185 -8.30445 -8.12309 -7.84609 -6.14287 -3.82352 1.99230 3.36361 3.52982 3.57597 3.73212 3.78705 4.03840 4.20282 4.30565 4.54458 4.69888 4.74358 4.83258 5.04267 5.18243 5.26315 5.30644 5.31716 5.39562 5.45898 5.48239 5.53800 5.55564 5.62665 5.65717 5.68365 5.82535 5.87177 6.03891 6.18893 6.21504 6.29257 6.48265 6.57003 6.77262 6.93006 7.18381 7.42378 7.45600 7.55243 7.73352 7.94736 8.45422 8.70585 9.11885 9.90323 11.26714 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017173 B = 0.005269 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.084769 B = 5312.839368 C = 6149.071622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.080 3.920 3 H 0.075 0.925 4 C -0.093 4.093 5 C 0.017 3.983 6 C -0.603 4.603 7 H 0.043 0.957 8 C 0.013 3.987 9 N -0.915 5.915 10 Si 1.069 2.931 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.285 1.285 14 N -0.510 5.510 15 C 0.051 3.949 16 C -0.119 4.119 17 C -0.110 4.110 18 C 0.118 3.882 19 C -0.146 4.146 20 C -0.187 4.187 21 C 0.479 3.521 22 O -0.444 6.444 23 O -0.319 6.319 24 C 0.047 3.953 25 H 0.059 0.941 26 H 0.045 0.955 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.049 0.951 30 H -0.002 1.002 31 H 0.025 0.975 32 H 0.272 0.728 33 H 0.087 0.913 34 H 0.029 0.971 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.105 0.895 42 H 0.112 0.888 43 H 0.050 0.950 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.890 0.177 -16.759 22.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.028 4.028 3 H 0.094 0.906 4 C -0.131 4.131 5 C -0.020 4.020 6 C -0.641 4.641 7 H 0.061 0.939 8 C -0.191 4.191 9 N -0.551 5.551 10 Si 0.898 3.102 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.211 1.211 14 N -0.234 5.234 15 C -0.076 4.076 16 C -0.156 4.156 17 C -0.148 4.148 18 C 0.080 3.920 19 C -0.184 4.184 20 C -0.226 4.226 21 C 0.318 3.682 22 O -0.325 6.325 23 O -0.236 6.236 24 C -0.081 4.081 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.016 0.984 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.048 0.952 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.123 0.877 42 H 0.130 0.870 43 H 0.068 0.932 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.414 -0.141 -15.580 19.922 hybrid contribution -2.376 0.632 -1.012 2.658 sum -14.790 0.491 -16.592 22.233 Atomic orbital electron populations 1.22502 0.98652 1.01785 1.01342 1.21909 0.91197 0.98515 0.91160 0.90646 1.21578 1.00078 0.98413 0.93032 1.19118 0.89683 0.95894 0.97350 1.22127 0.94473 1.37986 1.09524 0.93877 1.25751 0.93560 0.97068 1.02689 1.70693 1.37399 1.33246 1.13797 0.83566 0.75692 0.75906 0.75053 1.21706 1.21710 1.21129 1.61998 1.58688 1.01895 1.00777 1.22171 0.95236 0.90438 0.99772 1.21600 1.03358 0.97637 0.93046 1.21735 1.00462 0.92994 0.99595 1.22630 0.77517 0.97328 0.94512 1.22943 0.96896 1.01425 0.97150 1.23088 0.95261 1.05350 0.98896 1.23325 0.84403 0.76639 0.83800 1.90730 1.24788 1.44189 1.72814 1.87275 1.20936 1.45965 1.69405 1.22460 0.97938 0.97461 0.90267 0.92161 0.93583 0.92416 0.93123 0.93196 0.98395 0.95636 0.91705 0.89510 0.95248 0.89874 0.91385 0.90749 0.90292 0.88609 0.89158 0.87662 0.87000 0.93185 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.44 8.44 37.16 0.31 -2.12 16 2 C 0.08 1.36 2.31 -67.71 -0.16 1.21 16 3 H 0.08 1.35 7.99 -51.93 -0.42 0.94 16 4 C -0.09 -1.97 4.55 -26.73 -0.12 -2.09 16 5 C 0.02 0.45 4.17 -27.88 -0.12 0.33 16 6 C -0.60 -18.10 9.11 -34.44 -0.31 -18.41 16 7 H 0.04 1.27 7.74 -52.48 -0.41 0.86 16 8 C 0.01 0.40 5.46 -17.82 -0.10 0.31 16 9 N -0.91 -30.06 13.65 55.43 0.76 -29.31 16 10 Si 1.07 26.80 29.90 -169.99 -5.08 21.71 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 14 N -0.51 -8.33 4.01 -226.83 -0.91 -9.24 16 15 C 0.05 0.74 4.52 -3.83 -0.02 0.72 16 16 C -0.12 -1.51 5.98 -26.61 -0.16 -1.67 16 17 C -0.11 -1.10 4.81 -26.73 -0.13 -1.22 16 18 C 0.12 1.36 0.80 -90.35 -0.07 1.29 16 19 C -0.15 -1.11 6.37 -25.38 -0.16 -1.27 16 20 C -0.19 -1.67 6.99 -26.49 -0.19 -1.86 16 21 C 0.48 7.33 8.58 36.55 0.31 7.64 16 22 O -0.44 -8.73 18.00 -18.27 -0.33 -9.06 16 23 O -0.32 -5.15 10.01 -39.83 -0.40 -5.55 16 24 C 0.05 0.61 3.92 -3.96 -0.02 0.60 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.53 6.81 -51.93 -0.35 0.17 16 27 H 0.06 0.74 6.47 -51.93 -0.34 0.40 16 28 H 0.05 1.06 6.22 -51.93 -0.32 0.73 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.00 -0.07 8.01 -51.93 -0.42 -0.48 16 31 H 0.03 0.74 7.62 -51.93 -0.40 0.35 16 32 H 0.27 9.09 7.22 -40.82 -0.29 8.80 16 33 H 0.09 1.43 6.12 -51.93 -0.32 1.11 16 34 H 0.03 0.36 6.59 -51.93 -0.34 0.02 16 35 H 0.08 1.33 7.92 -51.93 -0.41 0.92 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.10 0.50 7.70 -51.93 -0.40 0.10 16 40 H 0.09 0.57 7.70 -51.93 -0.40 0.17 16 41 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.05 0.53 6.85 -51.93 -0.36 0.18 16 44 H 0.08 1.07 8.03 -51.93 -0.42 0.65 16 LS Contribution 338.88 15.07 5.11 5.11 Total: -1.00 -36.24 338.88 -9.11 -45.35 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -7.34 Total: -2.47 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -0.92 Total: -16.55 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: -0.15 Total: -38.55 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.73 Total: -14.61 kcal Atomic # 14 Polarization: 26.80 SS G_CDS: -5.08 Total: 21.71 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.24 -9.11 -45.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499035.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.154 kcal (2) G-P(sol) polarization free energy of solvation -36.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds