Wall clock time and date at job start Tue Mar 31 2020 05:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34221 * 117.00181 * 2 1 4 4 O 1.20825 * 120.00248 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00424 * 179.97438 * 3 2 1 6 6 H 1.08998 * 110.33921 * 27.43500 * 5 3 2 7 7 C 1.54557 * 110.48018 * 149.77290 * 5 3 2 8 8 N 1.48623 * 104.64276 * 142.62370 * 7 5 3 9 9 C 1.46895 * 110.99870 * 201.27928 * 8 7 5 10 10 H 1.09004 * 109.47066 * 56.04517 * 9 8 7 11 11 C 1.52997 * 109.47095 * 176.04271 * 9 8 7 12 12 C 1.53000 * 109.47239 * 296.04324 * 9 8 7 13 13 C 1.53008 * 109.46928 * 174.75839 * 12 9 8 14 14 C 1.50700 * 109.46623 * 185.15153 * 13 12 9 15 15 H 1.07998 * 120.00684 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99730 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00335 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00292 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47262 * 89.99682 * 18 16 14 20 20 H 1.48496 * 109.47657 * 209.99943 * 18 16 14 21 21 H 1.48506 * 109.47014 * 329.99928 * 18 16 14 22 22 C 1.48724 * 104.35754 * 320.91838 * 8 7 5 23 23 C 1.53622 * 110.38196 * 265.16993 * 5 3 2 24 24 C 1.52296 * 121.45302 * 97.02018 * 23 5 3 25 25 C 1.52283 * 121.48127 * 24.77657 * 23 5 3 26 26 H 1.09001 * 109.47623 * 300.00062 * 1 2 3 27 27 H 1.09000 * 109.47170 * 60.00350 * 1 2 3 28 28 H 1.09008 * 109.47278 * 180.02562 * 1 2 3 29 29 H 1.08997 * 110.40534 * 261.40989 * 7 5 3 30 30 H 1.08993 * 110.40147 * 23.83728 * 7 5 3 31 31 H 1.09006 * 109.47426 * 180.02562 * 11 9 8 32 32 H 1.08997 * 109.47437 * 300.00119 * 11 9 8 33 33 H 1.09004 * 109.47437 * 59.99942 * 11 9 8 34 34 H 1.09002 * 109.47260 * 294.75668 * 12 9 8 35 35 H 1.08991 * 109.47171 * 54.75876 * 12 9 8 36 36 H 1.08999 * 109.47073 * 305.14995 * 13 12 9 37 37 H 1.08993 * 109.47331 * 65.15463 * 13 12 9 38 38 H 0.97000 * 120.00903 * 179.97438 * 17 16 14 39 39 H 1.08998 * 110.44932 * 280.10118 * 22 8 7 40 40 H 1.09001 * 110.45144 * 157.55641 * 22 8 7 41 41 H 1.08995 * 117.52007 * 356.55646 * 24 23 5 42 42 H 1.09005 * 117.52039 * 141.69167 * 24 23 5 43 43 H 1.08999 * 117.51527 * 218.27372 * 25 23 5 44 44 H 1.09001 * 117.51858 * 3.39312 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9923 0.3887 -0.4700 7 6 4.0411 2.5523 -0.7284 8 7 5.2202 3.0130 0.0503 9 6 5.4807 4.4396 -0.1835 10 1 4.5867 5.0160 0.0549 11 6 6.6365 4.8996 0.7072 12 6 5.8509 4.6565 -1.6520 13 6 5.9944 6.1551 -1.9258 14 6 6.2340 6.3761 -3.3971 15 1 6.2790 5.5324 -4.0698 16 6 6.3948 7.6557 -3.8848 17 7 6.6034 7.8487 -5.1688 18 14 6.3164 9.1153 -2.7216 19 1 7.6766 9.4086 -2.2030 20 1 5.7978 10.3011 -3.4496 21 1 5.4124 8.7963 -1.5874 22 6 4.8457 2.7648 1.4681 23 6 4.0936 1.4242 1.4357 24 6 4.5826 0.2216 2.2319 25 6 3.2893 0.9367 2.6333 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 4.3299 2.3198 -1.7534 30 1 3.2579 3.3102 -0.7159 31 1 6.8296 5.9584 0.5341 32 1 6.3728 4.7451 1.7534 33 1 7.5305 4.3232 0.4689 34 1 6.7951 4.1559 -1.8665 35 1 5.0683 4.2442 -2.2888 36 1 5.0811 6.6684 -1.6253 37 1 6.8367 6.5492 -1.3573 38 1 6.7162 8.7490 -5.5120 39 1 4.1941 3.5582 1.8343 40 1 5.7378 2.6861 2.0894 41 1 4.4918 -0.7604 1.7677 42 1 5.4545 0.3613 2.8709 43 1 3.3106 1.5469 3.5363 44 1 2.3478 0.4251 2.4331 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172506360.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:20 Heat of formation + Delta-G solvation = -61.938569 kcal Electronic energy + Delta-G solvation = -22765.433019 eV Core-core repulsion = 19490.505862 eV Total energy + Delta-G solvation = -3274.927157 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.13055 -39.31681 -36.80397 -36.62986 -33.89999 -32.36031 -30.77446 -28.88085 -27.69506 -27.10983 -24.87584 -23.35228 -22.74732 -21.37828 -20.80906 -19.58442 -19.10413 -17.77168 -16.83229 -16.72966 -16.54691 -15.80531 -15.38341 -14.46501 -14.37499 -14.21137 -14.04744 -13.55607 -13.35311 -13.27902 -12.59854 -12.54524 -12.44871 -12.24076 -12.06127 -11.75098 -11.64437 -11.30052 -11.28459 -11.13327 -11.01900 -10.78291 -10.69727 -10.62365 -10.53509 -9.96436 -9.85450 -9.66609 -9.48916 -9.10684 -8.49499 -8.31847 -6.00282 -3.97613 1.99690 2.42137 3.33033 3.40447 3.44398 3.48108 4.05988 4.11871 4.40685 4.48691 4.50696 4.64690 4.81425 4.84627 4.92350 5.06825 5.24632 5.30434 5.33400 5.37165 5.40258 5.42111 5.50400 5.64035 5.67225 5.75928 5.82271 5.84853 5.90118 5.93755 6.13155 6.18222 6.26771 6.48497 6.55437 6.58078 6.86938 7.03228 7.25104 7.38068 7.50444 7.56549 7.84759 8.59065 9.05419 9.62573 11.13360 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022547 B = 0.003901 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.525089 B = 7175.704952 C = 7884.109408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.470 3.530 4 O -0.498 6.498 5 C -0.052 4.052 6 H 0.113 0.887 7 C 0.045 3.955 8 N -0.498 5.498 9 C 0.067 3.933 10 H 0.041 0.959 11 C -0.142 4.142 12 C -0.093 4.093 13 C -0.013 4.013 14 C -0.517 4.517 15 H 0.071 0.929 16 C 0.065 3.935 17 N -0.905 5.905 18 Si 0.878 3.122 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.266 1.266 22 C 0.070 3.930 23 C -0.121 4.121 24 C -0.149 4.149 25 C -0.172 4.172 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.043 0.957 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.012 0.988 37 H 0.014 0.986 38 H 0.262 0.738 39 H 0.050 0.950 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.283 -17.365 16.552 25.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.312 3.688 4 O -0.385 6.385 5 C -0.072 4.072 6 H 0.132 0.868 7 C -0.083 4.083 8 N -0.222 5.222 9 C -0.040 4.040 10 H 0.059 0.941 11 C -0.199 4.199 12 C -0.131 4.131 13 C -0.051 4.051 14 C -0.555 4.555 15 H 0.089 0.911 16 C -0.135 4.135 17 N -0.544 5.544 18 Si 0.706 3.294 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.190 1.190 22 C -0.058 4.058 23 C -0.122 4.122 24 C -0.185 4.185 25 C -0.209 4.209 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.119 0.881 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.031 0.969 37 H 0.032 0.968 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.104 0.896 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.990 -17.179 16.253 24.962 hybrid contribution -1.075 1.365 0.637 1.851 sum -9.065 -15.814 16.889 24.849 Atomic orbital electron populations 1.23271 0.76463 1.03615 1.02668 1.86526 1.23356 1.33576 1.84163 1.23623 0.91838 0.81326 0.71987 1.90677 1.66920 1.36307 1.44565 1.21284 0.86535 1.02601 0.96760 0.86844 1.23138 0.93042 0.93721 0.98400 1.65544 1.33944 1.19094 1.03607 1.22065 0.97655 0.85743 0.98580 0.94115 1.21858 0.98453 1.01966 0.97656 1.21503 1.01210 0.99210 0.91135 1.19605 0.96146 0.91751 0.97553 1.21154 1.48735 0.93933 0.91709 0.91054 1.25028 0.94675 0.98911 0.94914 1.69916 1.50032 1.21768 1.12723 0.86795 0.78728 0.82364 0.81517 1.20280 1.21452 1.19049 1.22537 0.98099 0.93020 0.92139 1.21426 1.03310 0.97203 0.90254 1.22973 0.97660 0.95822 1.02092 1.23000 0.95977 1.03712 0.98228 0.91989 0.91739 0.88110 0.88619 0.91479 0.91482 0.93768 0.91815 0.91963 0.92731 0.96941 0.96770 0.92813 0.93210 0.89554 0.88185 0.87984 0.88198 0.88859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.88 10.37 -39.23 -0.41 -4.29 16 3 C 0.47 6.01 5.81 36.01 0.21 6.22 16 4 O -0.50 -7.85 15.50 -18.75 -0.29 -8.15 16 5 C -0.05 -0.62 3.43 -90.63 -0.31 -0.93 16 6 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 7 C 0.04 0.65 5.02 -2.05 -0.01 0.64 16 8 N -0.50 -7.30 5.20 -222.13 -1.15 -8.45 16 9 C 0.07 1.13 1.90 -67.72 -0.13 1.00 16 10 H 0.04 0.72 7.98 -51.93 -0.41 0.31 16 11 C -0.14 -2.15 8.83 37.16 0.33 -1.82 16 12 C -0.09 -1.88 4.67 -26.73 -0.12 -2.00 16 13 C -0.01 -0.31 3.67 -27.88 -0.10 -0.41 16 14 C -0.52 -15.01 9.66 -34.44 -0.33 -15.34 16 15 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 16 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 17 N -0.91 -28.38 13.96 55.43 0.77 -27.61 16 18 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 22 C 0.07 0.86 5.14 -2.43 -0.01 0.85 16 23 C -0.12 -1.31 2.32 -154.52 -0.36 -1.67 16 24 C -0.15 -1.25 10.27 -27.02 -0.28 -1.53 16 25 C -0.17 -1.58 9.67 -27.02 -0.26 -1.84 16 26 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 27 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 28 H 0.10 0.50 8.14 -51.92 -0.42 0.08 16 29 H 0.10 1.37 7.58 -51.93 -0.39 0.98 16 30 H 0.07 1.10 6.68 -51.93 -0.35 0.75 16 31 H 0.07 1.08 6.69 -51.93 -0.35 0.73 16 32 H 0.04 0.57 6.97 -51.93 -0.36 0.21 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.05 1.12 6.81 -51.93 -0.35 0.77 16 36 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 37 H 0.01 0.33 6.26 -51.93 -0.32 0.01 16 38 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 39 H 0.05 0.65 7.96 -51.93 -0.41 0.24 16 40 H 0.09 0.96 7.68 -51.93 -0.40 0.57 16 41 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.09 0.87 7.19 -51.93 -0.37 0.50 16 LS Contribution 348.22 15.07 5.25 5.25 Total: -1.00 -32.71 348.22 -8.41 -41.11 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -7.49 Total: -1.65 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -0.41 Total: -13.66 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: -0.38 Total: -36.06 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: -0.70 Total: -12.43 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.71 -8.41 -41.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506360.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.825 kcal (2) G-P(sol) polarization free energy of solvation -32.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds