Wall clock time and date at job start Tue Mar 31 2020 05:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47219 * 2 1 4 4 C 1.52995 * 109.47021 * 239.99864 * 2 1 3 5 5 C 1.53002 * 109.46769 * 175.00306 * 4 2 1 6 6 C 1.50703 * 109.46921 * 180.02562 * 5 4 2 7 7 H 1.07997 * 120.00317 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00209 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99473 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00195 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47365 * 60.00062 * 10 8 6 12 12 H 1.48501 * 109.47158 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47273 * 299.99916 * 10 8 6 14 14 N 1.46905 * 109.46986 * 119.99673 * 2 1 3 15 15 C 1.46837 * 110.99981 * 59.17680 * 14 2 1 16 16 C 1.53033 * 109.60947 * 173.90289 * 15 14 2 17 17 C 1.53190 * 109.22815 * 59.47421 * 16 15 14 18 18 C 1.52803 * 109.15413 * 302.87720 * 17 16 15 19 19 C 1.53974 * 109.72568 * 177.79983 * 18 17 16 20 20 C 1.54610 * 102.98736 * 118.39223 * 19 18 17 21 21 C 1.51813 * 103.53303 * 343.55319 * 20 19 18 22 22 O 1.20819 * 126.41312 * 210.45311 * 21 20 19 23 23 O 1.34617 * 107.17475 * 30.43406 * 21 20 19 24 24 C 1.46907 * 110.99838 * 295.00154 * 14 2 1 25 25 H 1.08997 * 109.46896 * 300.00452 * 1 2 3 26 26 H 1.08996 * 109.46922 * 60.00249 * 1 2 3 27 27 H 1.08997 * 109.47219 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47359 * 294.99906 * 4 2 1 29 29 H 1.08994 * 109.47482 * 55.00047 * 4 2 1 30 30 H 1.08998 * 109.47176 * 299.99580 * 5 4 2 31 31 H 1.08994 * 109.47558 * 60.00150 * 5 4 2 32 32 H 0.97006 * 119.99643 * 180.02562 * 9 8 6 33 33 H 1.09003 * 109.44655 * 53.86297 * 15 14 2 34 34 H 1.08999 * 109.42559 * 293.93189 * 15 14 2 35 35 H 1.09005 * 109.51403 * 299.55453 * 16 15 14 36 36 H 1.08997 * 109.55695 * 179.42827 * 16 15 14 37 37 H 1.09001 * 109.51964 * 182.97968 * 17 16 15 38 38 H 1.08993 * 109.57403 * 62.81455 * 17 16 15 39 39 H 1.09001 * 110.71615 * 236.76518 * 19 18 17 40 40 H 1.09001 * 110.71045 * 0.02562 * 19 18 17 41 41 H 1.09003 * 110.60968 * 225.04762 * 20 19 18 42 42 H 1.08994 * 110.74421 * 102.13447 * 20 19 18 43 43 H 1.08996 * 109.46319 * 65.20664 * 24 14 2 44 44 H 1.09000 * 109.46187 * 305.24200 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3135 6 6 4.0672 -1.3232 -2.5443 7 1 3.3688 -1.8037 -3.2135 8 6 5.4184 -1.3594 -2.8162 9 7 6.2689 -0.7738 -2.0016 10 14 6.0411 -2.2399 -4.3414 11 1 5.4485 -1.6143 -5.5508 12 1 7.5211 -2.1351 -4.4040 13 1 5.6488 -3.6709 -4.2816 14 7 2.0197 -0.6925 1.1995 15 6 1.5329 -2.0771 1.2434 16 6 2.1807 -2.8123 2.4188 17 6 1.8247 -2.0914 3.7228 18 6 2.2825 -0.6363 3.6323 19 6 1.8817 0.1152 4.9151 20 6 3.2437 0.5544 5.5003 21 6 4.2446 -0.3179 4.7642 22 8 5.3035 -0.7122 5.1921 23 8 3.7313 -0.5703 3.5456 24 6 1.6487 0.0393 2.4181 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.7517 -1.7716 -1.2055 29 1 1.6054 -0.2618 -2.1369 30 1 3.8532 0.4369 -1.3573 31 1 3.9995 -1.0728 -0.4259 32 1 7.2195 -0.7989 -2.1931 33 1 1.7911 -2.5822 0.3126 34 1 0.4500 -2.0768 1.3679 35 1 3.2633 -2.8203 2.2912 36 1 1.8111 -3.8370 2.4567 37 1 2.3268 -2.5800 4.5578 38 1 0.7461 -2.1252 3.8760 39 1 1.2665 0.9830 4.6773 40 1 1.3622 -0.5497 5.6051 41 1 3.2812 0.3605 6.5723 42 1 3.4300 1.6087 5.2956 43 1 0.5641 0.0378 2.5266 44 1 2.0049 1.0670 2.3473 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172499040.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:11 Heat of formation + Delta-G solvation = -110.712646 kcal Electronic energy + Delta-G solvation = -23536.843672 eV Core-core repulsion = 20259.801513 eV Total energy + Delta-G solvation = -3277.042159 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.28484 -40.12419 -38.52559 -36.07213 -34.86540 -33.79867 -32.48328 -30.88887 -30.20569 -27.09580 -25.89370 -25.13308 -23.25575 -22.92937 -22.68134 -20.92645 -19.86038 -18.38774 -17.96172 -17.56019 -17.35674 -16.75387 -16.52433 -15.67887 -15.52892 -15.36403 -15.08129 -14.60310 -14.45979 -14.42931 -14.01697 -13.79396 -13.47542 -13.25260 -13.14375 -13.08401 -12.86719 -12.77451 -12.65346 -12.37426 -12.30733 -12.12265 -11.89320 -11.65731 -11.55070 -11.36061 -11.20931 -11.06663 -10.96683 -10.85152 -10.49703 -8.87621 -8.14250 -6.26005 0.91589 1.37037 1.41166 1.48903 2.40431 2.42150 2.90732 3.17529 3.18893 3.40654 3.58758 3.80318 3.93022 4.08747 4.10874 4.21750 4.33810 4.40213 4.47049 4.51656 4.61106 4.68899 4.74833 4.76644 4.79004 4.86183 4.89935 4.97413 5.02295 5.04628 5.09697 5.15870 5.27829 5.34698 5.40200 5.50164 5.58674 5.88132 5.98529 6.02761 6.31738 6.38565 6.42755 6.45202 6.95429 7.42630 8.96783 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017450 B = 0.005033 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.185235 B = 5562.393406 C = 6459.305039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.088 3.912 3 H 0.063 0.937 4 C -0.093 4.093 5 C 0.042 3.958 6 C -0.543 4.543 7 H 0.057 0.943 8 C -0.003 4.003 9 N -0.935 5.935 10 Si 0.962 3.038 11 H -0.264 1.264 12 H -0.286 1.286 13 H -0.267 1.267 14 N -0.549 5.549 15 C 0.056 3.944 16 C -0.118 4.118 17 C -0.122 4.122 18 C 0.105 3.895 19 C -0.130 4.130 20 C -0.172 4.172 21 C 0.467 3.533 22 O -0.510 6.510 23 O -0.361 6.361 24 C 0.062 3.938 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.052 0.948 30 H -0.026 1.026 31 H -0.004 1.004 32 H 0.260 0.740 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.030 0.970 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.120 0.880 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.090 0.910 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.486 2.148 16.197 24.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.020 4.020 3 H 0.082 0.918 4 C -0.131 4.131 5 C 0.004 3.996 6 C -0.581 4.581 7 H 0.076 0.924 8 C -0.201 4.201 9 N -0.576 5.576 10 Si 0.786 3.214 11 H -0.188 1.188 12 H -0.211 1.211 13 H -0.192 1.192 14 N -0.273 5.273 15 C -0.071 4.071 16 C -0.156 4.156 17 C -0.159 4.159 18 C 0.068 3.932 19 C -0.167 4.167 20 C -0.210 4.210 21 C 0.311 3.689 22 O -0.397 6.397 23 O -0.279 6.279 24 C -0.065 4.065 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.070 0.930 30 H -0.008 1.008 31 H 0.014 0.986 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.049 0.951 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.138 0.862 39 H 0.143 0.857 40 H 0.138 0.862 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.108 0.892 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.208 1.943 16.180 23.700 hybrid contribution 0.677 -0.365 -1.050 1.301 sum -16.531 1.579 15.130 22.465 Atomic orbital electron populations 1.22364 0.95140 1.02562 1.02999 1.21640 0.93740 0.97077 0.89514 0.91845 1.21571 0.96333 0.99277 0.95916 1.18776 0.92361 0.93690 0.94728 1.21790 0.92471 1.34438 1.09367 0.92439 1.26007 0.97469 0.96529 1.00055 1.70155 1.02537 1.45720 1.39139 0.85556 0.76939 0.79267 0.79605 1.18844 1.21114 1.19232 1.61848 1.61250 1.02388 1.01841 1.22084 0.97530 0.88912 0.98575 1.21539 0.99909 0.99518 0.94596 1.22057 1.03558 0.92693 0.97571 1.23065 0.74891 0.97631 0.97593 1.23032 0.96554 1.02912 0.94251 1.23116 0.93173 1.01581 1.03101 1.24451 0.86164 0.77409 0.80900 1.90641 1.26192 1.53792 1.69075 1.87324 1.24983 1.84447 1.31146 1.22321 0.99054 0.97462 0.87680 0.90635 0.91792 0.91982 0.92977 0.92976 1.00764 0.98558 0.93168 0.92645 0.92105 0.95123 0.89652 0.91326 0.86192 0.85682 0.86158 0.85336 0.85250 0.89211 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.83 8.50 71.98 0.61 -3.22 16 2 C 0.09 2.87 2.35 44.91 0.11 2.97 16 3 H 0.06 2.21 8.09 -2.39 -0.02 2.19 16 4 C -0.09 -3.91 4.44 30.59 0.14 -3.77 16 5 C 0.04 2.34 4.86 29.85 0.15 2.49 16 6 C -0.54 -32.72 9.11 25.60 0.23 -32.49 16 7 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 8 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 9 N -0.93 -61.51 13.29 21.45 0.28 -61.22 16 10 Si 0.96 46.86 29.54 68.60 2.03 48.89 16 11 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 13 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 14 N -0.55 -17.51 4.05 -871.61 -3.53 -21.05 16 15 C 0.06 1.61 4.63 86.33 0.40 2.01 16 16 C -0.12 -3.19 5.98 30.67 0.18 -3.00 16 17 C -0.12 -2.32 4.81 30.59 0.15 -2.18 16 18 C 0.10 2.23 0.80 -10.62 -0.01 2.22 16 19 C -0.13 -1.38 6.37 31.47 0.20 -1.18 16 20 C -0.17 -2.61 6.99 30.75 0.21 -2.39 16 21 C 0.47 14.17 8.58 71.59 0.61 14.78 16 22 O -0.51 -20.01 18.00 21.54 0.39 -19.62 16 23 O -0.36 -12.23 10.01 -55.66 -0.56 -12.79 16 24 C 0.06 1.39 3.82 86.21 0.33 1.72 16 25 H 0.07 1.27 6.64 -2.39 -0.02 1.26 16 26 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 1.32 6.53 -2.39 -0.02 1.30 16 28 H 0.05 2.14 6.05 -2.39 -0.01 2.13 16 29 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 30 H -0.03 -1.62 8.14 -2.39 -0.02 -1.64 16 31 H 0.00 -0.26 7.75 -2.39 -0.02 -0.27 16 32 H 0.26 16.15 8.31 -92.70 -0.77 15.38 16 33 H 0.06 1.93 5.92 -2.39 -0.01 1.92 16 34 H 0.06 1.32 6.63 -2.39 -0.02 1.30 16 35 H 0.03 1.13 7.92 -2.38 -0.02 1.11 16 36 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.12 0.67 7.70 -2.39 -0.02 0.65 16 40 H 0.12 0.64 7.70 -2.39 -0.02 0.62 16 41 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.09 1.31 6.70 -2.39 -0.02 1.30 16 44 H 0.08 1.79 8.09 -2.39 -0.02 1.77 16 Total: -1.00 -83.95 339.77 3.35 -80.60 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: 0.97 Total: 6.98 kcal Atomic # 6 Polarization: -25.56 SS G_CDS: 3.77 Total: -21.79 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -3.25 Total: -82.27 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -0.17 Total: -32.42 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -83.95 3.35 -80.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499040.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.110 kcal (2) G-P(sol) polarization free energy of solvation -83.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds