Wall clock time and date at job start Tue Mar 31 2020 05:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46621 * 2 1 4 4 C 1.53005 * 109.47172 * 119.99103 * 2 1 3 5 5 C 1.52997 * 109.47139 * 183.82163 * 4 2 1 6 6 C 1.50702 * 109.47309 * 175.93697 * 5 4 2 7 7 H 1.08003 * 119.99533 * 0.02562 * 6 5 4 8 8 C 1.37869 * 119.99987 * 180.02562 * 6 5 4 9 9 N 1.31524 * 119.99806 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00432 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.47107 * 89.99932 * 10 8 6 12 12 H 1.48502 * 109.47535 * 209.99909 * 10 8 6 13 13 H 1.48501 * 109.46956 * 330.00054 * 10 8 6 14 14 N 1.46897 * 109.47477 * 239.99567 * 2 1 3 15 15 C 1.46817 * 110.98194 * 72.88159 * 14 2 1 16 16 C 1.53035 * 109.60056 * 173.89800 * 15 14 2 17 17 C 1.53187 * 109.22935 * 59.47378 * 16 15 14 18 18 C 1.52806 * 109.15505 * 302.87840 * 17 16 15 19 19 C 1.53976 * 109.72372 * 177.80315 * 18 17 16 20 20 C 1.54604 * 102.98998 * 118.38848 * 19 18 17 21 21 C 1.51815 * 103.53139 * 343.55417 * 20 19 18 22 22 O 1.20830 * 126.41088 * 210.45392 * 21 20 19 23 23 O 1.34606 * 107.18088 * 30.43083 * 21 20 19 24 24 C 1.46909 * 110.99792 * 308.70136 * 14 2 1 25 25 H 1.08997 * 109.47574 * 300.00165 * 1 2 3 26 26 H 1.08994 * 109.47381 * 60.00995 * 1 2 3 27 27 H 1.09004 * 109.46649 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47188 * 303.82582 * 4 2 1 29 29 H 1.08999 * 109.46354 * 63.82616 * 4 2 1 30 30 H 1.08994 * 109.47611 * 295.94141 * 5 4 2 31 31 H 1.09007 * 109.46981 * 55.94286 * 5 4 2 32 32 H 0.97002 * 119.99753 * 179.97438 * 9 8 6 33 33 H 1.09000 * 109.45144 * 53.85764 * 15 14 2 34 34 H 1.09002 * 109.42607 * 293.92482 * 15 14 2 35 35 H 1.09004 * 109.51340 * 299.55121 * 16 15 14 36 36 H 1.08995 * 109.55463 * 179.42201 * 16 15 14 37 37 H 1.09000 * 109.52348 * 182.97287 * 17 16 15 38 38 H 1.09003 * 109.57696 * 62.81516 * 17 16 15 39 39 H 1.09005 * 110.70722 * 236.76208 * 19 18 17 40 40 H 1.09001 * 110.71777 * 0.02562 * 19 18 17 41 41 H 1.09000 * 110.61318 * 225.04293 * 20 19 18 42 42 H 1.09005 * 110.74674 * 102.12529 * 20 19 18 43 43 H 1.08998 * 109.46212 * 65.20677 * 24 14 2 44 44 H 1.08999 * 109.46226 * 305.22686 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5670 -0.6383 1.2984 6 6 4.0630 -1.2608 2.5780 7 1 3.3595 -1.6745 3.2854 8 6 5.4148 -1.3022 2.8457 9 7 5.8478 -1.8459 3.9623 10 14 6.6316 -0.5861 1.6226 11 1 6.8655 0.8461 1.9378 12 1 7.9152 -1.3279 1.7090 13 1 6.0815 -0.7071 0.2485 14 7 2.0197 -0.6926 -1.1993 15 6 1.8146 0.1268 -2.4002 16 6 2.4696 -0.5538 -3.6042 17 6 1.8446 -1.9382 -3.8028 18 6 2.0122 -2.7526 -2.5208 19 6 1.3398 -4.1278 -2.6871 20 6 2.5196 -5.1135 -2.5240 21 6 3.7442 -4.2351 -2.7069 22 8 4.8101 -4.5762 -3.1626 23 8 3.4204 -3.0049 -2.2668 24 6 1.3867 -2.0106 -1.3415 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5136 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6218 -0.2483 2.1379 29 1 1.7337 -1.7666 1.2158 30 1 3.9874 -1.1737 0.4471 31 1 3.8757 0.4064 1.2591 32 1 6.7989 -1.8754 4.1504 33 1 2.2628 1.1091 -2.2503 34 1 0.7461 0.2397 -2.5839 35 1 3.5396 -0.6598 -3.4250 36 1 2.3080 0.0500 -4.4971 37 1 2.3440 -2.4485 -4.6264 38 1 0.7840 -1.8309 -4.0303 39 1 0.5930 -4.2883 -1.9094 40 1 0.8934 -4.2216 -3.6771 41 1 2.4833 -5.8859 -3.2922 42 1 2.5139 -5.5616 -1.5304 43 1 0.3186 -1.8835 -1.5177 44 1 1.5382 -2.5866 -0.4286 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172499039.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:09 Heat of formation + Delta-G solvation = -110.257059 kcal Electronic energy + Delta-G solvation = -23893.465796 eV Core-core repulsion = 20616.443392 eV Total energy + Delta-G solvation = -3277.022404 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.30330 -40.11450 -38.48646 -36.18914 -34.85115 -33.91604 -32.51527 -31.03837 -30.38359 -27.19917 -25.69815 -25.49566 -23.04611 -22.78616 -22.33298 -21.07188 -20.06201 -18.82580 -18.02959 -17.78707 -17.23110 -16.38318 -16.30093 -15.91434 -15.58499 -15.40643 -15.04912 -14.83727 -14.65980 -14.41138 -14.02755 -13.88720 -13.51738 -13.41230 -13.18994 -13.14923 -12.97499 -12.81414 -12.72080 -12.27707 -12.15497 -12.05342 -11.75546 -11.65105 -11.48978 -11.35308 -11.33669 -11.18557 -11.12508 -10.84564 -10.74182 -8.93086 -8.30364 -6.30210 0.90441 1.28004 1.33416 1.48578 2.34814 2.37269 2.89476 3.06928 3.16372 3.38788 3.58488 3.79064 3.90457 4.05373 4.12437 4.20473 4.32542 4.36370 4.44949 4.53008 4.62044 4.69831 4.71900 4.74219 4.76854 4.86300 4.93391 4.95630 4.97522 5.01482 5.02554 5.13333 5.24723 5.28727 5.36953 5.45283 5.60313 5.70157 5.77840 5.95042 6.31266 6.35065 6.39769 6.41975 6.78766 7.34417 8.86476 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013735 B = 0.006905 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.058296 B = 4054.027874 C = 5034.010136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.087 3.913 3 H 0.072 0.928 4 C -0.085 4.085 5 C 0.004 3.996 6 C -0.523 4.523 7 H 0.034 0.966 8 C 0.008 3.992 9 N -0.952 5.952 10 Si 0.940 3.060 11 H -0.263 1.263 12 H -0.288 1.288 13 H -0.259 1.259 14 N -0.551 5.551 15 C 0.057 3.943 16 C -0.117 4.117 17 C -0.122 4.122 18 C 0.104 3.896 19 C -0.133 4.133 20 C -0.177 4.177 21 C 0.470 3.530 22 O -0.509 6.509 23 O -0.358 6.358 24 C 0.060 3.940 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.017 0.983 31 H 0.002 0.998 32 H 0.264 0.736 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.037 0.963 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.124 0.876 41 H 0.130 0.870 42 H 0.121 0.879 43 H 0.090 0.910 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.953 -0.531 -19.672 26.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.021 4.021 3 H 0.090 0.910 4 C -0.123 4.123 5 C -0.033 4.033 6 C -0.561 4.561 7 H 0.053 0.947 8 C -0.188 4.188 9 N -0.594 5.594 10 Si 0.765 3.235 11 H -0.188 1.188 12 H -0.214 1.214 13 H -0.183 1.183 14 N -0.275 5.275 15 C -0.071 4.071 16 C -0.155 4.155 17 C -0.160 4.160 18 C 0.067 3.933 19 C -0.170 4.170 20 C -0.215 4.215 21 C 0.313 3.687 22 O -0.395 6.395 23 O -0.275 6.275 24 C -0.067 4.067 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.035 0.965 31 H 0.020 0.980 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.110 0.890 37 H 0.088 0.912 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.142 0.858 41 H 0.148 0.852 42 H 0.139 0.861 43 H 0.108 0.892 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.679 -0.609 -19.640 25.774 hybrid contribution 0.736 0.215 0.329 0.835 sum -15.942 -0.394 -19.311 25.044 Atomic orbital electron populations 1.22366 0.95224 1.02753 1.02852 1.21693 0.93880 0.97281 0.89285 0.90968 1.21388 0.95495 0.99396 0.96042 1.19313 0.94953 0.94866 0.94174 1.21658 0.92264 1.37367 1.04823 0.94720 1.25850 1.00578 0.95584 0.96782 1.70061 1.15105 1.47662 1.26548 0.85801 0.78060 0.78982 0.80692 1.18837 1.21429 1.18350 1.61875 1.59427 1.03317 1.02881 1.22116 0.99496 0.96250 0.89197 1.21555 0.99546 0.96351 0.98007 1.22059 1.03818 0.95485 0.94598 1.23098 0.76004 0.97220 0.96956 1.23035 0.97294 0.89469 1.07213 1.23124 0.91397 0.99661 1.07273 1.24339 0.89457 0.83993 0.70919 1.90637 1.30236 1.78242 1.40419 1.87288 1.31311 1.35757 1.73174 1.22327 0.97035 0.90321 0.97042 0.91882 0.91013 0.91574 0.93072 0.93243 0.96455 0.98005 0.92760 0.91555 0.92259 0.94388 0.89002 0.91241 0.86342 0.86397 0.85808 0.85189 0.86081 0.89194 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.49 8.40 71.98 0.60 -2.88 16 2 C 0.09 2.50 2.31 44.92 0.10 2.60 16 3 H 0.07 2.16 7.92 -2.39 -0.02 2.15 16 4 C -0.09 -3.32 4.58 30.60 0.14 -3.18 16 5 C 0.00 0.22 3.87 29.85 0.12 0.34 16 6 C -0.52 -31.91 9.66 25.60 0.25 -31.67 16 7 H 0.03 2.27 7.99 -2.91 -0.02 2.25 16 8 C 0.01 0.52 5.47 84.65 0.46 0.98 16 9 N -0.95 -62.95 13.96 21.45 0.30 -62.65 16 10 Si 0.94 49.59 27.47 68.60 1.88 51.48 16 11 H -0.26 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.29 -14.98 7.11 99.48 0.71 -14.28 16 13 H -0.26 -13.67 6.54 99.48 0.65 -13.02 16 14 N -0.55 -15.45 4.01 -871.67 -3.50 -18.95 16 15 C 0.06 1.21 5.16 86.33 0.45 1.66 16 16 C -0.12 -2.41 5.98 30.67 0.18 -2.22 16 17 C -0.12 -1.99 4.81 30.59 0.15 -1.85 16 18 C 0.10 2.19 0.80 -10.62 -0.01 2.18 16 19 C -0.13 -1.65 6.37 31.47 0.20 -1.45 16 20 C -0.18 -3.17 6.99 30.75 0.21 -2.96 16 21 C 0.47 14.77 8.58 71.59 0.61 15.39 16 22 O -0.51 -20.16 18.00 21.50 0.39 -19.78 16 23 O -0.36 -12.05 10.01 -55.55 -0.56 -12.61 16 24 C 0.06 1.37 3.26 86.21 0.28 1.65 16 25 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.07 1.14 6.93 -2.39 -0.02 1.12 16 27 H 0.07 1.21 6.43 -2.38 -0.02 1.20 16 28 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.05 1.91 6.39 -2.39 -0.02 1.90 16 30 H 0.02 0.92 6.89 -2.39 -0.02 0.91 16 31 H 0.00 0.08 7.57 -2.38 -0.02 0.06 16 32 H 0.26 16.36 8.31 -92.71 -0.77 15.59 16 33 H 0.07 1.51 7.98 -2.39 -0.02 1.49 16 34 H 0.06 0.93 6.99 -2.39 -0.02 0.91 16 35 H 0.04 1.10 7.92 -2.38 -0.02 1.08 16 36 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.12 1.03 7.70 -2.38 -0.02 1.01 16 40 H 0.12 0.76 7.70 -2.39 -0.02 0.74 16 41 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.12 2.10 8.14 -2.38 -0.02 2.08 16 43 H 0.09 1.38 6.53 -2.39 -0.02 1.36 16 44 H 0.07 1.92 6.30 -2.39 -0.02 1.91 16 Total: -1.00 -82.59 336.96 3.18 -79.41 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: 0.91 Total: 4.49 kcal Atomic # 6 Polarization: -25.14 SS G_CDS: 3.75 Total: -21.39 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -3.20 Total: -81.60 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -0.17 Total: -32.39 kcal Atomic # 14 Polarization: 49.59 SS G_CDS: 1.88 Total: 51.48 kcal Total: -82.59 3.18 -79.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499039.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.844 kcal (2) G-P(sol) polarization free energy of solvation -82.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds