Wall clock time and date at job start Tue Mar 31 2020 05:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34234 * 116.99556 * 2 1 4 4 O 1.20821 * 120.00343 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99601 * 179.97438 * 3 2 1 6 6 H 1.08997 * 110.33357 * 317.88972 * 5 3 2 7 7 C 1.56032 * 110.29459 * 79.99925 * 5 3 2 8 8 H 1.08994 * 117.07357 * 319.35344 * 7 5 3 9 9 C 1.56071 * 103.97767 * 189.50157 * 7 5 3 10 10 C 1.54652 * 104.16633 * 292.54717 * 9 7 5 11 11 C 1.55914 * 104.49278 * 359.14598 * 10 9 7 12 12 H 1.09004 * 116.33189 * 199.78869 * 11 10 9 13 13 C 1.56903 * 100.76295 * 326.09617 * 11 10 9 14 14 N 1.48201 * 110.29133 * 195.79328 * 5 3 2 15 15 C 1.46890 * 111.00198 * 119.26276 * 14 5 3 16 16 H 1.08997 * 109.47337 * 43.52552 * 15 14 5 17 17 C 1.53004 * 109.47268 * 163.52422 * 15 14 5 18 18 C 1.53005 * 109.47165 * 283.52559 * 15 14 5 19 19 C 1.52993 * 109.46983 * 68.10490 * 18 15 14 20 20 C 1.50712 * 109.46989 * 173.96431 * 19 18 15 21 21 H 1.07996 * 119.99613 * 359.97438 * 20 19 18 22 22 C 1.37873 * 119.99616 * 180.02562 * 20 19 18 23 23 N 1.31515 * 120.00597 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99613 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47398 * 59.99338 * 24 22 20 26 26 H 1.48502 * 109.47235 * 179.97438 * 24 22 20 27 27 H 1.48509 * 109.46739 * 299.99525 * 24 22 20 28 28 H 1.09004 * 109.47224 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47450 * 300.00071 * 1 2 3 30 30 H 1.09007 * 109.47202 * 60.00251 * 1 2 3 31 31 H 1.09004 * 110.49327 * 51.22097 * 9 7 5 32 32 H 1.08998 * 110.48726 * 173.87582 * 9 7 5 33 33 H 1.09005 * 110.43087 * 117.89999 * 10 9 7 34 34 H 1.08997 * 110.43036 * 240.38892 * 10 9 7 35 35 H 1.09003 * 112.19197 * 297.81746 * 13 11 10 36 36 H 1.09002 * 112.19138 * 170.85636 * 13 11 10 37 37 H 1.08999 * 109.47427 * 305.58142 * 17 15 14 38 38 H 1.09005 * 109.47046 * 65.58194 * 17 15 14 39 39 H 1.09002 * 109.47148 * 185.57514 * 17 15 14 40 40 H 1.09001 * 109.47084 * 188.10357 * 18 15 14 41 41 H 1.08998 * 109.46967 * 308.09988 * 18 15 14 42 42 H 1.08999 * 109.47296 * 293.96057 * 19 18 15 43 43 H 1.08996 * 109.47671 * 53.96251 * 19 18 15 44 44 H 0.96997 * 120.00133 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9839 0.5378 0.6862 7 6 4.1206 1.0492 -1.4404 8 1 3.6421 0.2752 -2.0403 9 6 5.6616 0.9121 -1.2343 10 6 6.1091 2.3202 -0.7776 11 6 4.7987 3.1650 -0.7768 12 1 4.9213 4.2476 -0.8113 13 6 4.0338 2.5204 -1.9856 14 7 4.0094 2.6377 0.3788 15 6 4.8229 2.6063 1.6014 16 1 5.5283 1.7771 1.5474 17 6 5.5921 3.9221 1.7361 18 6 3.9112 2.4219 2.8162 19 6 3.2963 1.0213 2.7844 20 6 2.5177 0.7856 4.0530 21 1 2.4669 1.5574 4.8067 22 6 1.8711 -0.4159 4.2518 23 7 1.9334 -1.3560 3.3342 24 14 0.9054 -0.7078 5.8239 25 1 -0.1755 0.3043 5.9361 26 1 0.3087 -2.0673 5.7931 27 1 1.8150 -0.5922 6.9922 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 5.8792 0.1735 -0.4627 32 1 6.1492 0.6418 -2.1709 33 1 6.5350 2.2776 0.2250 34 1 6.8302 2.7370 -1.4807 35 1 4.5715 2.6432 -2.9258 36 1 3.0048 2.8729 -2.0569 37 1 6.1659 4.1023 0.8271 38 1 4.8883 4.7403 1.8897 39 1 6.2698 3.8613 2.5877 40 1 4.4939 2.5422 3.7295 41 1 3.1170 3.1681 2.7910 42 1 2.6284 0.9371 1.9272 43 1 4.0893 0.2781 2.7014 44 1 1.4782 -2.2010 3.4739 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172506339.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:32 Heat of formation + Delta-G solvation = -58.998511 kcal Electronic energy + Delta-G solvation = -24612.749486 eV Core-core repulsion = 21337.949820 eV Total energy + Delta-G solvation = -3274.799666 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.23467 -39.04514 -35.49845 -35.42732 -32.89238 -31.15488 -30.33227 -28.43240 -27.74873 -27.09591 -25.08635 -24.02655 -21.45971 -20.56366 -20.35673 -19.73621 -18.49536 -16.91999 -16.59190 -16.29168 -15.79277 -15.26047 -15.14423 -14.49079 -14.30266 -13.92023 -12.98277 -12.76598 -12.72481 -12.44147 -12.39685 -12.10308 -11.75259 -11.61804 -11.44095 -11.34425 -11.20037 -11.00750 -10.97885 -10.91075 -10.87024 -10.69418 -10.43052 -10.38490 -10.25743 -9.94159 -9.70230 -9.44271 -9.13620 -8.87605 -8.25903 -7.85485 -5.91630 -3.93409 3.01817 3.33782 3.36709 3.39816 3.43567 4.29671 4.50851 4.53892 4.59689 4.76604 5.20682 5.27474 5.38833 5.42154 5.42582 5.46196 5.50222 5.66412 5.71750 5.73998 5.81777 5.87695 5.90660 5.92247 6.00591 6.06318 6.10326 6.13675 6.20599 6.28855 6.31973 6.40449 6.47531 6.61500 6.92352 7.11933 7.19329 7.31063 7.47568 7.70447 7.89968 8.04432 8.50781 8.68216 9.10426 9.68751 11.17662 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018419 B = 0.006990 C = 0.005793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.782675 B = 4004.914318 C = 4832.077120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.346 6.346 3 C 0.483 3.517 4 O -0.502 6.502 5 C 0.083 3.917 6 H 0.115 0.885 7 C -0.112 4.112 8 H 0.110 0.890 9 C -0.120 4.120 10 C -0.167 4.167 11 C 0.066 3.934 12 H 0.116 0.884 13 C -0.129 4.129 14 N -0.490 5.490 15 C 0.073 3.927 16 H 0.045 0.955 17 C -0.150 4.150 18 C -0.107 4.107 19 C 0.016 3.984 20 C -0.520 4.520 21 H 0.051 0.949 22 C 0.060 3.940 23 N -0.884 5.884 24 Si 0.885 3.115 25 H -0.278 1.278 26 H -0.288 1.288 27 H -0.278 1.278 28 H 0.092 0.908 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.027 0.973 43 H 0.009 0.991 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.592 4.817 -11.576 14.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.262 6.262 3 C 0.326 3.674 4 O -0.389 6.389 5 C -0.027 4.027 6 H 0.133 0.867 7 C -0.131 4.131 8 H 0.128 0.872 9 C -0.158 4.158 10 C -0.205 4.205 11 C -0.042 4.042 12 H 0.134 0.866 13 C -0.167 4.167 14 N -0.215 5.215 15 C -0.035 4.035 16 H 0.063 0.937 17 C -0.208 4.208 18 C -0.145 4.145 19 C -0.020 4.020 20 C -0.558 4.558 21 H 0.070 0.930 22 C -0.142 4.142 23 N -0.523 5.523 24 Si 0.713 3.287 25 H -0.204 1.204 26 H -0.213 1.213 27 H -0.204 1.204 28 H 0.110 0.890 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.045 0.955 43 H 0.027 0.973 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.861 5.262 -11.464 13.909 hybrid contribution -0.149 -0.795 0.972 1.264 sum 5.712 4.468 -10.492 12.754 Atomic orbital electron populations 1.23022 0.77408 1.02784 1.01392 1.86541 1.22464 1.33195 1.83957 1.23093 0.91311 0.81316 0.71712 1.90565 1.66705 1.36510 1.45141 1.22519 0.89054 0.93434 0.97666 0.86734 1.23994 0.96321 0.98128 0.94703 0.87152 1.22667 0.94392 0.97259 1.01468 1.23456 0.98672 0.95981 1.02415 1.24248 0.91079 0.98566 0.90276 0.86610 1.23751 1.01368 0.94437 0.97158 1.64102 1.37004 1.18008 1.02415 1.22022 0.94033 0.96569 0.90845 0.93698 1.22039 0.99730 0.97775 1.01211 1.21726 0.97739 1.01254 0.93740 1.19436 0.95255 0.89836 0.97521 1.21179 1.31392 0.99797 1.03452 0.93050 1.24974 0.96550 0.96315 0.96314 1.69970 1.43397 1.05497 1.33409 0.86776 0.80485 0.77124 0.84303 1.20411 1.21331 1.20378 0.88958 0.91973 0.93344 0.91166 0.91295 0.90137 0.91594 0.90538 0.90082 0.92610 0.92021 0.92424 0.92852 0.92392 0.95493 0.97262 0.93171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.88 10.56 101.05 1.07 1.95 16 2 O -0.35 -7.43 10.46 -39.27 -0.41 -7.84 16 3 C 0.48 10.38 4.62 36.01 0.17 10.55 16 4 O -0.50 -11.78 16.18 -18.75 -0.30 -12.08 16 5 C 0.08 1.54 1.40 -66.52 -0.09 1.45 16 6 H 0.12 2.39 5.07 -51.93 -0.26 2.13 16 7 C -0.11 -1.60 4.71 -85.11 -0.40 -2.00 16 8 H 0.11 1.47 8.14 -51.93 -0.42 1.05 16 9 C -0.12 -1.48 6.23 -24.22 -0.15 -1.63 16 10 C -0.17 -1.97 5.18 -24.31 -0.13 -2.10 16 11 C 0.07 0.89 3.89 -62.56 -0.24 0.65 16 12 H 0.12 1.42 7.61 -51.93 -0.39 1.03 16 13 C -0.13 -1.70 6.51 -22.37 -0.15 -1.85 16 14 N -0.49 -8.59 4.31 -202.91 -0.87 -9.47 16 15 C 0.07 1.28 1.52 -67.71 -0.10 1.17 16 16 H 0.05 0.79 6.19 -51.93 -0.32 0.47 16 17 C -0.15 -2.11 8.37 37.16 0.31 -1.79 16 18 C -0.11 -2.32 4.82 -26.73 -0.13 -2.45 16 19 C 0.02 0.41 3.48 -27.88 -0.10 0.32 16 20 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 21 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 22 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 23 N -0.88 -25.92 13.29 55.43 0.74 -25.18 16 24 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16 30 H 0.05 0.77 8.13 -51.93 -0.42 0.34 16 31 H 0.07 0.93 7.87 -51.93 -0.41 0.52 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.08 1.01 4.75 -51.93 -0.25 0.77 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.23 7.85 -51.93 -0.41 0.82 16 37 H 0.05 0.67 5.31 -51.93 -0.28 0.39 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.05 1.12 8.13 -51.93 -0.42 0.70 16 41 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 42 H 0.03 0.73 3.53 -51.93 -0.18 0.54 16 43 H 0.01 0.25 7.66 -51.93 -0.40 -0.15 16 44 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 332.38 15.07 5.01 5.01 Total: -1.00 -32.20 332.38 -8.31 -40.51 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -7.09 Total: 1.54 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -0.36 Total: -9.43 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: -0.14 Total: -34.65 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.71 Total: -19.92 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.20 -8.31 -40.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506339.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.491 kcal (2) G-P(sol) polarization free energy of solvation -32.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds