Wall clock time and date at job start Tue Mar 31 2020 06:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45198 * 109.46907 * 2 1 4 4 C 1.34222 * 117.00073 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99973 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99993 * 180.27879 * 4 3 2 7 7 H 1.08997 * 115.52107 * 34.14372 * 6 4 3 8 8 C 1.53001 * 117.44525 * 179.56271 * 6 4 3 9 9 H 1.09008 * 119.52415 * 355.90938 * 8 6 4 10 10 C 1.54377 * 118.13347 * 200.86837 * 8 6 4 11 11 N 1.52010 * 102.91869 * 271.94058 * 10 8 6 12 12 C 1.46903 * 110.70875 * 159.11252 * 11 10 8 13 13 H 1.09002 * 109.47374 * 191.91971 * 12 11 10 14 14 C 1.53000 * 109.47102 * 311.91365 * 12 11 10 15 15 C 1.52998 * 109.47269 * 71.91944 * 12 11 10 16 16 C 1.53003 * 109.47228 * 64.99764 * 15 12 11 17 17 C 1.50700 * 109.46868 * 180.02562 * 16 15 12 18 18 H 1.07998 * 120.00180 * 359.97438 * 17 16 15 19 19 C 1.37884 * 119.99835 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99936 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 119.99801 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47491 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47081 * 120.00005 * 21 19 17 24 24 H 1.48501 * 109.47186 * 239.99725 * 21 19 17 25 25 C 1.48557 * 104.44592 * 39.57488 * 11 10 8 26 26 C 1.53009 * 117.44304 * 248.71987 * 6 4 3 27 27 H 1.08997 * 119.52234 * 4.09140 * 26 6 4 28 28 H 1.09002 * 109.47302 * 299.99524 * 1 2 3 29 29 H 1.08997 * 109.47295 * 60.00167 * 1 2 3 30 30 H 1.09004 * 109.46772 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47302 * 240.00476 * 2 1 3 32 32 H 1.08997 * 109.47295 * 119.99833 * 2 1 3 33 33 H 1.09001 * 110.40892 * 31.54360 * 10 8 6 34 34 H 1.08997 * 110.41530 * 153.99261 * 10 8 6 35 35 H 1.08988 * 109.47329 * 307.64476 * 14 12 11 36 36 H 1.09007 * 109.46660 * 67.64425 * 14 12 11 37 37 H 1.08998 * 109.46857 * 187.63598 * 14 12 11 38 38 H 1.08998 * 109.47385 * 185.00094 * 15 12 11 39 39 H 1.08999 * 109.47067 * 304.99827 * 15 12 11 40 40 H 1.08995 * 109.46886 * 300.00036 * 16 15 12 41 41 H 1.09000 * 109.46590 * 60.00885 * 16 15 12 42 42 H 0.96992 * 120.00091 * 180.02562 * 20 19 17 43 43 H 1.08996 * 110.41567 * 201.52332 * 25 11 10 44 44 H 1.09004 * 110.41173 * 79.07398 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9206 2.9375 0.0058 7 1 3.3483 3.6798 0.5622 8 6 5.4448 3.0702 0.0152 9 1 6.0616 2.1741 0.0847 10 6 6.0567 4.3996 0.5066 11 7 6.1079 5.2388 -0.7599 12 6 6.1886 6.6686 -0.4327 13 1 6.0120 7.2578 -1.3326 14 6 5.1303 7.0120 0.6175 15 6 7.5789 6.9875 0.1209 16 6 8.6266 6.7623 -0.9711 17 6 9.9960 7.0757 -0.4255 18 1 10.1078 7.4032 0.5975 19 6 11.1062 6.9454 -1.2329 20 7 10.9700 6.5471 -2.4788 21 14 12.8034 7.3347 -0.5568 22 1 12.6860 7.7596 0.8612 23 1 13.6597 6.1243 -0.6421 24 1 13.4139 8.4300 -1.3524 25 6 4.8381 4.9247 -1.4642 26 6 4.6441 3.4071 -1.2580 27 1 4.6648 2.7618 -2.1362 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 5.4219 4.8515 1.2687 34 1 7.0613 4.2348 0.8960 35 1 4.1555 6.6610 0.2792 36 1 5.3838 6.5277 1.5605 37 1 5.0979 8.0921 0.7610 38 1 7.6108 8.0273 0.4462 39 1 7.7910 6.3351 0.9680 40 1 8.5948 5.7225 -1.2963 41 1 8.4146 7.4147 -1.8181 42 1 11.7510 6.4551 -3.0466 43 1 4.9249 5.1560 -2.5258 44 1 4.0103 5.4775 -1.0201 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172499381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:41 Heat of formation + Delta-G solvation = -56.567473 kcal Electronic energy + Delta-G solvation = -22097.024230 eV Core-core repulsion = 18822.329982 eV Total energy + Delta-G solvation = -3274.694248 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.01236 -39.63195 -36.98492 -35.83810 -33.08156 -32.08787 -31.00379 -29.01279 -28.39737 -26.09953 -25.08450 -23.53460 -22.35420 -21.03365 -20.32501 -20.30740 -18.89868 -18.09119 -16.92808 -16.75597 -16.12526 -15.71287 -14.87962 -14.50004 -14.37202 -14.01630 -13.75739 -13.55550 -13.27856 -13.07974 -12.68627 -12.61168 -12.28862 -11.99091 -11.91511 -11.85566 -11.73580 -11.37006 -11.21926 -11.07734 -10.85321 -10.83920 -10.60209 -10.42143 -10.28542 -10.15881 -10.12146 -9.60538 -9.21101 -8.87773 -8.23677 -7.96916 -5.87496 -3.88824 1.87031 2.30982 3.37142 3.44532 3.48217 3.48654 4.11743 4.34020 4.51157 4.55171 4.57117 4.61863 4.68405 4.84016 4.91189 5.03128 5.18959 5.29609 5.33563 5.40266 5.42740 5.48024 5.50217 5.59300 5.61033 5.63029 5.82028 5.99726 6.03473 6.10086 6.17752 6.23886 6.27562 6.38002 6.63071 6.77341 7.13216 7.27319 7.43855 7.55946 7.85841 8.07553 8.23184 8.57794 9.20399 9.73917 11.23561 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030431 B = 0.003033 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.893903 B = 9229.975769 C = 9680.718719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.355 6.355 4 C 0.497 3.503 5 O -0.504 6.504 6 C -0.149 4.149 7 H 0.130 0.870 8 C -0.120 4.120 9 H 0.130 0.870 10 C 0.052 3.948 11 N -0.482 5.482 12 C 0.067 3.933 13 H 0.080 0.920 14 C -0.187 4.187 15 C -0.098 4.098 16 C 0.028 3.972 17 C -0.518 4.518 18 H 0.051 0.949 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.886 3.114 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.286 1.286 25 C 0.056 3.944 26 C -0.125 4.125 27 H 0.123 0.877 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.049 0.951 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.049 0.951 39 H 0.047 0.953 40 H 0.032 0.968 41 H 0.009 0.991 42 H 0.257 0.743 43 H 0.091 0.909 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.665 -8.815 5.069 23.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.272 6.272 4 C 0.340 3.660 5 O -0.392 6.392 6 C -0.168 4.168 7 H 0.147 0.853 8 C -0.139 4.139 9 H 0.147 0.853 10 C -0.075 4.075 11 N -0.206 5.206 12 C -0.041 4.041 13 H 0.098 0.902 14 C -0.246 4.246 15 C -0.136 4.136 16 C -0.009 4.009 17 C -0.557 4.557 18 H 0.069 0.931 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.715 3.285 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.212 1.212 25 C -0.072 4.072 26 C -0.144 4.144 27 H 0.141 0.859 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.051 0.949 41 H 0.027 0.973 42 H 0.067 0.933 43 H 0.110 0.890 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -20.872 -9.263 4.567 23.287 hybrid contribution 0.229 0.179 0.786 0.838 sum -20.643 -9.084 5.353 23.180 Atomic orbital electron populations 1.21809 0.92524 1.02997 1.03610 1.23050 0.95416 0.80134 1.02702 1.86490 1.24327 1.32399 1.84000 1.22510 0.80423 0.90983 0.72069 1.90676 1.60514 1.42764 1.45197 1.21936 0.96461 0.92742 1.05699 0.85269 1.23521 0.88993 1.00934 1.00450 0.85252 1.23428 1.01618 0.89811 0.92595 1.66863 1.31168 1.05943 1.16599 1.22029 0.96636 0.87987 0.97487 0.90205 1.22550 0.99258 1.02140 1.00653 1.21651 0.92512 0.99300 1.00168 1.19015 0.91202 0.98125 0.92550 1.21367 0.92266 1.44425 0.97606 0.93066 1.25002 0.98913 0.95615 0.94928 1.69986 1.29452 1.47641 1.06256 0.86631 0.84982 0.77886 0.79033 1.19898 1.21126 1.21189 1.22729 0.92261 0.91206 1.01021 1.23415 1.01433 0.97902 0.91648 0.85876 0.91440 0.91386 0.90187 0.91149 0.91179 0.92180 0.88372 0.93217 0.92249 0.92132 0.93280 0.93402 0.94917 0.97287 0.93279 0.89024 0.93220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.29 37.16 0.38 -0.48 16 2 C 0.06 0.51 6.19 37.16 0.23 0.74 16 3 O -0.36 -3.90 10.22 -39.24 -0.40 -4.30 16 4 C 0.50 6.23 7.74 36.01 0.28 6.51 16 5 O -0.50 -7.63 16.08 -18.75 -0.30 -7.93 16 6 C -0.15 -1.71 5.84 -91.77 -0.54 -2.25 16 7 H 0.13 1.28 8.14 -51.93 -0.42 0.86 16 8 C -0.12 -1.59 6.47 -89.31 -0.58 -2.17 16 9 H 0.13 1.83 7.80 -51.92 -0.40 1.43 16 10 C 0.05 0.74 5.46 -0.19 0.00 0.74 16 11 N -0.48 -7.74 4.85 -218.90 -1.06 -8.80 16 12 C 0.07 1.10 2.34 -67.71 -0.16 0.94 16 13 H 0.08 1.35 8.11 -51.93 -0.42 0.93 16 14 C -0.19 -2.42 8.20 37.16 0.30 -2.12 16 15 C -0.10 -1.99 4.65 -26.73 -0.12 -2.12 16 16 C 0.03 0.73 4.86 -27.88 -0.14 0.60 16 17 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 18 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -27.48 13.29 55.43 0.74 -26.75 16 21 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 22 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 C 0.06 0.72 6.16 -2.18 -0.01 0.71 16 26 C -0.12 -1.55 6.82 -89.30 -0.61 -2.16 16 27 H 0.12 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 32 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 33 H 0.06 0.76 5.57 -51.93 -0.29 0.47 16 34 H 0.10 1.53 7.74 -51.93 -0.40 1.13 16 35 H 0.05 0.57 6.12 -51.94 -0.32 0.25 16 36 H 0.06 0.75 6.36 -51.93 -0.33 0.42 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.05 0.96 7.18 -51.93 -0.37 0.59 16 40 H 0.03 0.92 7.75 -51.93 -0.40 0.52 16 41 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.05 0.57 5.99 -51.93 -0.31 0.26 16 LS Contribution 353.10 15.07 5.32 5.32 Total: -1.00 -32.46 353.10 -9.54 -42.01 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -7.44 Total: -1.90 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -1.37 Total: -14.73 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: -0.33 Total: -35.55 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.70 Total: -12.23 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.46 -9.54 -42.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.560 kcal (2) G-P(sol) polarization free energy of solvation -32.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds