Wall clock time and date at job start Tue Mar 31 2020 05:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34235 * 117.00310 * 2 1 4 4 O 1.20823 * 119.99915 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99803 * 180.02562 * 3 2 1 6 6 H 1.08991 * 110.68072 * 330.21154 * 5 3 2 7 7 C 1.55097 * 110.91950 * 206.84323 * 5 3 2 8 8 N 1.48591 * 103.33911 * 204.78627 * 7 5 3 9 9 C 1.46895 * 110.99785 * 159.37924 * 8 7 5 10 10 H 1.09006 * 109.47393 * 189.85298 * 9 8 7 11 11 C 1.53004 * 109.46956 * 309.84995 * 9 8 7 12 12 C 1.53005 * 109.47544 * 69.84928 * 9 8 7 13 13 C 1.52997 * 109.46741 * 65.00189 * 12 9 8 14 14 C 1.50700 * 109.47188 * 180.02562 * 13 12 9 15 15 H 1.08003 * 119.99855 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00050 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99952 * 359.72446 * 16 14 13 18 18 Si 1.86808 * 119.99682 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47105 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47127 * 120.00219 * 18 16 14 21 21 H 1.48501 * 109.46543 * 239.99955 * 18 16 14 22 22 C 1.48095 * 105.87329 * 38.82935 * 8 7 5 23 23 C 1.53369 * 106.75331 * 334.80359 * 22 8 7 24 24 C 1.52290 * 121.62277 * 217.51475 * 23 22 8 25 25 C 1.52311 * 121.59202 * 145.15321 * 23 22 8 26 26 H 1.08992 * 109.47015 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46740 * 299.99544 * 1 2 3 28 28 H 1.08999 * 109.46941 * 59.99391 * 1 2 3 29 29 H 1.08998 * 110.64066 * 86.32207 * 7 5 3 30 30 H 1.08999 * 110.64551 * 323.25164 * 7 5 3 31 31 H 1.09000 * 109.46978 * 187.76596 * 11 9 8 32 32 H 1.08999 * 109.47421 * 307.76720 * 11 9 8 33 33 H 1.08996 * 109.47255 * 67.76986 * 11 9 8 34 34 H 1.08994 * 109.46997 * 305.00383 * 12 9 8 35 35 H 1.09001 * 109.47393 * 184.99934 * 12 9 8 36 36 H 1.08999 * 109.47318 * 59.99882 * 13 12 9 37 37 H 1.09001 * 109.46970 * 300.00005 * 13 12 9 38 38 H 0.97007 * 119.99818 * 180.02562 * 17 16 14 39 39 H 1.09004 * 110.00122 * 94.12842 * 22 8 7 40 40 H 1.08999 * 110.00360 * 215.43290 * 22 8 7 41 41 H 1.08999 * 117.51988 * 356.49073 * 24 23 22 42 42 H 1.09003 * 117.51970 * 141.61737 * 24 23 22 43 43 H 1.08998 * 117.52251 * 218.43570 * 25 23 22 44 44 H 1.09005 * 117.51790 * 3.56100 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9972 0.4110 0.5056 7 6 4.0522 2.5944 0.6537 8 7 5.3912 2.8060 0.0453 9 6 5.8017 4.2124 0.1524 10 1 6.6962 4.3766 -0.4485 11 6 4.6738 5.1129 -0.3554 12 6 6.1015 4.5463 1.6152 13 6 7.3101 3.7350 2.0860 14 6 7.6051 4.0633 3.5269 15 1 6.9921 4.7795 4.0540 16 6 8.6576 3.4495 4.1723 17 7 9.4007 2.5735 3.5322 18 14 9.0236 3.8572 5.9583 19 1 8.0454 4.8616 6.4472 20 1 8.9197 2.6239 6.7788 21 1 10.3974 4.4104 6.0681 22 6 5.2612 2.3975 -1.3722 23 6 4.1063 1.3905 -1.4380 24 6 4.1525 0.1818 -2.3633 25 6 3.1719 1.3253 -2.6390 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 4.1347 2.4798 1.7344 30 1 3.3820 3.4168 0.4035 31 1 5.0263 6.1431 -0.4060 32 1 4.3661 4.7851 -1.3484 33 1 3.8255 5.0523 0.3263 34 1 5.2358 4.2983 2.2292 35 1 6.3198 5.6102 1.7076 36 1 8.1758 3.9830 1.4719 37 1 7.0919 2.6711 1.9935 38 1 10.1410 2.1414 3.9864 39 1 5.0347 3.2656 -1.9912 40 1 6.1851 1.9289 -1.7114 41 1 5.0137 0.0864 -3.0246 42 1 3.7407 -0.7553 -1.9886 43 1 2.1153 1.1404 -2.4456 44 1 3.3882 1.9822 -3.4816 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172506361.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:22 Heat of formation + Delta-G solvation = -58.102837 kcal Electronic energy + Delta-G solvation = -23071.310264 eV Core-core repulsion = 19796.549438 eV Total energy + Delta-G solvation = -3274.760827 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.07576 -39.32390 -36.74509 -36.53243 -33.50389 -32.17267 -30.38887 -28.93111 -27.76448 -26.35671 -25.01719 -23.53525 -22.68554 -21.37037 -20.72716 -19.54638 -18.71466 -17.69123 -16.81779 -16.62182 -16.08937 -15.38024 -15.23885 -14.81302 -14.46054 -14.19730 -13.80071 -13.39691 -13.20222 -13.02876 -12.61947 -12.42318 -12.27350 -12.01459 -11.83794 -11.59455 -11.48110 -11.28551 -11.22288 -10.97683 -10.91703 -10.79875 -10.55868 -10.46846 -10.40405 -10.12475 -9.80341 -9.61809 -9.18649 -8.86383 -8.22648 -7.90096 -5.87078 -3.88233 2.07083 2.53457 3.37375 3.44786 3.48948 3.59252 4.18270 4.24539 4.55330 4.58166 4.64706 4.74224 4.89062 4.94857 4.97326 5.24777 5.29359 5.34761 5.46319 5.48498 5.49930 5.53185 5.59627 5.65253 5.73183 5.77144 5.93042 5.96496 6.05436 6.09135 6.17830 6.25134 6.33449 6.44319 6.66606 6.84006 7.23010 7.30343 7.47613 7.64409 7.86832 8.08530 8.23507 8.58793 9.20882 9.74515 11.23912 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019877 B = 0.004147 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.347427 B = 6750.017158 C = 7136.158908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.474 3.526 4 O -0.503 6.503 5 C -0.055 4.055 6 H 0.119 0.881 7 C 0.046 3.954 8 N -0.489 5.489 9 C 0.073 3.927 10 H 0.081 0.919 11 C -0.187 4.187 12 C -0.100 4.100 13 C 0.028 3.972 14 C -0.518 4.518 15 H 0.051 0.949 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.885 3.115 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.285 1.285 22 C 0.069 3.931 23 C -0.122 4.122 24 C -0.155 4.155 25 C -0.171 4.171 26 H 0.100 0.900 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.047 0.953 35 H 0.049 0.951 36 H 0.009 0.991 37 H 0.032 0.968 38 H 0.257 0.743 39 H 0.052 0.948 40 H 0.086 0.914 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.445 -4.873 -12.864 20.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.316 3.684 4 O -0.390 6.390 5 C -0.075 4.075 6 H 0.137 0.863 7 C -0.081 4.081 8 N -0.212 5.212 9 C -0.036 4.036 10 H 0.099 0.901 11 C -0.246 4.246 12 C -0.138 4.138 13 C -0.009 4.009 14 C -0.557 4.557 15 H 0.069 0.931 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.714 3.286 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.212 1.212 22 C -0.059 4.059 23 C -0.123 4.123 24 C -0.192 4.192 25 C -0.208 4.208 26 H 0.119 0.881 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.028 0.972 37 H 0.051 0.949 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.104 0.896 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.106 0.894 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.110 -4.977 -12.557 20.268 hybrid contribution -0.603 0.693 0.620 1.108 sum -15.714 -4.284 -11.937 20.193 Atomic orbital electron populations 1.23254 0.76642 1.03596 1.02491 1.86550 1.23202 1.33650 1.84085 1.23628 0.91815 0.81240 0.71679 1.90648 1.67033 1.36328 1.45002 1.21516 0.86151 1.02934 0.96887 0.86290 1.23294 0.90719 0.93694 1.00433 1.65101 1.24100 1.21120 1.10859 1.22036 0.96545 0.85053 0.99932 0.90108 1.22531 1.00495 1.00894 1.00665 1.21672 1.01016 0.99855 0.91234 1.19016 0.90955 0.96209 0.94679 1.21379 1.13196 1.23685 0.97412 0.93068 1.24988 0.96403 0.95299 0.97667 1.69990 1.19041 1.27926 1.36388 0.86643 0.78036 0.78114 0.85826 1.19896 1.21137 1.21175 1.22352 0.96209 0.95873 0.91417 1.21565 0.99769 1.01483 0.89454 1.22979 1.01546 0.92959 1.01717 1.23011 0.96152 1.02621 0.99027 0.88143 0.91828 0.92092 0.88781 0.91119 0.92165 0.93176 0.92169 0.93427 0.93193 0.97214 0.94928 0.93301 0.92958 0.89571 0.87927 0.88129 0.89421 0.88212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.36 16 2 O -0.36 -4.23 10.57 -39.27 -0.41 -4.64 16 3 C 0.47 6.44 5.46 36.01 0.20 6.64 16 4 O -0.50 -7.92 15.63 -18.75 -0.29 -8.21 16 5 C -0.06 -0.75 3.44 -90.15 -0.31 -1.06 16 6 H 0.12 1.58 8.14 -51.93 -0.42 1.16 16 7 C 0.05 0.73 4.88 -1.78 -0.01 0.72 16 8 N -0.49 -8.14 4.71 -222.57 -1.05 -9.19 16 9 C 0.07 1.25 2.29 -67.71 -0.15 1.09 16 10 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 11 C -0.19 -2.72 8.21 37.16 0.31 -2.42 16 12 C -0.10 -2.08 4.62 -26.73 -0.12 -2.20 16 13 C 0.03 0.74 4.86 -27.88 -0.14 0.61 16 14 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 15 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -27.33 13.29 55.43 0.74 -26.59 16 18 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 19 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 C 0.07 0.95 6.21 -2.97 -0.02 0.93 16 23 C -0.12 -1.50 2.39 -154.52 -0.37 -1.87 16 24 C -0.16 -1.55 10.29 -27.02 -0.28 -1.83 16 25 C -0.17 -1.81 9.68 -27.01 -0.26 -2.07 16 26 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 28 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 29 H 0.09 1.59 7.65 -51.93 -0.40 1.20 16 30 H 0.07 1.13 4.58 -51.93 -0.24 0.89 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.67 6.21 -51.93 -0.32 0.35 16 33 H 0.06 0.90 6.40 -51.93 -0.33 0.57 16 34 H 0.05 0.99 7.05 -51.93 -0.37 0.62 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 37 H 0.03 0.91 7.75 -51.93 -0.40 0.51 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.05 0.68 5.96 -51.93 -0.31 0.37 16 40 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.09 0.97 6.95 -51.93 -0.36 0.61 16 44 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 348.77 15.07 5.26 5.26 Total: -1.00 -32.20 348.77 -8.63 -40.82 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -7.34 Total: -0.68 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -0.50 Total: -13.79 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: -0.31 Total: -35.78 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -0.71 Total: -12.86 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.20 -8.63 -40.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506361.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.279 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds