Wall clock time and date at job start Tue Mar 31 2020 06:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 117.00288 * 2 1 4 4 O 1.20826 * 119.99571 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00032 * 180.02562 * 3 2 1 6 6 H 1.08999 * 108.85377 * 298.55852 * 5 3 2 7 7 C 1.50466 * 108.87835 * 57.02108 * 5 3 2 8 8 C 1.54235 * 108.51879 * 214.92836 * 7 5 3 9 9 C 1.45387 * 112.55957 * 280.13084 * 8 7 5 10 10 C 1.54241 * 112.49454 * 61.62617 * 9 8 7 11 11 H 1.09005 * 109.63000 * 40.12403 * 10 9 8 12 12 N 1.46896 * 109.62939 * 160.50721 * 10 9 8 13 13 C 1.47955 * 111.00525 * 294.61424 * 12 10 9 14 14 C 1.53937 * 86.18157 * 222.41550 * 13 12 10 15 15 C 1.50698 * 113.73227 * 138.07796 * 14 13 12 16 16 H 1.08007 * 119.99937 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00395 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99877 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00430 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47141 * 90.00257 * 19 17 15 21 21 H 1.48499 * 109.47579 * 210.00135 * 19 17 15 22 22 H 1.48502 * 109.47298 * 330.00538 * 19 17 15 23 23 C 1.47961 * 111.00015 * 195.25068 * 12 10 9 24 24 C 1.50475 * 108.68322 * 280.31991 * 10 9 8 25 25 C 1.54056 * 112.49585 * 94.05116 * 24 10 9 26 26 H 1.08994 * 109.47296 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46927 * 300.00021 * 1 2 3 28 28 H 1.09003 * 109.47121 * 59.99466 * 1 2 3 29 29 H 1.08992 * 109.63262 * 334.64034 * 7 5 3 30 30 H 1.09003 * 109.62554 * 95.22271 * 7 5 3 31 31 H 1.09000 * 108.89448 * 40.76473 * 8 7 5 32 32 H 1.09005 * 108.89854 * 159.35541 * 8 7 5 33 33 H 1.09001 * 108.68971 * 300.95172 * 9 8 7 34 34 H 1.09007 * 109.01143 * 182.51530 * 9 8 7 35 35 H 1.09005 * 113.75866 * 108.09946 * 13 12 10 36 36 H 1.08996 * 113.75657 * 336.74002 * 13 12 10 37 37 H 1.08998 * 113.73224 * 269.35967 * 14 13 12 38 38 H 0.96994 * 120.00600 * 180.02562 * 18 17 15 39 39 H 1.09002 * 113.75838 * 23.27140 * 23 12 10 40 40 H 1.09002 * 113.86277 * 251.91297 * 23 12 10 41 41 H 1.08996 * 108.87374 * 214.83118 * 24 10 9 42 42 H 1.09004 * 108.87662 * 333.37368 * 24 10 9 43 43 H 1.09003 * 108.81806 * 79.14146 * 25 24 10 44 44 H 1.09003 * 108.81731 * 197.53484 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9443 0.8006 0.9052 7 6 4.0926 0.5266 -1.1953 8 6 5.4229 -0.1485 -0.8035 9 6 6.5455 0.7751 -0.8285 10 6 6.3771 1.9359 0.1730 11 1 5.9501 1.5588 1.1023 12 7 7.6848 2.5480 0.4435 13 6 8.5821 1.5973 1.1364 14 6 8.9893 2.7877 2.0234 15 6 9.1153 2.4402 3.4844 16 1 8.9249 1.4307 3.8177 17 6 9.4746 3.4107 4.3953 18 7 9.7070 4.6399 3.9894 19 14 9.6301 2.9802 6.2063 20 1 11.0209 2.5466 6.4944 21 1 9.3031 4.1728 7.0285 22 1 8.6900 1.8789 6.5358 23 6 7.6300 3.4051 1.6484 24 6 5.4538 2.9609 -0.4281 25 6 3.9879 2.7567 -0.0004 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 3.3720 -0.2329 -1.4983 30 1 4.2630 1.2222 -2.0170 31 1 5.3285 -0.5572 0.2025 32 1 5.6229 -0.9643 -1.4983 33 1 6.6371 1.1865 -1.8337 34 1 7.4586 0.2306 -0.5875 35 1 9.3902 1.2199 0.5097 36 1 8.0556 0.8088 1.6740 37 1 9.8447 3.3459 1.6429 38 1 9.9601 5.3227 4.6301 39 1 6.8250 3.1453 2.3359 40 1 7.6771 4.4725 1.4327 41 1 5.7775 3.9536 -0.1152 42 1 5.5149 2.8966 -1.5145 43 1 3.8552 3.1597 1.0036 44 1 3.3419 3.3042 -0.6867 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172782669.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:11 Heat of formation + Delta-G solvation = -68.883236 kcal Electronic energy + Delta-G solvation = -22972.344973 eV Core-core repulsion = 19697.116673 eV Total energy + Delta-G solvation = -3275.228300 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.92422 -39.52385 -37.45222 -36.54362 -32.98872 -32.48719 -31.75126 -28.33067 -27.30970 -25.67734 -24.93018 -24.31688 -22.64163 -21.49011 -20.37293 -19.01243 -18.56663 -17.72246 -17.05800 -16.53495 -16.32297 -15.29232 -14.86154 -14.70987 -14.38133 -14.26237 -13.87935 -13.66722 -13.29928 -13.24640 -12.65354 -12.39136 -12.16572 -12.06867 -11.88383 -11.41340 -11.28564 -11.17846 -11.03429 -10.98478 -10.89038 -10.76216 -10.49963 -10.47084 -10.35987 -10.27972 -9.86098 -9.60697 -9.07319 -8.93397 -8.42709 -7.81611 -6.03998 -4.08399 2.08028 2.53865 3.29037 3.36242 3.38612 4.39949 4.45569 4.54379 4.61248 4.86294 4.90007 4.94408 5.02900 5.12747 5.25738 5.27224 5.27994 5.34172 5.35506 5.53869 5.64405 5.86503 5.88117 5.94703 6.05781 6.08799 6.19065 6.24611 6.26868 6.31888 6.38218 6.42039 6.47917 6.61095 6.67768 6.69090 6.90398 7.17289 7.29517 7.60659 7.74617 7.93689 8.15168 8.39154 8.94413 9.56487 11.05405 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021054 B = 0.003964 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.591606 B = 7061.322464 C = 7582.736713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.463 3.537 4 O -0.508 6.508 5 C -0.076 4.076 6 H 0.109 0.891 7 C -0.111 4.111 8 C -0.111 4.111 9 C -0.114 4.114 10 C 0.054 3.946 11 H 0.043 0.957 12 N -0.487 5.487 13 C 0.000 4.000 14 C 0.039 3.961 15 C -0.518 4.518 16 H 0.056 0.944 17 C 0.066 3.934 18 N -0.886 5.886 19 Si 0.889 3.111 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.013 3.987 24 C -0.105 4.105 25 C -0.103 4.103 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.261 0.739 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.273 -9.327 -10.189 19.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.306 3.694 4 O -0.395 6.395 5 C -0.095 4.095 6 H 0.127 0.873 7 C -0.149 4.149 8 C -0.149 4.149 9 C -0.152 4.152 10 C -0.055 4.055 11 H 0.061 0.939 12 N -0.210 5.210 13 C -0.128 4.128 14 C 0.020 3.980 15 C -0.556 4.556 16 H 0.074 0.926 17 C -0.136 4.136 18 N -0.524 5.524 19 Si 0.717 3.283 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.115 4.115 24 C -0.142 4.142 25 C -0.141 4.141 26 H 0.118 0.882 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.289 -8.567 -10.767 19.836 hybrid contribution -0.627 -0.457 1.864 2.019 sum -14.915 -9.023 -8.903 19.574 Atomic orbital electron populations 1.23249 0.76659 1.03555 1.02482 1.86518 1.23159 1.33714 1.84170 1.24116 0.92469 0.81105 0.71720 1.90651 1.67327 1.36376 1.45195 1.21053 0.85924 0.99983 1.02567 0.87340 1.21396 0.97724 0.99314 0.96447 1.20421 0.94149 0.98425 1.01911 1.20470 0.98334 0.96565 0.99818 1.21894 0.92439 0.94085 0.97119 0.93885 1.68530 1.07506 1.12791 1.32126 1.24000 0.96098 0.96698 0.96049 1.20303 0.93342 0.90549 0.93850 1.21098 1.47095 0.95703 0.91695 0.92564 1.25006 0.94765 0.95059 0.98786 1.69963 1.46373 1.01578 1.34469 0.86646 0.78453 0.77931 0.85271 1.20583 1.21218 1.19933 1.24028 1.01312 0.97449 0.88739 1.21286 0.91949 1.00394 1.00619 1.21867 0.97010 0.92102 1.03092 0.88181 0.91960 0.92013 0.90837 0.90602 0.91981 0.91766 0.91935 0.91573 0.91895 0.92864 0.92311 0.92906 0.92963 0.91606 0.90765 0.91913 0.91465 0.90858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.98 9.92 -39.26 -0.39 -4.36 16 3 C 0.46 5.87 7.16 36.00 0.26 6.12 16 4 O -0.51 -7.72 15.31 -18.75 -0.29 -8.01 16 5 C -0.08 -0.90 2.12 -92.48 -0.20 -1.10 16 6 H 0.11 1.28 6.63 -51.93 -0.34 0.93 16 7 C -0.11 -1.14 5.11 -27.35 -0.14 -1.28 16 8 C -0.11 -1.19 5.25 -29.67 -0.16 -1.35 16 9 C -0.11 -1.50 4.81 -29.67 -0.14 -1.65 16 10 C 0.05 0.85 1.19 -68.33 -0.08 0.77 16 11 H 0.04 0.73 6.54 -51.93 -0.34 0.39 16 12 N -0.49 -9.47 5.93 -231.09 -1.37 -10.84 16 13 C 0.00 0.00 6.19 -2.77 -0.02 -0.01 16 14 C 0.04 0.96 3.61 -90.84 -0.33 0.63 16 15 C -0.52 -14.00 8.77 -34.44 -0.30 -14.31 16 16 H 0.06 1.50 7.81 -52.48 -0.41 1.09 16 17 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 18 N -0.89 -25.50 13.27 55.43 0.74 -24.77 16 19 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 C 0.01 0.30 6.71 -2.77 -0.02 0.28 16 24 C -0.10 -1.50 4.94 -27.44 -0.14 -1.63 16 25 C -0.10 -1.35 4.80 -25.62 -0.12 -1.47 16 26 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 28 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 29 H 0.07 0.69 7.23 -51.93 -0.38 0.31 16 30 H 0.08 0.77 6.98 -51.93 -0.36 0.41 16 31 H 0.06 0.68 7.47 -51.93 -0.39 0.30 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.80 7.49 -51.93 -0.39 0.41 16 34 H 0.07 0.93 6.89 -51.93 -0.36 0.57 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.05 1.08 7.82 -51.93 -0.41 0.67 16 37 H 0.06 1.60 8.13 -51.93 -0.42 1.18 16 38 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 39 H 0.05 1.20 7.65 -51.93 -0.40 0.80 16 40 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 41 H 0.07 1.19 7.29 -51.93 -0.38 0.81 16 42 H 0.06 0.83 6.64 -51.93 -0.34 0.48 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.07 0.97 7.35 -51.93 -0.38 0.59 16 LS Contribution 339.18 15.07 5.11 5.11 Total: -1.00 -29.60 339.18 -9.02 -38.62 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -7.39 Total: 0.15 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -0.41 Total: -11.92 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: -0.64 Total: -35.61 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -0.68 Total: -12.37 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.60 -9.02 -38.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172782669.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.263 kcal (2) G-P(sol) polarization free energy of solvation -29.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds