Wall clock time and date at job start Tue Mar 31 2020 05:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34233 * 116.99860 * 2 1 4 4 O 1.20833 * 120.00059 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00313 * 179.97438 * 3 2 1 6 6 H 1.09003 * 110.33898 * 329.63824 * 5 3 2 7 7 C 1.54554 * 110.38621 * 207.36095 * 5 3 2 8 8 N 1.48614 * 104.64458 * 217.30385 * 7 5 3 9 9 C 1.46897 * 111.00518 * 158.72509 * 8 7 5 10 10 H 1.09007 * 109.47314 * 304.24823 * 9 8 7 11 11 C 1.52990 * 109.47719 * 184.24185 * 9 8 7 12 12 C 1.53007 * 109.47007 * 64.24046 * 9 8 7 13 13 C 1.52997 * 109.47180 * 185.59999 * 12 9 8 14 14 C 1.50700 * 109.46791 * 174.35912 * 13 12 9 15 15 H 1.07995 * 120.00189 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99728 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00160 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99902 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47503 * 89.99789 * 18 16 14 20 20 H 1.48503 * 109.46944 * 209.99674 * 18 16 14 21 21 H 1.48503 * 109.47130 * 329.99616 * 18 16 14 22 22 C 1.48730 * 104.35764 * 39.09036 * 8 7 5 23 23 C 1.53632 * 110.47435 * 91.96928 * 5 3 2 24 24 C 1.52284 * 121.47447 * 335.18605 * 23 5 3 25 25 C 1.52294 * 121.45435 * 262.94186 * 23 5 3 26 26 H 1.09001 * 109.47102 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47308 * 299.99995 * 1 2 3 28 28 H 1.09002 * 109.47119 * 59.99924 * 1 2 3 29 29 H 1.09001 * 110.40157 * 98.51777 * 7 5 3 30 30 H 1.09000 * 110.40285 * 336.09651 * 7 5 3 31 31 H 1.09000 * 109.47387 * 60.00272 * 11 9 8 32 32 H 1.09007 * 109.47548 * 180.02562 * 11 9 8 33 33 H 1.08999 * 109.47428 * 300.00426 * 11 9 8 34 34 H 1.09000 * 109.46864 * 65.59410 * 12 9 8 35 35 H 1.08997 * 109.46769 * 305.59828 * 12 9 8 36 36 H 1.08998 * 109.47336 * 54.35754 * 13 12 9 37 37 H 1.09006 * 109.46812 * 294.35429 * 13 12 9 38 38 H 0.96995 * 120.00235 * 179.97438 * 17 16 14 39 39 H 1.09003 * 110.44735 * 79.90186 * 22 8 7 40 40 H 1.09000 * 110.45030 * 202.44337 * 22 8 7 41 41 H 1.09006 * 117.51199 * 356.59923 * 24 23 5 42 42 H 1.09000 * 117.51686 * 141.72153 * 24 23 5 43 43 H 1.08999 * 117.51377 * 218.29856 * 25 23 5 44 44 H 1.08998 * 117.51968 * 3.38542 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9906 0.4143 0.5175 7 6 4.0361 2.5883 0.6663 8 7 5.2189 3.0101 -0.1284 9 6 5.4772 4.4470 0.0341 10 1 4.5825 5.0096 -0.2328 11 6 6.6327 4.8639 -0.8778 12 6 5.8465 4.7373 1.4903 13 6 5.9790 6.2482 1.6914 14 6 6.2056 6.5426 3.1519 15 1 6.2502 5.7330 3.8653 16 6 6.3561 7.8455 3.5772 17 7 6.3023 8.8312 2.7084 18 14 6.6377 8.2103 5.3875 19 1 8.0953 8.2112 5.6714 20 1 6.0680 9.5412 5.7186 21 1 5.9735 7.1686 6.2116 22 6 4.8521 2.6902 -1.5338 23 6 4.1008 1.3523 -1.4376 24 6 3.3026 0.8045 -2.6131 25 6 4.5943 0.1114 -2.1697 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 4.3198 2.4083 1.7033 30 1 3.2523 3.3438 0.6115 31 1 6.3697 4.6572 -1.9152 32 1 6.8247 5.9301 -0.7569 33 1 7.5274 4.3015 -0.6109 34 1 6.7944 4.2545 1.7279 35 1 5.0672 4.3504 2.1467 36 1 5.0651 6.7406 1.3590 37 1 6.8236 6.6193 1.1106 38 1 6.4077 9.7478 3.0077 39 1 4.2019 3.4635 -1.9431 40 1 5.7474 2.5811 -2.1458 41 1 2.3605 0.3028 -2.3919 42 1 3.3281 1.3683 -3.5456 43 1 5.4693 0.2196 -2.8107 44 1 4.5025 -0.8459 -1.6567 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172506359.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:17 Heat of formation + Delta-G solvation = -65.577453 kcal Electronic energy + Delta-G solvation = -22710.249542 eV Core-core repulsion = 19435.164592 eV Total energy + Delta-G solvation = -3275.084950 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.09131 -39.25829 -36.70499 -36.60431 -33.81864 -32.34564 -30.56605 -28.62100 -27.56401 -26.99738 -24.71857 -23.32224 -22.70871 -21.51364 -20.89538 -19.51992 -19.00646 -17.72370 -16.72145 -16.70393 -16.27035 -15.68011 -15.29723 -14.49067 -14.32022 -14.23459 -14.01127 -13.49775 -13.37352 -13.20712 -12.46130 -12.36215 -12.21088 -12.08436 -11.98104 -11.69798 -11.49448 -11.19568 -11.13066 -11.01932 -10.96752 -10.73812 -10.68394 -10.59199 -10.45048 -10.20776 -9.90973 -9.59045 -9.26315 -8.98369 -8.30150 -8.22567 -5.95658 -3.97290 2.02816 2.44985 3.34968 3.40974 3.44671 3.52372 4.12807 4.17518 4.45097 4.50590 4.54615 4.69915 4.85465 4.86543 4.94040 5.11373 5.27040 5.35047 5.40156 5.41527 5.48700 5.54304 5.59011 5.68583 5.74633 5.83337 5.89207 5.95479 5.96911 5.99396 6.19002 6.30432 6.41624 6.64518 6.73199 6.76082 7.01026 7.22245 7.39803 7.59370 7.73503 7.89129 8.05042 8.48686 9.09845 9.66359 11.15774 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021804 B = 0.003759 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.847480 B = 7447.323146 C = 8308.248850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.360 6.360 3 C 0.470 3.530 4 O -0.498 6.498 5 C -0.052 4.052 6 H 0.113 0.887 7 C 0.045 3.955 8 N -0.499 5.499 9 C 0.070 3.930 10 H 0.041 0.959 11 C -0.140 4.140 12 C -0.100 4.100 13 C 0.023 3.977 14 C -0.518 4.518 15 H 0.054 0.946 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.070 3.930 23 C -0.121 4.121 24 C -0.172 4.172 25 C -0.149 4.149 26 H 0.100 0.900 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.047 0.953 36 H 0.013 0.987 37 H 0.019 0.981 38 H 0.260 0.740 39 H 0.050 0.950 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.498 -19.583 -10.765 23.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.277 6.277 3 C 0.312 3.688 4 O -0.384 6.384 5 C -0.072 4.072 6 H 0.131 0.869 7 C -0.083 4.083 8 N -0.223 5.223 9 C -0.038 4.038 10 H 0.059 0.941 11 C -0.198 4.198 12 C -0.138 4.138 13 C -0.015 4.015 14 C -0.556 4.556 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.058 4.058 23 C -0.122 4.122 24 C -0.210 4.210 25 C -0.186 4.186 26 H 0.119 0.881 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.112 0.888 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.031 0.969 37 H 0.038 0.962 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.104 0.896 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.226 -19.335 -10.596 23.202 hybrid contribution -0.910 0.809 0.779 1.445 sum -8.135 -18.526 -9.817 22.490 Atomic orbital electron populations 1.23266 0.76513 1.03573 1.02672 1.86528 1.23319 1.33606 1.84209 1.23642 0.91864 0.81309 0.71992 1.90684 1.66898 1.36287 1.44519 1.21292 0.86455 1.02426 0.96994 0.86894 1.23128 0.93129 0.93380 0.98658 1.65566 1.33707 1.18699 1.04351 1.22041 0.97710 0.85167 0.98833 0.94110 1.21843 0.98197 1.02451 0.97289 1.21683 1.00406 1.00440 0.91289 1.19125 0.97069 0.88655 0.96647 1.21264 1.48809 0.92076 0.93473 0.92739 1.25015 0.95518 0.96465 0.97466 1.69961 1.50654 0.99229 1.33746 0.86617 0.78333 0.77578 0.85614 1.20680 1.21288 1.19907 1.22537 0.98136 0.92787 0.92354 1.21437 1.03281 0.96785 0.90700 1.23012 0.96058 1.03706 0.98188 1.22965 0.97655 0.95561 1.02380 0.88143 0.91776 0.91968 0.88821 0.91415 0.93983 0.91043 0.92142 0.92598 0.93381 0.96901 0.96223 0.93080 0.93204 0.89586 0.88801 0.88200 0.88010 0.88234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.95 10.21 -39.27 -0.40 -4.35 16 3 C 0.47 6.14 5.91 36.00 0.21 6.36 16 4 O -0.50 -8.03 15.42 -18.76 -0.29 -8.32 16 5 C -0.05 -0.64 3.43 -90.63 -0.31 -0.95 16 6 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 7 C 0.05 0.67 5.02 -2.06 -0.01 0.66 16 8 N -0.50 -7.67 5.20 -222.12 -1.15 -8.82 16 9 C 0.07 1.25 1.90 -67.72 -0.13 1.12 16 10 H 0.04 0.78 7.98 -51.93 -0.41 0.37 16 11 C -0.14 -2.31 8.83 37.15 0.33 -1.98 16 12 C -0.10 -2.12 4.68 -26.73 -0.12 -2.25 16 13 C 0.02 0.59 4.60 -27.88 -0.13 0.46 16 14 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 15 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 18 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.07 0.91 5.12 -2.42 -0.01 0.89 16 23 C -0.12 -1.37 2.32 -154.52 -0.36 -1.72 16 24 C -0.17 -1.64 9.68 -27.02 -0.26 -1.91 16 25 C -0.15 -1.31 10.27 -27.01 -0.28 -1.58 16 26 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 28 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 29 H 0.09 1.38 7.58 -51.93 -0.39 0.99 16 30 H 0.07 1.16 6.63 -51.93 -0.34 0.81 16 31 H 0.04 0.59 6.96 -51.93 -0.36 0.23 16 32 H 0.07 1.29 6.71 -51.93 -0.35 0.94 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.05 1.02 6.80 -51.93 -0.35 0.66 16 36 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.02 0.53 6.86 -51.93 -0.36 0.18 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.05 0.69 7.96 -51.93 -0.41 0.28 16 40 H 0.09 1.02 7.68 -51.93 -0.40 0.62 16 41 H 0.09 0.90 7.08 -51.93 -0.37 0.54 16 42 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 351.55 15.07 5.30 5.30 Total: -1.00 -32.15 351.55 -8.77 -40.92 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -7.52 Total: -1.92 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -0.42 Total: -13.24 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: -0.42 Total: -35.37 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -0.69 Total: -12.67 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.15 -8.77 -40.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506359.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.659 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds