Wall clock time and date at job start Tue Mar 31 2020 05:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46621 * 2 1 4 4 C 1.53005 * 109.47172 * 119.99103 * 2 1 3 5 5 C 1.52997 * 109.47139 * 183.82163 * 4 2 1 6 6 C 1.50702 * 109.47309 * 175.93697 * 5 4 2 7 7 H 1.08003 * 119.99533 * 0.02562 * 6 5 4 8 8 C 1.37869 * 119.99987 * 180.02562 * 6 5 4 9 9 N 1.31524 * 119.99806 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00432 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.47107 * 89.99932 * 10 8 6 12 12 H 1.48502 * 109.47535 * 209.99909 * 10 8 6 13 13 H 1.48501 * 109.46956 * 330.00054 * 10 8 6 14 14 N 1.46897 * 109.47477 * 239.99567 * 2 1 3 15 15 C 1.46817 * 110.98194 * 72.88159 * 14 2 1 16 16 C 1.53035 * 109.60056 * 173.89800 * 15 14 2 17 17 C 1.53187 * 109.22935 * 59.47378 * 16 15 14 18 18 C 1.52806 * 109.15505 * 302.87840 * 17 16 15 19 19 C 1.53976 * 109.72372 * 177.80315 * 18 17 16 20 20 C 1.54604 * 102.98998 * 118.38848 * 19 18 17 21 21 C 1.51815 * 103.53139 * 343.55417 * 20 19 18 22 22 O 1.20830 * 126.41088 * 210.45392 * 21 20 19 23 23 O 1.34606 * 107.18088 * 30.43083 * 21 20 19 24 24 C 1.46909 * 110.99792 * 308.70136 * 14 2 1 25 25 H 1.08997 * 109.47574 * 300.00165 * 1 2 3 26 26 H 1.08994 * 109.47381 * 60.00995 * 1 2 3 27 27 H 1.09004 * 109.46649 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47188 * 303.82582 * 4 2 1 29 29 H 1.08999 * 109.46354 * 63.82616 * 4 2 1 30 30 H 1.08994 * 109.47611 * 295.94141 * 5 4 2 31 31 H 1.09007 * 109.46981 * 55.94286 * 5 4 2 32 32 H 0.97002 * 119.99753 * 179.97438 * 9 8 6 33 33 H 1.09000 * 109.45144 * 53.85764 * 15 14 2 34 34 H 1.09002 * 109.42607 * 293.92482 * 15 14 2 35 35 H 1.09004 * 109.51340 * 299.55121 * 16 15 14 36 36 H 1.08995 * 109.55463 * 179.42201 * 16 15 14 37 37 H 1.09000 * 109.52348 * 182.97287 * 17 16 15 38 38 H 1.09003 * 109.57696 * 62.81516 * 17 16 15 39 39 H 1.09005 * 110.70722 * 236.76208 * 19 18 17 40 40 H 1.09001 * 110.71777 * 0.02562 * 19 18 17 41 41 H 1.09000 * 110.61318 * 225.04293 * 20 19 18 42 42 H 1.09005 * 110.74674 * 102.12529 * 20 19 18 43 43 H 1.08998 * 109.46212 * 65.20677 * 24 14 2 44 44 H 1.08999 * 109.46226 * 305.22686 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5670 -0.6383 1.2984 6 6 4.0630 -1.2608 2.5780 7 1 3.3595 -1.6745 3.2854 8 6 5.4148 -1.3022 2.8457 9 7 5.8478 -1.8459 3.9623 10 14 6.6316 -0.5861 1.6226 11 1 6.8655 0.8461 1.9378 12 1 7.9152 -1.3279 1.7090 13 1 6.0815 -0.7071 0.2485 14 7 2.0197 -0.6926 -1.1993 15 6 1.8146 0.1268 -2.4002 16 6 2.4696 -0.5538 -3.6042 17 6 1.8446 -1.9382 -3.8028 18 6 2.0122 -2.7526 -2.5208 19 6 1.3398 -4.1278 -2.6871 20 6 2.5196 -5.1135 -2.5240 21 6 3.7442 -4.2351 -2.7069 22 8 4.8101 -4.5762 -3.1626 23 8 3.4204 -3.0049 -2.2668 24 6 1.3867 -2.0106 -1.3415 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5136 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6218 -0.2483 2.1379 29 1 1.7337 -1.7666 1.2158 30 1 3.9874 -1.1737 0.4471 31 1 3.8757 0.4064 1.2591 32 1 6.7989 -1.8754 4.1504 33 1 2.2628 1.1091 -2.2503 34 1 0.7461 0.2397 -2.5839 35 1 3.5396 -0.6598 -3.4250 36 1 2.3080 0.0500 -4.4971 37 1 2.3440 -2.4485 -4.6264 38 1 0.7840 -1.8309 -4.0303 39 1 0.5930 -4.2883 -1.9094 40 1 0.8934 -4.2216 -3.6771 41 1 2.4833 -5.8859 -3.2922 42 1 2.5139 -5.5616 -1.5304 43 1 0.3186 -1.8835 -1.5177 44 1 1.5382 -2.5866 -0.4286 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172499039.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:10 Heat of formation + Delta-G solvation = -86.659767 kcal Electronic energy + Delta-G solvation = -23892.442540 eV Core-core repulsion = 20616.443392 eV Total energy + Delta-G solvation = -3275.999148 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.30792 -39.00018 -37.27265 -34.87097 -33.16177 -32.71798 -30.84565 -30.11826 -29.14136 -25.53455 -24.82832 -24.38928 -21.90954 -21.71720 -20.81285 -19.78368 -19.01321 -16.96201 -16.74321 -16.51767 -16.14453 -15.29480 -14.86226 -14.66678 -14.42289 -14.16080 -13.94777 -13.67174 -13.29242 -13.10247 -12.75737 -12.48178 -12.33922 -12.29295 -12.20041 -11.89946 -11.79187 -11.44675 -11.33479 -11.23774 -10.85272 -10.83257 -10.51418 -10.43898 -10.09330 -10.04273 -9.72032 -9.58042 -9.40313 -8.95476 -8.37348 -7.92371 -5.89821 -3.85899 2.02391 3.36641 3.45557 3.53764 3.65908 3.83376 4.10002 4.15989 4.34225 4.59409 4.63124 4.73941 4.87512 4.94970 5.15554 5.24146 5.30111 5.38560 5.41729 5.44533 5.46728 5.47577 5.55039 5.58085 5.61761 5.63624 5.77037 5.84702 6.02364 6.08934 6.14624 6.20625 6.33807 6.53178 6.67949 6.94412 7.10545 7.35795 7.39094 7.55141 7.56280 7.80395 7.99847 8.69279 9.15704 9.75323 11.23811 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013735 B = 0.006905 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.058296 B = 4054.027874 C = 5034.010136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.079 3.921 3 H 0.080 0.920 4 C -0.092 4.092 5 C -0.006 4.006 6 C -0.517 4.517 7 H 0.067 0.933 8 C 0.066 3.934 9 N -0.910 5.910 10 Si 0.875 3.125 11 H -0.281 1.281 12 H -0.291 1.291 13 H -0.257 1.257 14 N -0.515 5.515 15 C 0.054 3.946 16 C -0.117 4.117 17 C -0.127 4.127 18 C 0.117 3.883 19 C -0.146 4.146 20 C -0.188 4.188 21 C 0.481 3.519 22 O -0.455 6.455 23 O -0.314 6.314 24 C 0.060 3.940 25 H 0.061 0.939 26 H 0.047 0.953 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.033 0.967 31 H 0.004 0.996 32 H 0.260 0.740 33 H 0.075 0.925 34 H 0.029 0.971 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.117 0.883 43 H 0.054 0.946 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.992 -0.982 -17.213 22.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.029 4.029 3 H 0.098 0.902 4 C -0.130 4.130 5 C -0.043 4.043 6 C -0.555 4.555 7 H 0.085 0.915 8 C -0.135 4.135 9 N -0.550 5.550 10 Si 0.702 3.298 11 H -0.207 1.207 12 H -0.217 1.217 13 H -0.181 1.181 14 N -0.239 5.239 15 C -0.074 4.074 16 C -0.155 4.155 17 C -0.165 4.165 18 C 0.079 3.921 19 C -0.184 4.184 20 C -0.226 4.226 21 C 0.321 3.679 22 O -0.338 6.338 23 O -0.230 6.230 24 C -0.068 4.068 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.022 0.978 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.048 0.952 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.123 0.877 42 H 0.135 0.865 43 H 0.072 0.928 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.677 -1.079 -17.183 21.988 hybrid contribution -0.178 0.347 -0.523 0.652 sum -13.856 -0.731 -17.706 22.495 Atomic orbital electron populations 1.22499 0.98507 1.01725 1.01606 1.21947 0.91401 0.98584 0.90980 0.90228 1.21522 0.99385 0.98652 0.93403 1.19467 0.91099 0.96148 0.97621 1.21240 0.92632 1.37968 1.03658 0.91525 1.24996 0.98481 0.94938 0.95042 1.69933 1.14488 1.45948 1.24637 0.86825 0.80571 0.78932 0.83431 1.20669 1.21747 1.18091 1.62000 1.57768 1.01991 1.02117 1.22100 0.97821 0.97163 0.90312 1.21566 1.02073 0.94637 0.97205 1.22011 1.01697 0.97075 0.95700 1.22669 0.78015 0.94999 0.96435 1.22935 0.98146 0.92861 1.04448 1.23094 0.93689 0.99635 1.06230 1.23385 0.88695 0.83349 0.72438 1.90690 1.27763 1.77447 1.37876 1.87339 1.27939 1.34561 1.73194 1.22272 0.95154 0.91687 0.97662 0.91988 0.93394 0.92546 0.92620 0.93061 0.94819 0.97799 0.93018 0.90617 0.95240 0.90125 0.91483 0.91335 0.90209 0.88498 0.89177 0.87748 0.86508 0.92788 0.88663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 8.40 37.16 0.31 -1.88 16 2 C 0.08 1.20 2.31 -67.71 -0.16 1.04 16 3 H 0.08 1.24 7.92 -51.93 -0.41 0.83 16 4 C -0.09 -1.78 4.58 -26.73 -0.12 -1.90 16 5 C -0.01 -0.15 3.87 -27.88 -0.11 -0.25 16 6 C -0.52 -15.25 9.66 -34.44 -0.33 -15.58 16 7 H 0.07 2.09 7.99 -52.48 -0.42 1.67 16 8 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 9 N -0.91 -29.27 13.96 55.43 0.77 -28.49 16 10 Si 0.87 23.39 27.47 -169.99 -4.67 18.72 16 11 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 13 H -0.26 -6.81 6.54 56.52 0.37 -6.44 16 14 N -0.52 -7.65 4.01 -226.87 -0.91 -8.56 16 15 C 0.05 0.65 5.16 -3.85 -0.02 0.63 16 16 C -0.12 -1.32 5.98 -26.62 -0.16 -1.48 16 17 C -0.13 -1.26 4.81 -26.73 -0.13 -1.39 16 18 C 0.12 1.37 0.80 -90.35 -0.07 1.30 16 19 C -0.15 -1.21 6.37 -25.38 -0.16 -1.37 16 20 C -0.19 -1.89 6.99 -26.49 -0.19 -2.07 16 21 C 0.48 7.48 8.58 36.56 0.31 7.79 16 22 O -0.45 -8.63 18.00 -18.28 -0.33 -8.96 16 23 O -0.31 -5.22 10.01 -39.82 -0.40 -5.62 16 24 C 0.06 0.76 3.26 -3.96 -0.01 0.75 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.50 6.93 -51.93 -0.36 0.14 16 27 H 0.06 0.63 6.43 -51.93 -0.33 0.30 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.05 0.98 6.39 -51.93 -0.33 0.65 16 30 H 0.03 0.88 6.89 -51.93 -0.36 0.52 16 31 H 0.00 0.09 7.57 -51.93 -0.39 -0.30 16 32 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 33 H 0.08 0.93 7.98 -51.93 -0.41 0.51 16 34 H 0.03 0.31 6.99 -51.93 -0.36 -0.06 16 35 H 0.08 1.15 7.92 -51.93 -0.41 0.74 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.10 0.66 7.70 -51.93 -0.40 0.26 16 40 H 0.09 0.54 7.70 -51.93 -0.40 0.14 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.05 0.55 6.53 -51.93 -0.34 0.21 16 44 H 0.10 1.37 6.30 -51.93 -0.33 1.04 16 LS Contribution 336.96 15.07 5.08 5.08 Total: -1.00 -35.40 336.96 -8.77 -44.17 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -7.39 Total: -3.84 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -0.93 Total: -12.50 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: -0.14 Total: -37.05 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.73 Total: -14.57 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -4.67 Total: 18.72 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.40 -8.77 -44.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499039.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.488 kcal (2) G-P(sol) polarization free energy of solvation -35.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds