Wall clock time and date at job start Tue Mar 31 2020 06:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 117.00075 * 2 1 4 4 O 1.20827 * 119.99643 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00435 * 180.02562 * 3 2 1 6 6 H 1.09006 * 108.87020 * 58.60106 * 5 3 2 7 7 C 1.54242 * 108.89075 * 300.00191 * 5 3 2 8 8 C 1.50473 * 108.51266 * 159.35072 * 7 5 3 9 9 C 1.54067 * 112.50247 * 94.15356 * 8 7 5 10 10 C 1.54067 * 112.81221 * 318.28332 * 9 8 7 11 11 H 1.08993 * 108.88137 * 78.95983 * 10 9 8 12 12 N 1.46906 * 108.87483 * 197.50237 * 10 9 8 13 13 C 1.47475 * 111.00209 * 286.29294 * 12 10 9 14 14 C 1.53514 * 87.93456 * 221.29754 * 13 12 10 15 15 C 1.50694 * 114.17073 * 139.67086 * 14 13 12 16 16 H 1.08000 * 120.00058 * 266.15556 * 15 14 13 17 17 C 1.37874 * 120.00201 * 86.16489 * 15 14 13 18 18 N 1.31520 * 119.99858 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00134 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47267 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47549 * 119.99346 * 19 17 15 22 22 H 1.48500 * 109.46771 * 239.99324 * 19 17 15 23 23 C 1.47483 * 110.99922 * 190.31897 * 12 10 9 24 24 C 1.50475 * 112.49927 * 318.28072 * 10 9 8 25 25 C 1.45537 * 108.81952 * 177.15868 * 5 3 2 26 26 H 1.09005 * 109.47079 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46805 * 299.99496 * 1 2 3 28 28 H 1.08998 * 109.47132 * 60.00085 * 1 2 3 29 29 H 1.08993 * 109.63075 * 39.64104 * 7 5 3 30 30 H 1.08999 * 109.63086 * 279.05440 * 7 5 3 31 31 H 1.08996 * 108.88228 * 333.37106 * 8 7 5 32 32 H 1.09006 * 108.87329 * 214.92823 * 8 7 5 33 33 H 1.09000 * 108.81537 * 197.42100 * 9 8 7 34 34 H 1.08996 * 108.72710 * 79.07589 * 9 8 7 35 35 H 1.09004 * 113.47418 * 336.06565 * 13 12 10 36 36 H 1.08999 * 113.47806 * 106.52708 * 13 12 10 37 37 H 1.08997 * 114.16673 * 272.37768 * 14 13 12 38 38 H 0.97000 * 119.99567 * 180.02562 * 18 17 15 39 39 H 1.09000 * 113.47540 * 253.47216 * 23 12 10 40 40 H 1.08999 * 113.47638 * 23.93777 * 23 12 10 41 41 H 1.09004 * 109.62763 * 213.86433 * 24 10 9 42 42 H 1.09001 * 109.62520 * 334.44081 * 24 10 9 43 43 H 1.08996 * 108.89717 * 303.39563 * 25 5 3 44 44 H 1.09009 * 108.89441 * 61.88713 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9462 0.7569 -0.8813 7 6 4.1038 0.5721 1.2629 8 6 5.5430 0.2015 1.0277 9 6 6.5206 1.2697 1.5540 10 6 6.0560 2.7066 1.2491 11 1 5.2881 2.9893 1.9691 12 7 7.2001 3.6167 1.3934 13 6 7.5384 3.8192 2.8145 14 6 7.7529 5.3051 2.4944 15 6 7.2291 6.2454 3.5491 16 1 6.2347 6.6572 3.4596 17 6 8.0193 6.5802 4.6281 18 7 9.2302 6.0785 4.7372 19 14 7.3697 7.7451 5.9359 20 1 5.9901 8.1660 5.5828 21 1 7.3559 7.0553 7.2507 22 1 8.2470 8.9408 6.0134 23 6 6.7634 5.0249 1.3546 24 6 5.4939 2.8476 -0.1396 25 6 3.9630 2.6735 -0.0687 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.5208 -0.3281 1.4571 30 1 4.0343 1.2478 2.1153 31 1 5.7039 0.0731 -0.0426 32 1 5.7502 -0.7439 1.5294 33 1 7.4960 1.1106 1.0943 34 1 6.6181 1.1534 2.6333 35 1 6.7027 3.6367 3.4901 36 1 8.4493 3.3052 3.1215 37 1 8.7614 5.5485 2.1601 38 1 9.7860 6.3137 5.4966 39 1 7.0175 5.5328 0.4242 40 1 5.7209 5.1643 1.6405 41 1 5.7323 3.8360 -0.5325 42 1 5.9200 2.0808 -0.7866 43 1 3.5151 3.1248 -0.9540 44 1 3.5897 3.1899 0.8157 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172782666.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:05 Heat of formation + Delta-G solvation = -65.965371 kcal Electronic energy + Delta-G solvation = -22910.239723 eV Core-core repulsion = 19635.137951 eV Total energy + Delta-G solvation = -3275.101772 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.04237 -39.60316 -37.66188 -36.52207 -33.06209 -32.38784 -31.72569 -28.38425 -27.30281 -25.79640 -24.80405 -24.20707 -22.56209 -21.86165 -20.21788 -19.03105 -18.54006 -17.77250 -17.04020 -16.65816 -16.51220 -15.37049 -14.88538 -14.64883 -14.41257 -14.07765 -13.77673 -13.68589 -13.38967 -13.15727 -12.82778 -12.41021 -12.18495 -12.09374 -11.86922 -11.39607 -11.33006 -11.09200 -11.02920 -11.02218 -10.85285 -10.80731 -10.60440 -10.47105 -10.33893 -10.24652 -9.99817 -9.56062 -9.08198 -8.87180 -8.41158 -7.91640 -6.03792 -4.07750 2.04110 2.52107 3.28800 3.37178 3.41225 4.40714 4.45924 4.46842 4.61961 4.83256 4.85071 4.92220 5.11026 5.14671 5.17563 5.26770 5.28168 5.33208 5.37556 5.47921 5.70560 5.84844 5.88099 5.92436 6.03798 6.07900 6.14378 6.19044 6.20694 6.29614 6.34345 6.38656 6.46839 6.60665 6.68154 6.73351 6.84662 7.17775 7.25681 7.58167 7.75705 7.94390 8.15304 8.40649 8.95825 9.57173 11.05835 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023417 B = 0.003779 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.408629 B = 7408.478853 C = 7927.298184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.460 3.540 4 O -0.506 6.506 5 C -0.066 4.066 6 H 0.106 0.894 7 C -0.110 4.110 8 C -0.113 4.113 9 C -0.108 4.108 10 C 0.051 3.949 11 H 0.041 0.959 12 N -0.483 5.483 13 C 0.007 3.993 14 C 0.040 3.960 15 C -0.515 4.515 16 H 0.057 0.943 17 C 0.066 3.934 18 N -0.887 5.887 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.004 4.004 24 C -0.102 4.102 25 C -0.115 4.115 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.261 0.739 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.176 -14.298 -9.563 21.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.303 3.697 4 O -0.393 6.393 5 C -0.085 4.085 6 H 0.124 0.876 7 C -0.148 4.148 8 C -0.151 4.151 9 C -0.146 4.146 10 C -0.058 4.058 11 H 0.058 0.942 12 N -0.205 5.205 13 C -0.122 4.122 14 C 0.021 3.979 15 C -0.553 4.553 16 H 0.075 0.925 17 C -0.136 4.136 18 N -0.524 5.524 19 Si 0.717 3.283 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.132 4.132 24 C -0.140 4.140 25 C -0.153 4.153 26 H 0.118 0.882 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.771 -14.285 -9.931 21.006 hybrid contribution -1.318 0.830 1.371 2.075 sum -13.089 -13.455 -8.560 20.631 Atomic orbital electron populations 1.23251 0.76665 1.03545 1.02529 1.86513 1.23181 1.33748 1.84166 1.24184 0.92487 0.81141 0.71904 1.90674 1.67242 1.36391 1.44977 1.20124 0.86197 1.00156 1.02072 0.87616 1.21413 0.96997 1.00480 0.95869 1.21288 0.93541 0.98665 1.01587 1.21867 0.98948 0.92861 1.00953 1.21993 0.93649 0.94063 0.96107 0.94153 1.68968 1.27156 1.03651 1.20734 1.23970 0.99311 1.01463 0.87466 1.20093 0.95204 0.91117 0.91439 1.21089 1.00603 1.27466 1.06132 0.92451 1.25013 0.94705 0.95807 0.98099 1.69983 1.08419 1.43857 1.30150 0.86581 0.79125 0.80907 0.81677 1.19728 1.21016 1.20916 1.23959 0.99390 0.89486 1.00395 1.21308 0.92427 1.02886 0.97353 1.20456 0.97220 0.93802 1.03845 0.88187 0.91921 0.92018 0.90700 0.90648 0.91841 0.91753 0.91132 0.92383 0.93139 0.91983 0.91902 0.92975 0.92240 0.92892 0.90525 0.91414 0.91323 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.81 10.14 -39.26 -0.40 -4.20 16 3 C 0.46 5.65 7.17 36.01 0.26 5.90 16 4 O -0.51 -7.69 15.53 -18.75 -0.29 -7.98 16 5 C -0.07 -0.72 2.13 -94.64 -0.20 -0.93 16 6 H 0.11 0.96 7.47 -51.93 -0.39 0.57 16 7 C -0.11 -1.16 4.97 -27.34 -0.14 -1.30 16 8 C -0.11 -1.18 5.31 -27.44 -0.15 -1.33 16 9 C -0.11 -1.50 5.03 -25.62 -0.13 -1.62 16 10 C 0.05 0.82 1.12 -68.41 -0.08 0.74 16 11 H 0.04 0.70 5.98 -51.93 -0.31 0.39 16 12 N -0.48 -9.48 6.09 -237.43 -1.44 -10.92 16 13 C 0.01 0.16 6.79 -7.54 -0.05 0.10 16 14 C 0.04 1.02 3.77 -91.24 -0.34 0.67 16 15 C -0.51 -14.11 8.82 -34.44 -0.30 -14.41 16 16 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 17 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 18 N -0.89 -25.64 13.26 55.43 0.74 -24.91 16 19 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C 0.00 -0.08 5.94 -7.54 -0.04 -0.12 16 24 C -0.10 -1.39 5.13 -27.35 -0.14 -1.53 16 25 C -0.12 -1.46 3.83 -29.60 -0.11 -1.58 16 26 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 28 H 0.06 0.48 8.13 -51.93 -0.42 0.05 16 29 H 0.07 0.70 7.63 -51.93 -0.40 0.31 16 30 H 0.07 0.91 6.97 -51.93 -0.36 0.55 16 31 H 0.06 0.60 6.63 -51.93 -0.34 0.26 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 34 H 0.06 0.85 8.06 -51.93 -0.42 0.43 16 35 H 0.05 1.17 7.62 -51.93 -0.40 0.77 16 36 H 0.06 1.47 8.14 -51.93 -0.42 1.04 16 37 H 0.06 1.73 8.11 -51.93 -0.42 1.31 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.05 1.12 7.73 -51.93 -0.40 0.72 16 41 H 0.08 1.14 6.86 -51.93 -0.36 0.79 16 42 H 0.07 0.83 6.98 -51.93 -0.36 0.47 16 43 H 0.07 0.86 7.91 -51.93 -0.41 0.45 16 44 H 0.07 1.05 7.35 -51.92 -0.38 0.67 16 LS Contribution 340.28 15.07 5.13 5.13 Total: -1.00 -30.05 340.28 -9.20 -39.25 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -7.45 Total: -0.23 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -0.46 Total: -12.32 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: -0.71 Total: -35.83 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -0.69 Total: -12.19 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.05 -9.20 -39.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172782666.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.715 kcal (2) G-P(sol) polarization free energy of solvation -30.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds