Wall clock time and date at job start Tue Mar 31 2020 05:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09005 * 109.46519 * 2 1 4 4 C 1.52992 * 109.47307 * 239.99741 * 2 1 3 5 5 C 1.53004 * 109.47249 * 63.07492 * 4 2 1 6 6 C 1.50700 * 109.47243 * 174.80244 * 5 4 2 7 7 H 1.07999 * 119.99808 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99889 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00106 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99914 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46969 * 89.99648 * 10 8 6 12 12 H 1.48502 * 109.47122 * 209.99966 * 10 8 6 13 13 H 1.48504 * 109.46949 * 329.99665 * 10 8 6 14 14 N 1.46900 * 109.47078 * 119.99212 * 2 1 3 15 15 C 1.46846 * 110.99898 * 181.77231 * 14 2 1 16 16 C 1.53102 * 109.48353 * 186.19335 * 15 14 2 17 17 C 1.52784 * 109.28387 * 301.42105 * 16 15 14 18 18 C 1.53966 * 109.77531 * 177.69504 * 17 16 15 19 19 C 1.54617 * 102.97618 * 120.46037 * 18 17 16 20 20 C 1.51808 * 103.53440 * 16.43647 * 19 18 17 21 21 O 1.20825 * 126.40355 * 149.62057 * 20 19 18 22 22 O 1.34605 * 107.18808 * 329.58734 * 20 19 18 23 23 C 1.52790 * 110.03185 * 56.79673 * 17 16 15 24 24 C 1.46848 * 111.00448 * 306.10043 * 14 2 1 25 25 H 1.08996 * 109.47042 * 300.00575 * 1 2 3 26 26 H 1.09002 * 109.46669 * 60.00304 * 1 2 3 27 27 H 1.08996 * 109.46272 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47290 * 183.07087 * 4 2 1 29 29 H 1.08996 * 109.47542 * 303.07317 * 4 2 1 30 30 H 1.09004 * 109.46736 * 294.79438 * 5 4 2 31 31 H 1.08993 * 109.47346 * 54.79614 * 5 4 2 32 32 H 0.96994 * 119.99782 * 179.97438 * 9 8 6 33 33 H 1.09002 * 109.46469 * 66.19737 * 15 14 2 34 34 H 1.08996 * 109.47264 * 306.20146 * 15 14 2 35 35 H 1.08998 * 109.50587 * 181.47176 * 16 15 14 36 36 H 1.09005 * 109.50146 * 61.36390 * 16 15 14 37 37 H 1.08999 * 110.71329 * 238.82904 * 18 17 16 38 38 H 1.08994 * 110.71526 * 1.91378 * 18 17 16 39 39 H 1.09002 * 110.61033 * 134.95228 * 19 18 17 40 40 H 1.08999 * 110.60791 * 257.76982 * 19 18 17 41 41 H 1.09001 * 109.50565 * 63.13117 * 23 17 16 42 42 H 1.08995 * 109.50665 * 183.21448 * 23 17 16 43 43 H 1.08999 * 109.47142 * 53.79351 * 24 14 2 44 44 H 1.09002 * 109.46934 * 293.80060 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5943 0.0432 -2.4973 6 6 2.2022 -0.5937 -3.7203 7 1 2.8428 -1.4571 -3.6176 8 6 1.9405 -0.0741 -4.9704 9 7 1.1600 0.9770 -5.0954 10 14 2.6946 -0.8632 -6.4864 11 1 1.7810 -1.9130 -7.0044 12 1 2.9029 0.1714 -7.5312 13 1 3.9996 -1.4751 -6.1287 14 7 2.0197 -0.6923 1.1995 15 6 3.4871 -0.6753 1.2548 16 6 3.9638 -1.5341 2.4292 17 6 3.3677 -0.9904 3.7266 18 6 3.7934 -1.8805 4.9086 19 6 4.5514 -0.8961 5.8291 20 6 4.1268 0.4682 5.3164 21 8 4.0263 1.4801 5.9691 22 8 3.8839 0.3401 3.9987 23 6 1.8434 -0.9565 3.6283 24 6 1.4336 -0.1156 2.4162 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 3.1287 -0.7692 -1.2220 29 1 1.6325 -1.7318 -1.2771 30 1 0.5074 0.0118 -2.5736 31 1 1.9237 1.0797 -2.4255 32 1 0.9762 1.3427 -5.9748 33 1 3.8336 0.3493 1.3899 34 1 3.8904 -1.0756 0.3247 35 1 5.0518 -1.5007 2.4864 36 1 3.6382 -2.5640 2.2826 37 1 2.9205 -2.2894 5.4173 38 1 4.4514 -2.6811 4.5710 39 1 4.2455 -1.0283 6.8669 40 1 5.6286 -1.0284 5.7280 41 1 1.4634 -1.9715 3.5122 42 1 1.4300 -0.5146 4.5349 43 1 0.3472 -0.1098 2.3286 44 1 1.7933 0.9054 2.5440 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172507098.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:02 Heat of formation + Delta-G solvation = -92.728105 kcal Electronic energy + Delta-G solvation = -22866.276265 eV Core-core repulsion = 19590.013974 eV Total energy + Delta-G solvation = -3276.262291 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.56136 -38.96996 -37.55222 -34.84928 -33.44492 -32.50180 -31.24255 -30.50056 -28.41690 -25.80974 -25.10775 -23.14126 -22.42897 -22.05629 -21.27124 -19.64191 -19.18172 -17.23803 -16.82997 -16.56573 -16.20349 -15.29535 -14.94964 -14.78554 -14.47537 -14.23966 -14.09416 -13.82269 -13.65652 -13.03950 -12.76925 -12.66615 -12.34529 -12.02680 -11.97668 -11.88259 -11.70383 -11.47397 -11.22463 -11.12311 -11.02550 -10.74978 -10.59009 -10.48282 -10.45783 -10.32023 -9.94812 -9.53940 -9.27341 -8.99062 -8.31144 -8.01278 -5.97406 -3.99239 1.66489 3.06739 3.33251 3.39470 3.42669 3.66415 3.93221 4.09622 4.19858 4.34135 4.48479 4.60733 4.71446 5.06345 5.13250 5.23033 5.30240 5.32856 5.38350 5.41093 5.46137 5.54591 5.55919 5.58211 5.74390 5.90424 5.92873 5.96944 6.08942 6.13741 6.35174 6.44193 6.60757 6.66385 6.75558 6.79376 7.16032 7.19776 7.40763 7.47001 7.71935 7.87967 8.03409 8.46839 9.08088 9.64513 11.13963 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032557 B = 0.003297 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.823273 B = 8491.134974 C = 8738.206892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.082 3.918 3 H 0.036 0.964 4 C -0.101 4.101 5 C 0.022 3.978 6 C -0.518 4.518 7 H 0.054 0.946 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.891 3.109 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.274 1.274 14 N -0.533 5.533 15 C 0.049 3.951 16 C -0.106 4.106 17 C 0.111 3.889 18 C -0.145 4.145 19 C -0.188 4.188 20 C 0.484 3.516 21 O -0.453 6.453 22 O -0.341 6.341 23 C -0.122 4.122 24 C 0.049 3.951 25 H 0.043 0.957 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.020 0.980 31 H 0.012 0.988 32 H 0.260 0.740 33 H 0.038 0.962 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.084 0.916 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.034 -7.243 21.609 23.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.025 4.025 3 H 0.054 0.946 4 C -0.138 4.138 5 C -0.015 4.015 6 C -0.557 4.557 7 H 0.072 0.928 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.719 3.281 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.199 1.199 14 N -0.259 5.259 15 C -0.078 4.078 16 C -0.143 4.143 17 C 0.074 3.926 18 C -0.183 4.183 19 C -0.226 4.226 20 C 0.324 3.676 21 O -0.336 6.336 22 O -0.259 6.259 23 C -0.160 4.160 24 C -0.079 4.079 25 H 0.062 0.938 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.038 0.962 31 H 0.031 0.969 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.124 0.876 40 H 0.132 0.868 41 H 0.112 0.888 42 H 0.087 0.913 43 H 0.102 0.898 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.780 -6.965 21.588 22.996 hybrid contribution 0.714 0.454 -0.760 1.138 sum 4.495 -6.511 20.828 22.280 Atomic orbital electron populations 1.21938 0.94754 1.02110 1.01368 1.21771 0.95409 0.95595 0.89739 0.94638 1.21719 0.99384 0.99424 0.93323 1.19131 0.96780 0.95114 0.90515 1.21263 1.29308 1.13628 0.91462 0.92761 1.25022 0.95336 0.95047 0.99085 1.69963 1.37226 1.22917 1.23450 0.86620 0.79644 0.79006 0.82876 1.20690 1.21293 1.19910 1.62045 1.06351 1.55524 1.01950 1.22117 0.88470 0.98686 0.98571 1.21787 1.00359 1.00568 0.91616 1.22775 0.94815 0.78415 0.96561 1.22979 1.01795 0.98273 0.95244 1.23074 1.03697 0.93442 1.02386 1.23381 0.72908 0.90099 0.81180 1.90707 1.47780 1.36124 1.58949 1.87160 1.77212 1.36146 1.25381 1.22031 0.92356 1.02762 0.98803 1.22104 1.00421 0.95999 0.89340 0.93793 0.91061 0.92208 0.93306 0.92680 0.96218 0.96937 0.93067 0.94402 0.89241 0.90542 0.88754 0.88978 0.88387 0.87562 0.86807 0.88797 0.91314 0.89826 0.94562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.49 37.16 0.32 -2.03 16 2 C 0.08 1.42 2.17 -67.71 -0.15 1.28 16 3 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 4 C -0.10 -2.06 4.56 -26.73 -0.12 -2.18 16 5 C 0.02 0.57 4.55 -27.88 -0.13 0.44 16 6 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 7 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 10 Si 0.89 21.71 29.54 -169.99 -5.02 16.68 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 14 N -0.53 -7.70 4.51 -226.61 -1.02 -8.72 16 15 C 0.05 0.67 5.16 -3.80 -0.02 0.65 16 16 C -0.11 -1.03 4.90 -26.79 -0.13 -1.16 16 17 C 0.11 1.04 0.77 -90.34 -0.07 0.97 16 18 C -0.15 -0.86 6.37 -25.38 -0.16 -1.02 16 19 C -0.19 -1.24 6.99 -26.49 -0.19 -1.43 16 20 C 0.48 5.60 8.57 36.55 0.31 5.91 16 21 O -0.45 -6.84 18.00 -18.28 -0.33 -7.17 16 22 O -0.34 -4.21 9.65 -39.81 -0.38 -4.60 16 23 C -0.12 -1.18 4.90 -26.79 -0.13 -1.31 16 24 C 0.05 0.63 5.00 -3.80 -0.02 0.61 16 25 H 0.04 0.61 6.19 -51.93 -0.32 0.29 16 26 H 0.07 1.29 6.63 -51.93 -0.34 0.94 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.99 6.16 -51.93 -0.32 0.67 16 29 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.02 0.53 6.78 -51.93 -0.35 0.17 16 31 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.04 0.57 7.88 -51.93 -0.41 0.16 16 34 H 0.09 1.29 5.99 -51.93 -0.31 0.98 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.09 0.43 7.70 -51.93 -0.40 0.03 16 38 H 0.10 0.42 7.70 -51.93 -0.40 0.02 16 39 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.08 1.02 5.85 -51.93 -0.30 0.71 16 44 H 0.04 0.52 7.88 -51.93 -0.41 0.11 16 LS Contribution 339.54 15.07 5.12 5.12 Total: -1.00 -32.47 339.54 -9.14 -41.61 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -7.34 Total: -3.89 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -0.90 Total: -12.75 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: -0.29 Total: -35.01 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -0.71 Total: -11.77 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.47 -9.14 -41.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507098.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.122 kcal (2) G-P(sol) polarization free energy of solvation -32.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds