Wall clock time and date at job start Tue Mar 31 2020 05:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47229 * 2 1 4 4 C 1.53002 * 109.47270 * 120.00105 * 2 1 3 5 5 C 1.52991 * 109.47265 * 183.99621 * 4 2 1 6 6 C 1.50706 * 109.47349 * 179.97438 * 5 4 2 7 7 H 1.08005 * 119.99411 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00348 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99841 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00199 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46916 * 89.99717 * 10 8 6 12 12 H 1.48496 * 109.47110 * 209.99988 * 10 8 6 13 13 H 1.48505 * 109.46952 * 330.00108 * 10 8 6 14 14 N 1.46902 * 109.47192 * 239.99868 * 2 1 3 15 15 C 1.46833 * 111.00450 * 306.66714 * 14 2 1 16 16 C 1.53105 * 109.48709 * 186.18978 * 15 14 2 17 17 C 1.52793 * 109.27558 * 301.41212 * 16 15 14 18 18 C 1.53958 * 109.76158 * 177.71373 * 17 16 15 19 19 C 1.54612 * 102.98029 * 118.48442 * 18 17 16 20 20 C 1.51820 * 103.53126 * 343.55284 * 19 18 17 21 21 O 1.20829 * 126.40617 * 210.39923 * 20 19 18 22 22 O 1.34607 * 107.18277 * 30.41795 * 20 19 18 23 23 C 1.52784 * 110.02875 * 56.80629 * 17 16 15 24 24 C 1.46850 * 110.99731 * 70.99482 * 14 2 1 25 25 H 1.08994 * 109.47262 * 299.99615 * 1 2 3 26 26 H 1.08998 * 109.47357 * 60.00213 * 1 2 3 27 27 H 1.08999 * 109.47229 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46847 * 303.99767 * 4 2 1 29 29 H 1.09003 * 109.46661 * 63.99674 * 4 2 1 30 30 H 1.09000 * 109.47663 * 300.00216 * 5 4 2 31 31 H 1.09003 * 109.47238 * 60.00406 * 5 4 2 32 32 H 0.96996 * 119.99734 * 180.02562 * 9 8 6 33 33 H 1.09003 * 109.46848 * 306.19309 * 15 14 2 34 34 H 1.09002 * 109.47040 * 66.18078 * 15 14 2 35 35 H 1.08999 * 109.50388 * 181.47014 * 16 15 14 36 36 H 1.09001 * 109.49849 * 61.34963 * 16 15 14 37 37 H 1.09005 * 110.71435 * 236.85710 * 18 17 16 38 38 H 1.09004 * 110.71636 * 0.11043 * 18 17 16 39 39 H 1.09007 * 110.61144 * 225.04368 * 19 18 17 40 40 H 1.08999 * 110.74817 * 102.13044 * 19 18 17 41 41 H 1.09007 * 109.49842 * 183.25628 * 23 17 16 42 42 H 1.08998 * 109.50717 * 63.14061 * 23 17 16 43 43 H 1.08994 * 109.46755 * 293.81482 * 24 14 2 44 44 H 1.09005 * 109.46382 * 53.80785 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5666 -0.6348 1.3005 6 6 4.0690 -1.3447 2.5313 7 1 3.3692 -1.8113 3.2089 8 6 5.4218 -1.3986 2.7923 9 7 6.2737 -0.8300 1.9674 10 14 6.0443 -2.2779 4.3183 11 1 6.3017 -3.7047 3.9970 12 1 7.3034 -1.6392 4.7785 13 1 5.0227 -2.1889 5.3923 14 7 2.0197 -0.6925 -1.1994 15 6 1.4233 -2.0293 -1.3157 16 6 2.0697 -2.7770 -2.4850 17 6 1.8615 -1.9786 -3.7710 18 6 2.5566 -2.6921 -4.9449 19 6 1.3834 -3.0155 -5.8986 20 6 0.1561 -2.8524 -5.0199 21 8 -0.8873 -3.4522 -5.1270 22 8 0.4477 -1.9144 -4.0996 23 6 2.4320 -0.5704 -3.6109 24 6 1.7741 0.1076 -2.4061 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6193 -0.2504 2.1378 29 1 1.7363 -1.7676 1.2141 30 1 3.9873 -1.1056 0.4120 31 1 3.8703 0.4115 1.3357 32 1 7.2254 -0.8682 2.1508 33 1 1.5917 -2.5837 -0.3924 34 1 0.3519 -1.9350 -1.4925 35 1 1.6091 -3.7595 -2.5879 36 1 3.1372 -2.8927 -2.2973 37 1 3.2748 -2.0294 -5.4280 38 1 3.0422 -3.6075 -4.6067 39 1 1.4588 -4.0389 -6.2664 40 1 1.3564 -2.3113 -6.7301 41 1 2.2278 0.0094 -4.5111 42 1 3.5087 -0.6298 -3.4522 43 1 0.7006 0.1885 -2.5761 44 1 2.1971 1.1035 -2.2739 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172507099.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:04 Heat of formation + Delta-G solvation = -92.305459 kcal Electronic energy + Delta-G solvation = -23312.220618 eV Core-core repulsion = 20035.976654 eV Total energy + Delta-G solvation = -3276.243964 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.45983 -38.97822 -37.52960 -34.62185 -33.27460 -32.44859 -30.95631 -30.21831 -28.73626 -25.61411 -24.92200 -23.45353 -22.31941 -21.98547 -21.08079 -19.83044 -18.81210 -17.12126 -16.62349 -16.21945 -16.11004 -15.60297 -14.94817 -14.61836 -14.40348 -14.17678 -13.92426 -13.62871 -13.19285 -13.01592 -12.78915 -12.59589 -12.28576 -12.15754 -12.02451 -11.62493 -11.52454 -11.40533 -11.31782 -11.25277 -10.92104 -10.85937 -10.45090 -10.42224 -10.28715 -10.19854 -9.94380 -9.57382 -9.19251 -8.89044 -8.24433 -7.74799 -5.90004 -3.91005 1.74811 3.17426 3.35815 3.42198 3.45629 3.77065 4.06491 4.23847 4.34963 4.46742 4.52914 4.74664 4.84667 5.21168 5.24127 5.34718 5.41313 5.45584 5.46101 5.49324 5.53034 5.62324 5.66967 5.68906 5.77821 5.79378 5.99115 6.04809 6.13429 6.24315 6.28506 6.34985 6.44899 6.68663 6.71394 6.89001 7.27833 7.29316 7.53970 7.58154 7.84388 8.06537 8.21113 8.56418 9.17983 9.71765 11.20909 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023359 B = 0.004103 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.405797 B = 6822.345943 C = 7258.805281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.083 3.917 3 H 0.077 0.923 4 C -0.102 4.102 5 C 0.031 3.969 6 C -0.519 4.519 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.885 3.115 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.275 1.275 14 N -0.517 5.517 15 C 0.054 3.946 16 C -0.124 4.124 17 C 0.113 3.887 18 C -0.146 4.146 19 C -0.187 4.187 20 C 0.485 3.515 21 O -0.456 6.456 22 O -0.343 6.343 23 C -0.106 4.106 24 C 0.054 3.946 25 H 0.057 0.943 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.032 0.968 31 H 0.009 0.991 32 H 0.258 0.742 33 H 0.087 0.913 34 H 0.037 0.963 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.073 0.927 42 H 0.097 0.903 43 H 0.036 0.964 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.873 -1.054 -15.761 17.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.025 4.025 3 H 0.095 0.905 4 C -0.140 4.140 5 C -0.006 4.006 6 C -0.557 4.557 7 H 0.068 0.932 8 C -0.143 4.143 9 N -0.534 5.534 10 Si 0.714 3.286 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.200 1.200 14 N -0.241 5.241 15 C -0.074 4.074 16 C -0.162 4.162 17 C 0.076 3.924 18 C -0.183 4.183 19 C -0.226 4.226 20 C 0.325 3.675 21 O -0.338 6.338 22 O -0.261 6.261 23 C -0.144 4.144 24 C -0.074 4.074 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.027 0.973 32 H 0.067 0.933 33 H 0.105 0.895 34 H 0.055 0.945 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.124 0.876 40 H 0.131 0.869 41 H 0.092 0.908 42 H 0.116 0.884 43 H 0.054 0.946 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.809 -1.210 -15.673 17.553 hybrid contribution -0.376 -0.418 0.666 0.872 sum -8.186 -1.629 -15.007 17.172 Atomic orbital electron populations 1.22498 0.98782 1.01756 1.01275 1.21844 0.91137 0.98454 0.91040 0.90475 1.21724 1.00793 0.98274 0.93221 1.18988 0.88019 0.96702 0.96928 1.21358 0.91696 1.34406 1.08256 0.93170 1.24976 0.97134 0.95773 0.96413 1.69975 1.02006 1.44694 1.36746 0.86707 0.78286 0.79824 0.83821 1.20822 1.21356 1.20043 1.62059 1.58342 1.02048 1.01656 1.22057 0.96053 0.90762 0.98495 1.22058 1.03715 0.97619 0.92772 1.22783 0.76056 0.98270 0.95262 1.22988 0.97673 1.02663 0.95009 1.23076 0.93905 1.05727 0.99887 1.23392 0.88406 0.75343 0.80356 1.90699 1.29591 1.41943 1.71595 1.87126 1.29488 1.51287 1.58192 1.21779 1.01556 0.92412 0.98626 1.22038 0.98360 0.97172 0.89879 0.92385 0.93460 0.92611 0.93343 0.93415 0.94981 0.97283 0.93270 0.89490 0.94499 0.91372 0.88276 0.88404 0.88778 0.87595 0.86941 0.90814 0.88413 0.94573 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.67 8.44 37.16 0.31 -2.36 16 2 C 0.08 1.40 2.31 -67.71 -0.16 1.24 16 3 H 0.08 1.33 7.96 -51.93 -0.41 0.91 16 4 C -0.10 -2.08 4.55 -26.73 -0.12 -2.20 16 5 C 0.03 0.78 4.85 -27.88 -0.14 0.65 16 6 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 7 H 0.05 1.39 7.74 -52.48 -0.41 0.99 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 10 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 N -0.52 -8.18 3.99 -226.61 -0.91 -9.09 16 15 C 0.05 0.81 4.42 -3.81 -0.02 0.79 16 16 C -0.12 -1.54 4.90 -26.78 -0.13 -1.68 16 17 C 0.11 1.22 0.77 -90.34 -0.07 1.15 16 18 C -0.15 -1.11 6.37 -25.38 -0.16 -1.27 16 19 C -0.19 -1.44 6.99 -26.48 -0.19 -1.63 16 20 C 0.48 5.97 8.58 36.56 0.31 6.28 16 21 O -0.46 -7.14 18.00 -18.28 -0.33 -7.47 16 22 O -0.34 -4.42 9.65 -39.82 -0.38 -4.81 16 23 C -0.11 -1.14 4.90 -26.79 -0.13 -1.27 16 24 C 0.05 0.71 5.04 -3.80 -0.02 0.69 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.64 6.86 -51.93 -0.36 0.29 16 27 H 0.05 0.81 6.46 -51.93 -0.34 0.48 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.05 0.96 6.29 -51.93 -0.33 0.64 16 30 H 0.03 0.87 7.72 -51.93 -0.40 0.47 16 31 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.09 1.43 6.17 -51.93 -0.32 1.11 16 34 H 0.04 0.56 6.34 -51.93 -0.33 0.23 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.10 0.58 7.70 -51.93 -0.40 0.18 16 38 H 0.09 0.65 7.70 -51.93 -0.40 0.25 16 39 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.04 0.49 6.67 -51.93 -0.35 0.15 16 44 H 0.08 0.99 8.00 -51.93 -0.42 0.57 16 LS Contribution 339.66 15.07 5.12 5.12 Total: -1.00 -32.27 339.66 -9.09 -41.36 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -7.39 Total: -2.67 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -0.91 Total: -13.05 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: -0.17 Total: -35.17 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: -0.71 Total: -12.28 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.27 -9.09 -41.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507099.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.948 kcal (2) G-P(sol) polarization free energy of solvation -32.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds