Wall clock time and date at job start Tue Mar 31 2020 05:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34232 * 116.99799 * 2 1 4 4 O 1.20831 * 120.00102 * 0.02562 * 3 2 1 5 5 C 1.50692 * 119.99868 * 179.97438 * 3 2 1 6 6 H 1.09003 * 110.67840 * 28.46908 * 5 3 2 7 7 C 1.55090 * 110.76443 * 151.71864 * 5 3 2 8 8 N 1.48798 * 103.24243 * 154.99508 * 7 5 3 9 9 C 1.46911 * 111.04816 * 200.78062 * 8 7 5 10 10 H 1.08997 * 109.47253 * 169.36137 * 9 8 7 11 11 C 1.53004 * 109.46759 * 49.35950 * 9 8 7 12 12 C 1.53001 * 109.46671 * 289.36432 * 9 8 7 13 13 C 1.53001 * 109.46745 * 294.99649 * 12 9 8 14 14 C 1.50705 * 109.46668 * 180.02562 * 13 12 9 15 15 H 1.07997 * 120.00475 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99870 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00130 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00337 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46925 * 59.99152 * 18 16 14 20 20 H 1.48496 * 109.47473 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46739 * 299.99810 * 18 16 14 22 22 C 1.48098 * 106.00078 * 321.42701 * 8 7 5 23 23 C 1.53373 * 106.74968 * 25.06159 * 22 8 7 24 24 C 1.52291 * 121.62688 * 142.50087 * 23 22 8 25 25 C 1.52314 * 121.58411 * 214.86098 * 23 22 8 26 26 H 1.09002 * 109.47179 * 60.00151 * 1 2 3 27 27 H 1.08999 * 109.47468 * 300.00015 * 1 2 3 28 28 H 1.08996 * 109.47022 * 179.97438 * 1 2 3 29 29 H 1.08998 * 110.64974 * 273.61593 * 7 5 3 30 30 H 1.09007 * 110.64570 * 36.68965 * 7 5 3 31 31 H 1.09000 * 109.47413 * 292.35657 * 11 9 8 32 32 H 1.09000 * 109.46905 * 52.36230 * 11 9 8 33 33 H 1.09005 * 109.46565 * 172.35608 * 11 9 8 34 34 H 1.08993 * 109.47323 * 54.99898 * 12 9 8 35 35 H 1.09001 * 109.46697 * 174.99923 * 12 9 8 36 36 H 1.08996 * 109.47488 * 299.99680 * 13 12 9 37 37 H 1.09001 * 109.47299 * 60.00643 * 13 12 9 38 38 H 0.97002 * 120.00115 * 180.02562 * 17 16 14 39 39 H 1.09003 * 110.00533 * 265.73504 * 22 8 7 40 40 H 1.09001 * 110.03804 * 144.40783 * 22 8 7 41 41 H 1.09002 * 117.51840 * 218.37804 * 24 23 22 42 42 H 1.08998 * 117.51769 * 3.50433 * 24 23 22 43 43 H 1.08997 * 117.52184 * 356.43221 * 25 23 22 44 44 H 1.09006 * 117.51099 * 141.56396 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9978 0.3997 -0.4852 7 6 4.0488 2.5789 -0.6866 8 7 5.3865 2.8103 -0.0774 9 6 5.7929 4.2154 -0.2149 10 1 6.6762 4.3996 0.3965 11 6 4.6527 5.1238 0.2495 12 6 6.1163 4.5116 -1.6807 13 6 7.3362 3.6936 -2.1091 14 6 7.6551 3.9858 -3.5528 15 1 7.0482 4.6847 -4.1091 16 6 8.7211 3.3602 -4.1636 17 7 9.4600 2.5087 -3.4863 18 14 9.1161 3.7218 -5.9532 19 1 9.4097 5.1688 -6.1126 20 1 10.3002 2.9280 -6.3691 21 1 7.9523 3.3567 -6.8004 22 6 5.2566 2.4325 1.3486 23 6 4.1045 1.4237 1.4355 24 6 4.1532 0.2360 2.3873 25 6 3.1691 1.3825 2.6368 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 4.1328 2.4371 -1.7640 30 1 3.3759 3.4055 -0.4580 31 1 3.8156 5.0394 -0.4435 32 1 4.3309 4.8222 1.2463 33 1 4.9993 6.1569 0.2766 34 1 5.2623 4.2433 -2.3026 35 1 6.3316 5.5737 -1.7977 36 1 8.1902 3.9619 -1.4873 37 1 7.1209 2.6315 -1.9921 38 1 10.2102 2.0688 -3.9159 39 1 5.0269 3.3134 1.9483 40 1 6.1811 1.9739 1.6992 41 1 3.7446 -0.7104 2.0331 42 1 5.0140 0.1577 3.0514 43 1 3.3827 2.0584 3.4649 44 1 2.1132 1.1902 2.4464 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172506362.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:24 Heat of formation + Delta-G solvation = -58.102571 kcal Electronic energy + Delta-G solvation = -23065.214090 eV Core-core repulsion = 19790.453274 eV Total energy + Delta-G solvation = -3274.760815 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.07312 -39.31097 -36.74086 -36.52738 -33.50127 -32.17080 -30.38626 -28.93510 -27.76935 -26.33678 -25.02267 -23.53089 -22.68394 -21.37020 -20.72807 -19.54669 -18.71348 -17.69947 -16.81391 -16.61331 -16.08218 -15.37934 -15.23660 -14.81083 -14.46463 -14.20077 -13.79095 -13.39376 -13.20492 -13.02382 -12.61201 -12.42434 -12.27262 -12.01888 -11.83680 -11.59768 -11.48061 -11.27974 -11.23089 -10.97751 -10.89904 -10.78285 -10.56187 -10.46943 -10.43635 -10.12739 -9.80565 -9.61023 -9.18020 -8.88198 -8.21793 -7.89540 -5.86464 -3.87816 2.06770 2.53420 3.39979 3.44205 3.46803 3.59321 4.17711 4.24254 4.55567 4.58642 4.64534 4.74027 4.88923 4.94680 4.97148 5.24565 5.29403 5.34706 5.46381 5.48841 5.49873 5.53042 5.59812 5.65744 5.73164 5.77092 5.93061 5.96433 6.05629 6.08777 6.17435 6.24923 6.33589 6.44366 6.66771 6.83902 7.23151 7.30442 7.47743 7.64209 7.86608 8.08913 8.24048 8.59035 9.20871 9.74763 11.24453 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019953 B = 0.004132 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.944760 B = 6774.638565 C = 7146.436103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.474 3.526 4 O -0.503 6.503 5 C -0.055 4.055 6 H 0.119 0.881 7 C 0.046 3.954 8 N -0.490 5.490 9 C 0.073 3.927 10 H 0.081 0.919 11 C -0.187 4.187 12 C -0.100 4.100 13 C 0.029 3.971 14 C -0.520 4.520 15 H 0.050 0.950 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.886 3.114 19 H -0.279 1.279 20 H -0.288 1.288 21 H -0.278 1.278 22 C 0.070 3.930 23 C -0.122 4.122 24 C -0.155 4.155 25 C -0.171 4.171 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.047 0.953 35 H 0.049 0.951 36 H 0.009 0.991 37 H 0.032 0.968 38 H 0.258 0.742 39 H 0.052 0.948 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.599 -4.636 12.725 20.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.316 3.684 4 O -0.390 6.390 5 C -0.075 4.075 6 H 0.137 0.863 7 C -0.081 4.081 8 N -0.213 5.213 9 C -0.035 4.035 10 H 0.099 0.901 11 C -0.245 4.245 12 C -0.138 4.138 13 C -0.008 4.008 14 C -0.558 4.558 15 H 0.068 0.932 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.715 3.285 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.204 1.204 22 C -0.058 4.058 23 C -0.123 4.123 24 C -0.192 4.192 25 C -0.208 4.208 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.119 0.881 29 H 0.112 0.888 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.028 0.972 37 H 0.051 0.949 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.104 0.896 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.252 -4.749 12.435 20.244 hybrid contribution -0.613 0.690 -0.641 1.123 sum -15.865 -4.059 11.795 20.182 Atomic orbital electron populations 1.23255 0.76642 1.03599 1.02490 1.86553 1.23206 1.33652 1.84074 1.23639 0.91827 0.81241 0.71679 1.90650 1.67029 1.36330 1.45009 1.21516 0.86156 1.03000 0.96814 0.86315 1.23338 0.90779 0.93852 1.00174 1.65102 1.24373 1.21621 1.10164 1.22036 0.96432 0.85029 1.00050 0.90125 1.22528 1.00423 1.00873 1.00721 1.21668 1.00955 0.99948 0.91182 1.19006 0.90816 0.96151 0.94806 1.21306 1.12693 1.24650 0.97184 0.93181 1.24982 0.96430 0.95329 0.97562 1.69968 1.18587 1.28508 1.36300 0.86757 0.77686 0.78195 0.85900 1.20431 1.21394 1.20398 1.22343 0.96233 0.95912 0.91270 1.21563 0.99803 1.01604 0.89282 1.22981 1.01540 0.93140 1.01555 1.23012 0.96120 1.02497 0.99169 0.91835 0.92083 0.88143 0.88778 0.91087 0.92164 0.93203 0.92173 0.93441 0.93206 0.97228 0.94936 0.93185 0.93000 0.89558 0.88143 0.87914 0.88204 0.89424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.36 16 2 O -0.36 -4.23 10.57 -39.26 -0.41 -4.65 16 3 C 0.47 6.43 5.44 36.00 0.20 6.63 16 4 O -0.50 -7.90 15.64 -18.75 -0.29 -8.19 16 5 C -0.06 -0.75 3.43 -90.16 -0.31 -1.06 16 6 H 0.12 1.58 8.14 -51.93 -0.42 1.15 16 7 C 0.05 0.72 4.93 -1.67 -0.01 0.72 16 8 N -0.49 -8.16 4.69 -222.38 -1.04 -9.20 16 9 C 0.07 1.25 2.28 -67.70 -0.15 1.10 16 10 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 11 C -0.19 -2.72 8.19 37.16 0.30 -2.42 16 12 C -0.10 -2.07 4.63 -26.73 -0.12 -2.20 16 13 C 0.03 0.77 4.86 -27.88 -0.14 0.63 16 14 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 15 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -27.34 13.29 55.43 0.74 -26.61 16 18 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 22 C 0.07 0.97 6.21 -2.97 -0.02 0.95 16 23 C -0.12 -1.50 2.39 -154.52 -0.37 -1.87 16 24 C -0.16 -1.56 10.29 -27.02 -0.28 -1.84 16 25 C -0.17 -1.81 9.69 -27.01 -0.26 -2.07 16 26 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 27 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 28 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 1.59 7.68 -51.93 -0.40 1.19 16 30 H 0.07 1.14 4.56 -51.92 -0.24 0.90 16 31 H 0.06 0.90 6.39 -51.93 -0.33 0.57 16 32 H 0.05 0.67 6.28 -51.93 -0.33 0.34 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.99 7.10 -51.93 -0.37 0.62 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.03 0.91 7.75 -51.93 -0.40 0.51 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.05 0.67 6.03 -51.93 -0.31 0.36 16 40 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.09 0.97 6.95 -51.93 -0.36 0.61 16 LS Contribution 348.94 15.07 5.26 5.26 Total: -1.00 -32.15 348.94 -8.63 -40.78 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -7.35 Total: -0.64 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -0.50 Total: -13.81 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: -0.31 Total: -35.81 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -0.71 Total: -12.84 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.15 -8.63 -40.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506362.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.320 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds