Wall clock time and date at job start Tue Mar 31 2020 06:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45190 * 1 3 3 C 1.34230 * 116.99938 * 2 1 4 4 O 1.20819 * 120.00414 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99967 * 179.97438 * 3 2 1 6 6 H 1.09007 * 109.78574 * 59.50929 * 5 3 2 7 7 C 1.54241 * 109.63014 * 299.02244 * 5 3 2 8 8 C 1.45543 * 112.40472 * 160.29789 * 7 5 3 9 9 C 1.54238 * 112.40741 * 61.94022 * 8 7 5 10 10 C 1.50474 * 108.52339 * 280.01698 * 9 8 7 11 11 H 1.08997 * 108.87467 * 333.36653 * 10 9 8 12 12 N 1.46901 * 108.87383 * 214.92576 * 10 9 8 13 13 C 1.47478 * 111.00087 * 152.99284 * 12 10 9 14 14 C 1.53511 * 87.93512 * 221.29452 * 13 12 10 15 15 C 1.50699 * 114.17172 * 139.67090 * 14 13 12 16 16 H 1.08002 * 119.99807 * 266.16093 * 15 14 13 17 17 C 1.37877 * 120.00232 * 86.15738 * 15 14 13 18 18 N 1.31517 * 119.99462 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99998 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46683 * 90.00343 * 19 17 15 21 21 H 1.48503 * 109.47083 * 210.00202 * 19 17 15 22 22 H 1.48500 * 109.47240 * 330.00128 * 19 17 15 23 23 C 1.47480 * 111.00268 * 57.02133 * 12 10 9 24 24 C 1.54066 * 112.49964 * 94.14425 * 10 9 8 25 25 C 1.50468 * 109.62815 * 179.97438 * 5 3 2 26 26 H 1.09001 * 109.47290 * 300.00478 * 1 2 3 27 27 H 1.08998 * 109.47738 * 60.00193 * 1 2 3 28 28 H 1.09006 * 109.47603 * 180.02562 * 1 2 3 29 29 H 1.08996 * 108.89452 * 281.05076 * 7 5 3 30 30 H 1.09000 * 108.89274 * 39.54821 * 7 5 3 31 31 H 1.09004 * 108.89031 * 182.68796 * 8 7 5 32 32 H 1.09000 * 108.89792 * 301.27899 * 8 7 5 33 33 H 1.08991 * 109.62863 * 160.29969 * 9 8 7 34 34 H 1.09003 * 109.62811 * 39.72191 * 9 8 7 35 35 H 1.09006 * 113.47690 * 336.06084 * 13 12 10 36 36 H 1.09000 * 113.48070 * 106.52528 * 13 12 10 37 37 H 1.09002 * 114.17047 * 272.37736 * 14 13 12 38 38 H 0.97002 * 119.99336 * 179.97438 * 18 17 15 39 39 H 1.08997 * 113.47420 * 253.47090 * 23 12 10 40 40 H 1.09000 * 113.47573 * 23.87455 * 23 12 10 41 41 H 1.09000 * 108.80852 * 79.14685 * 24 10 9 42 42 H 1.09000 * 108.81367 * 197.53191 * 24 10 9 43 43 H 1.09003 * 108.87533 * 93.08975 * 25 5 3 44 44 H 1.08997 * 108.87997 * 334.64205 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9623 0.7743 -0.8830 7 6 4.1201 0.5984 1.2713 8 6 5.5210 0.2275 1.1366 9 6 6.4336 1.4499 0.9089 10 6 6.3499 1.8456 -0.5405 11 1 6.0912 0.9671 -1.1314 12 7 7.6640 2.3376 -0.9754 13 6 7.8513 2.1348 -2.4241 14 6 9.2934 1.7045 -2.1211 15 6 9.7725 0.5329 -2.9389 16 1 9.6872 -0.4700 -2.5471 17 6 10.3196 0.7411 -4.1872 18 7 10.4239 1.9623 -4.6640 19 14 10.9141 -0.7113 -5.2004 20 1 9.8012 -1.2138 -6.0455 21 1 12.0398 -0.2816 -6.0686 22 1 11.3740 -1.7930 -4.2928 23 6 8.7088 1.3203 -0.7547 24 6 5.2984 2.9431 -0.7923 25 6 3.9968 2.7166 -0.0002 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 4.0161 1.2856 2.1109 30 1 3.5357 -0.2984 1.4769 31 1 5.8389 -0.2861 2.0439 32 1 5.6265 -0.4523 0.2912 33 1 7.4622 1.1906 1.1589 34 1 6.0994 2.2779 1.5343 35 1 7.2360 1.3335 -2.8336 36 1 7.7855 3.0557 -3.0036 37 1 10.0068 2.5280 -2.0858 38 1 10.8092 2.1088 -5.5421 39 1 9.3697 1.5510 0.0808 40 1 8.3222 0.3018 -0.7175 41 1 5.7207 3.9066 -0.5069 42 1 5.0610 2.9651 -1.8559 43 1 4.1506 3.0393 1.0296 44 1 3.2049 3.3210 -0.4426 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172782668.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:08 Heat of formation + Delta-G solvation = -64.825547 kcal Electronic energy + Delta-G solvation = -22908.908962 eV Core-core repulsion = 19633.856616 eV Total energy + Delta-G solvation = -3275.052345 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.97347 -39.65566 -37.64222 -36.55080 -33.03212 -32.37257 -31.78295 -28.40585 -27.32038 -25.85662 -24.93761 -24.02747 -22.62793 -21.61787 -20.53013 -18.93951 -18.59668 -17.81963 -17.04107 -16.55157 -16.34885 -15.24850 -14.95734 -14.74773 -14.42432 -14.24163 -13.85086 -13.69183 -13.32679 -13.10682 -12.97442 -12.44927 -12.14461 -12.05932 -11.85235 -11.36992 -11.32035 -11.03828 -11.02736 -10.97045 -10.84956 -10.78365 -10.60783 -10.52713 -10.36390 -10.27634 -9.95435 -9.57660 -9.10472 -8.88058 -8.41852 -7.92012 -6.04699 -4.09027 2.04068 2.53704 3.28604 3.35907 3.38655 4.38951 4.43101 4.50169 4.62145 4.82520 4.85380 4.92340 5.09302 5.16364 5.23000 5.26759 5.28908 5.31740 5.38919 5.44935 5.74622 5.82899 5.90935 5.96727 6.01753 6.06448 6.12119 6.17078 6.26490 6.29206 6.31566 6.38690 6.47145 6.60287 6.66448 6.71196 6.83773 7.17307 7.25036 7.58215 7.73958 7.93259 8.14252 8.39122 8.94210 9.55874 11.04883 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023277 B = 0.003726 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.603068 B = 7512.448569 C = 7840.552184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.467 3.533 4 O -0.508 6.508 5 C -0.079 4.079 6 H 0.113 0.887 7 C -0.102 4.102 8 C -0.120 4.120 9 C -0.115 4.115 10 C 0.050 3.950 11 H 0.041 0.959 12 N -0.483 5.483 13 C 0.005 3.995 14 C 0.041 3.959 15 C -0.516 4.516 16 H 0.057 0.943 17 C 0.067 3.933 18 N -0.886 5.886 19 Si 0.890 3.110 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.002 4.002 24 C -0.102 4.102 25 C -0.111 4.111 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.261 0.739 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.068 0.932 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.977 -3.305 11.049 19.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.310 3.690 4 O -0.396 6.396 5 C -0.098 4.098 6 H 0.131 0.869 7 C -0.140 4.140 8 C -0.158 4.158 9 C -0.153 4.153 10 C -0.059 4.059 11 H 0.059 0.941 12 N -0.205 5.205 13 C -0.124 4.124 14 C 0.022 3.978 15 C -0.554 4.554 16 H 0.075 0.925 17 C -0.136 4.136 18 N -0.524 5.524 19 Si 0.718 3.282 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.131 4.131 24 C -0.140 4.140 25 C -0.149 4.149 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.119 0.881 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.125 -2.231 11.204 19.762 hybrid contribution -0.243 -1.529 -1.074 1.884 sum -16.369 -3.760 10.130 19.614 Atomic orbital electron populations 1.23257 0.76620 1.03616 1.02475 1.86524 1.23204 1.33630 1.84058 1.23951 0.92334 0.81088 0.71579 1.90635 1.67166 1.36373 1.45420 1.20913 0.86073 1.00341 1.02433 0.86887 1.20459 0.97402 1.00782 0.95334 1.20484 0.94165 0.98597 1.02524 1.21502 1.00218 0.97153 0.96406 1.22022 0.92337 0.95922 0.95628 0.94077 1.68952 1.02035 1.39179 1.10379 1.24033 1.01413 0.99188 0.87733 1.20088 0.91755 0.96752 0.89234 1.21041 1.40661 0.92631 1.01073 0.92499 1.25017 0.95220 0.95553 0.97824 1.69973 1.44568 1.19751 1.18060 0.86635 0.78485 0.82887 0.80243 1.20687 1.21158 1.19823 1.23923 0.94465 0.93660 1.01023 1.21800 0.92834 0.99810 0.99569 1.21371 0.98265 0.93195 1.02104 0.92002 0.91931 0.88149 0.91461 0.91201 0.91576 0.91685 0.90683 0.91542 0.93089 0.91985 0.91917 0.92897 0.92271 0.92840 0.90673 0.92396 0.91336 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.95 10.20 -39.26 -0.40 -4.35 16 3 C 0.47 5.79 7.22 36.01 0.26 6.05 16 4 O -0.51 -7.46 15.04 -18.74 -0.28 -7.74 16 5 C -0.08 -0.90 2.31 -92.38 -0.21 -1.12 16 6 H 0.11 1.34 6.98 -51.92 -0.36 0.97 16 7 C -0.10 -1.04 4.67 -29.60 -0.14 -1.18 16 8 C -0.12 -1.32 5.26 -29.60 -0.16 -1.48 16 9 C -0.12 -1.54 5.04 -27.34 -0.14 -1.67 16 10 C 0.05 0.79 1.20 -68.42 -0.08 0.71 16 11 H 0.04 0.68 5.93 -51.93 -0.31 0.38 16 12 N -0.48 -9.40 6.12 -237.46 -1.45 -10.85 16 13 C 0.01 0.12 7.13 -7.55 -0.05 0.07 16 14 C 0.04 1.01 3.77 -91.24 -0.34 0.67 16 15 C -0.52 -13.91 8.82 -34.44 -0.30 -14.22 16 16 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 17 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 18 N -0.89 -25.49 13.26 55.43 0.74 -24.75 16 19 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 23 C 0.00 -0.04 5.47 -7.55 -0.04 -0.08 16 24 C -0.10 -1.46 5.30 -25.63 -0.14 -1.60 16 25 C -0.11 -1.37 4.68 -27.45 -0.13 -1.50 16 26 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 27 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 28 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.65 7.47 -51.93 -0.39 0.26 16 30 H 0.07 0.65 7.67 -51.93 -0.40 0.26 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.77 7.46 -51.93 -0.39 0.38 16 33 H 0.07 1.09 6.27 -51.93 -0.33 0.76 16 34 H 0.07 0.84 6.98 -51.93 -0.36 0.48 16 35 H 0.05 1.16 7.46 -51.93 -0.39 0.78 16 36 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.06 1.71 8.11 -51.93 -0.42 1.29 16 38 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.06 1.15 8.09 -51.93 -0.42 0.73 16 40 H 0.05 1.07 7.77 -51.93 -0.40 0.67 16 41 H 0.07 1.12 8.12 -51.93 -0.42 0.70 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.07 0.80 6.64 -51.93 -0.34 0.45 16 44 H 0.08 1.05 6.67 -51.93 -0.35 0.70 16 LS Contribution 338.96 15.07 5.11 5.11 Total: -1.00 -29.49 338.96 -9.17 -38.66 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -7.36 Total: 0.30 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -0.51 Total: -12.29 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: -0.72 Total: -35.61 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -0.68 Total: -12.08 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.49 -9.17 -38.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172782668.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.164 kcal (2) G-P(sol) polarization free energy of solvation -29.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds