Wall clock time and date at job start Tue Mar 31 2020 05:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47389 * 2 1 4 4 C 1.52996 * 109.47218 * 239.99910 * 2 1 3 5 5 C 1.53000 * 109.46944 * 64.31295 * 4 2 1 6 6 C 1.50705 * 109.47365 * 174.79933 * 5 4 2 7 7 H 1.08003 * 119.99633 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00253 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00244 * 359.72620 * 8 6 5 10 10 Si 1.86798 * 120.00095 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47360 * 179.72431 * 10 8 6 12 12 H 1.48500 * 109.47306 * 299.72718 * 10 8 6 13 13 H 1.48505 * 109.46820 * 59.72622 * 10 8 6 14 14 N 1.46907 * 109.47087 * 120.00356 * 2 1 3 15 15 C 1.46847 * 110.99896 * 181.42092 * 14 2 1 16 16 C 1.53038 * 109.60463 * 186.09293 * 15 14 2 17 17 C 1.53177 * 109.23650 * 300.53179 * 16 15 14 18 18 C 1.52801 * 109.15952 * 57.11084 * 17 16 15 19 19 C 1.53984 * 109.73739 * 182.21496 * 18 17 16 20 20 C 1.54597 * 102.98672 * 239.62391 * 19 18 17 21 21 C 1.51815 * 103.53629 * 343.55324 * 20 19 18 22 22 O 1.20824 * 126.40761 * 210.41506 * 21 20 19 23 23 O 1.34603 * 107.17731 * 30.43026 * 21 20 19 24 24 C 1.46908 * 110.99633 * 305.58538 * 14 2 1 25 25 H 1.08997 * 109.46723 * 59.99974 * 1 2 3 26 26 H 1.08997 * 109.47389 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46616 * 299.99706 * 1 2 3 28 28 H 1.09005 * 109.47433 * 304.31774 * 4 2 1 29 29 H 1.08995 * 109.47516 * 184.31506 * 4 2 1 30 30 H 1.09000 * 109.46946 * 54.80401 * 5 4 2 31 31 H 1.08997 * 109.47556 * 294.80131 * 5 4 2 32 32 H 0.97010 * 119.99949 * 0.27307 * 9 8 6 33 33 H 1.09001 * 109.44680 * 306.13434 * 15 14 2 34 34 H 1.08996 * 109.44716 * 66.08201 * 15 14 2 35 35 H 1.08994 * 109.50715 * 60.46003 * 16 15 14 36 36 H 1.08997 * 109.50751 * 180.60261 * 16 15 14 37 37 H 1.09001 * 109.52352 * 177.01224 * 17 16 15 38 38 H 1.09003 * 109.52546 * 297.13780 * 17 16 15 39 39 H 1.09006 * 110.70971 * 357.99901 * 19 18 17 40 40 H 1.09005 * 110.71087 * 121.24716 * 19 18 17 41 41 H 1.09001 * 110.61181 * 225.03741 * 20 19 18 42 42 H 1.09004 * 110.61315 * 102.06843 * 20 19 18 43 43 H 1.08999 * 109.46337 * 294.78495 * 24 14 2 44 44 H 1.08999 * 109.46212 * 54.75292 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6205 0.0599 -2.4961 6 6 2.2296 -0.5788 -3.7176 7 1 2.8539 -1.4541 -3.6148 8 6 1.9908 -0.0451 -4.9662 9 7 1.2271 1.0181 -5.0919 10 14 2.7464 -0.8364 -6.4803 11 1 2.3343 -0.0819 -7.6911 12 1 4.2267 -0.8148 -6.3636 13 1 2.2790 -2.2417 -6.5898 14 7 2.0197 -0.6926 1.1995 15 6 3.4873 -0.6828 1.2505 16 6 3.9659 -1.5388 2.4253 17 6 3.3937 -0.9725 3.7285 18 6 1.8694 -0.9314 3.6307 19 6 1.2826 -0.3124 4.9128 20 6 0.3806 -1.4413 5.4623 21 6 0.2144 -2.3729 4.2752 22 8 -0.7449 -3.0682 4.0381 23 8 1.3357 -2.2796 3.5365 24 6 1.4427 -0.1079 2.4174 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.6149 -1.7242 -1.2888 29 1 3.1272 -0.7887 -1.2114 30 1 1.9676 1.0899 -2.4134 31 1 0.5341 0.0485 -2.5836 32 1 0.8350 1.4293 -4.3056 33 1 3.8854 -1.0880 0.3202 34 1 3.8390 0.3406 1.3806 35 1 3.6221 -2.5645 2.2921 36 1 5.0549 -1.5218 2.4681 37 1 3.6881 -1.6094 4.5627 38 1 3.7769 0.0356 3.8869 39 1 2.0746 -0.0719 5.6221 40 1 0.6920 0.5732 4.6779 41 1 -0.5845 -1.0431 5.7757 42 1 0.8708 -1.9563 6.2885 43 1 1.7967 0.9167 2.5312 44 1 0.3554 -0.1099 2.3413 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172499043.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:14 Heat of formation + Delta-G solvation = -94.814815 kcal Electronic energy + Delta-G solvation = -23166.281331 eV Core-core repulsion = 19889.928554 eV Total energy + Delta-G solvation = -3276.352778 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.48298 -38.98031 -37.42396 -35.10921 -33.46509 -33.03428 -31.09441 -30.20074 -28.34556 -25.59389 -24.72732 -23.90375 -22.11590 -21.68752 -21.66616 -19.76566 -19.28675 -17.14781 -16.92526 -16.62296 -16.31468 -15.46515 -15.15923 -14.91007 -14.07663 -13.93989 -13.86165 -13.75653 -13.68010 -13.29920 -12.91620 -12.83951 -12.48578 -12.26873 -12.16300 -11.75129 -11.70162 -11.39899 -11.28834 -11.19957 -10.92617 -10.80008 -10.64373 -10.31582 -10.22807 -10.13739 -10.06308 -9.68487 -9.59536 -8.48167 -8.27695 -8.09247 -6.31846 -4.00056 1.77256 3.16376 3.46687 3.49111 3.63849 3.67535 3.89432 4.06192 4.17833 4.40040 4.58360 4.61609 4.70858 4.90502 5.06890 5.18337 5.21358 5.31742 5.32524 5.41215 5.44127 5.44757 5.47276 5.52799 5.59390 5.73097 5.82112 5.84221 6.05645 6.19388 6.26189 6.31865 6.54275 6.60577 6.67005 6.71718 7.01484 7.29031 7.32040 7.34484 7.48331 7.61630 8.28250 8.51616 8.93716 9.71826 11.08799 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028584 B = 0.003659 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.332045 B = 7650.785829 C = 7946.741257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.082 3.918 3 H 0.035 0.965 4 C -0.094 4.094 5 C 0.010 3.990 6 C -0.599 4.599 7 H 0.048 0.952 8 C 0.014 3.986 9 N -0.915 5.915 10 Si 1.068 2.932 11 H -0.283 1.283 12 H -0.288 1.288 13 H -0.288 1.288 14 N -0.525 5.525 15 C 0.049 3.951 16 C -0.116 4.116 17 C -0.112 4.112 18 C 0.119 3.881 19 C -0.147 4.147 20 C -0.188 4.188 21 C 0.482 3.518 22 O -0.449 6.449 23 O -0.323 6.323 24 C 0.042 3.958 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.042 0.958 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.003 0.997 31 H 0.010 0.990 32 H 0.268 0.732 33 H 0.089 0.911 34 H 0.030 0.970 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.113 0.887 43 H 0.051 0.949 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.205 -0.450 23.925 24.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.025 4.025 3 H 0.053 0.947 4 C -0.132 4.132 5 C -0.027 4.027 6 C -0.638 4.638 7 H 0.066 0.934 8 C -0.190 4.190 9 N -0.552 5.552 10 Si 0.896 3.104 11 H -0.208 1.208 12 H -0.215 1.215 13 H -0.214 1.214 14 N -0.250 5.250 15 C -0.079 4.079 16 C -0.154 4.154 17 C -0.150 4.150 18 C 0.081 3.919 19 C -0.185 4.185 20 C -0.226 4.226 21 C 0.321 3.679 22 O -0.331 6.331 23 O -0.240 6.240 24 C -0.086 4.086 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.021 0.979 31 H 0.029 0.971 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.048 0.952 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.125 0.875 42 H 0.131 0.869 43 H 0.068 0.932 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.799 -1.308 21.981 22.197 hybrid contribution 0.127 0.823 1.896 2.071 sum 2.926 -0.485 23.877 24.061 Atomic orbital electron populations 1.21936 0.94777 1.02444 1.01073 1.21806 0.95406 0.95317 0.89956 0.94729 1.21596 0.99602 0.99466 0.92555 1.19250 0.96199 0.94875 0.92413 1.22071 1.33657 1.15113 0.92930 0.93390 1.25836 0.95956 0.95889 1.01288 1.70789 1.30534 1.20248 1.33585 0.83561 0.75742 0.75478 0.75590 1.20821 1.21508 1.21426 1.61961 1.06904 1.55032 1.01071 1.22198 0.87837 0.98090 0.99774 1.21585 0.99672 1.01113 0.93044 1.21755 0.91311 1.02313 0.99583 1.22669 0.95247 0.79121 0.94853 1.22960 1.00280 0.98582 0.96697 1.23089 1.03198 0.97416 0.98916 1.23347 0.80476 0.80571 0.83486 1.90712 1.27590 1.40610 1.74205 1.87210 1.37579 1.31403 1.67849 1.22550 1.01139 0.95156 0.89775 0.91283 0.91937 0.93895 0.92406 0.92986 0.97912 0.97148 0.92210 0.89320 0.95217 0.90232 0.91200 0.90698 0.90042 0.88474 0.88992 0.87530 0.86915 0.93151 0.89712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.53 37.16 0.32 -2.12 16 2 C 0.08 1.44 2.16 -67.71 -0.15 1.29 16 3 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 4 C -0.09 -2.01 4.57 -26.73 -0.12 -2.13 16 5 C 0.01 0.26 3.89 -27.88 -0.11 0.15 16 6 C -0.60 -17.46 9.11 -34.44 -0.31 -17.77 16 7 H 0.05 1.38 7.74 -52.48 -0.41 0.97 16 8 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 9 N -0.91 -28.47 13.65 55.43 0.76 -27.71 16 10 Si 1.07 25.80 29.90 -169.99 -5.08 20.72 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 13 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 14 N -0.53 -7.91 4.48 -226.83 -1.02 -8.92 16 15 C 0.05 0.65 5.24 -3.83 -0.02 0.63 16 16 C -0.12 -1.25 5.98 -26.62 -0.16 -1.41 16 17 C -0.11 -0.95 4.81 -26.74 -0.13 -1.08 16 18 C 0.12 1.17 0.80 -90.35 -0.07 1.10 16 19 C -0.15 -0.93 6.37 -25.38 -0.16 -1.09 16 20 C -0.19 -1.34 6.99 -26.49 -0.19 -1.53 16 21 C 0.48 6.05 8.58 36.56 0.31 6.37 16 22 O -0.45 -7.37 18.00 -18.28 -0.33 -7.70 16 23 O -0.32 -4.28 10.01 -39.81 -0.40 -4.68 16 24 C 0.04 0.51 3.86 -3.96 -0.02 0.49 16 25 H 0.07 1.25 6.66 -51.93 -0.35 0.90 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 27 H 0.04 0.61 6.22 -51.93 -0.32 0.28 16 28 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.05 1.10 6.10 -51.93 -0.32 0.78 16 30 H 0.00 0.07 8.01 -51.93 -0.42 -0.34 16 31 H 0.01 0.28 6.67 -51.93 -0.35 -0.07 16 32 H 0.27 8.27 7.22 -40.82 -0.29 7.98 16 33 H 0.09 1.34 5.95 -51.93 -0.31 1.03 16 34 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 1.00 7.92 -51.93 -0.41 0.59 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.40 7.70 -51.93 -0.40 0.00 16 40 H 0.09 0.50 7.70 -51.93 -0.40 0.10 16 41 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.08 1.07 5.91 -51.93 -0.31 0.76 16 LS Contribution 338.90 15.07 5.11 5.11 Total: -1.00 -34.08 338.90 -9.16 -43.24 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -7.30 Total: -3.27 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -0.90 Total: -16.79 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: -0.26 Total: -36.64 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: -0.73 Total: -12.37 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.08 Total: 20.72 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.08 -9.16 -43.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499043.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.572 kcal (2) G-P(sol) polarization free energy of solvation -34.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds