Wall clock time and date at job start Tue Mar 31 2020 05:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45201 * 109.46920 * 2 1 4 4 C 1.34233 * 116.99769 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99923 * 0.02562 * 4 3 2 6 6 C 1.50695 * 119.99939 * 179.97438 * 4 3 2 7 7 C 1.53513 * 114.17006 * 179.97438 * 6 4 3 8 8 N 1.47477 * 87.93060 * 139.67635 * 7 6 4 9 9 C 1.46905 * 111.00159 * 221.29975 * 8 7 6 10 10 C 1.53001 * 109.46846 * 291.92478 * 9 8 7 11 11 C 1.53004 * 109.47285 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.46578 * 60.00295 * 11 10 9 13 13 C 1.50693 * 109.47469 * 60.00234 * 12 11 10 14 14 H 1.08001 * 119.99800 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00057 * 179.72842 * 13 12 11 16 16 N 1.31514 * 120.00080 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99704 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47462 * 59.99447 * 17 15 13 19 19 H 1.48500 * 109.46540 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46737 * 299.98999 * 17 15 13 21 21 C 1.53001 * 109.47072 * 299.99835 * 12 11 10 22 22 C 1.52996 * 109.47067 * 60.00601 * 21 12 11 23 23 C 1.47477 * 87.83672 * 332.99077 * 8 7 6 24 24 H 1.09001 * 109.47239 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47269 * 300.00311 * 1 2 3 26 26 H 1.09007 * 109.47327 * 60.00210 * 1 2 3 27 27 H 1.08996 * 109.47432 * 240.00020 * 2 1 3 28 28 H 1.08996 * 109.46884 * 119.99810 * 2 1 3 29 29 H 1.09003 * 113.25749 * 47.05663 * 6 4 3 30 30 H 1.09000 * 113.47422 * 24.90927 * 7 6 4 31 31 H 1.08998 * 113.53087 * 254.44912 * 7 6 4 32 32 H 1.08996 * 109.46858 * 51.92063 * 9 8 7 33 33 H 1.09007 * 109.47286 * 60.00023 * 10 9 8 34 34 H 1.08996 * 109.47317 * 299.99947 * 10 9 8 35 35 H 1.08996 * 109.47303 * 300.00450 * 11 10 9 36 36 H 1.09002 * 109.47145 * 179.97438 * 11 10 9 37 37 H 1.09002 * 109.46746 * 179.97438 * 12 11 10 38 38 H 0.96997 * 119.99799 * 180.02562 * 16 15 13 39 39 H 1.09007 * 109.47286 * 180.02562 * 21 12 11 40 40 H 1.08996 * 109.47317 * 300.00157 * 21 12 11 41 41 H 1.08997 * 109.47281 * 180.02562 * 22 21 12 42 42 H 1.08996 * 109.47415 * 59.99615 * 22 21 12 43 43 H 1.09000 * 113.47632 * 141.78166 * 23 8 7 44 44 H 1.09004 * 113.47850 * 272.24509 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4551 2.9829 0.0013 8 7 5.3694 4.1037 -0.9533 9 6 6.3852 3.9767 -2.0070 10 6 7.7759 4.1776 -1.4015 11 6 8.8339 4.0447 -2.4987 12 6 8.5884 5.1042 -3.5748 13 6 8.6742 6.4764 -2.9578 14 1 8.8826 6.5822 -1.9034 15 6 8.4917 7.5968 -3.7403 16 7 8.2432 7.4681 -5.0253 17 14 8.5988 9.2978 -2.9754 18 1 9.9466 9.4899 -2.3824 19 1 8.3674 10.3262 -4.0214 20 1 7.5679 9.4292 -1.9147 21 6 7.1977 4.9034 -4.1803 22 6 6.1397 5.0362 -3.0831 23 6 4.0755 3.5531 -1.3976 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 3.4544 3.5963 0.7325 30 1 5.9164 2.0891 -0.4187 31 1 5.8813 3.2643 0.9642 32 1 6.3233 2.9844 -2.4536 33 1 7.9510 3.4226 -0.6350 34 1 7.8378 5.1699 -0.9548 35 1 8.7719 3.0523 -2.9450 36 1 9.8247 4.1883 -2.0673 37 1 9.3424 5.0099 -4.3563 38 1 8.1152 8.2563 -5.5759 39 1 7.0229 5.6579 -4.9473 40 1 7.1356 3.9109 -4.6267 41 1 5.1490 4.8927 -3.5144 42 1 6.2018 6.0287 -2.6368 43 1 3.3314 4.3180 -1.6200 44 1 4.1685 2.8115 -2.1910 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173340111.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:48 Heat of formation + Delta-G solvation = -68.723798 kcal Electronic energy + Delta-G solvation = -22777.436359 eV Core-core repulsion = 19502.214973 eV Total energy + Delta-G solvation = -3275.221386 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.18642 -39.62667 -37.16760 -36.51647 -32.63799 -32.02309 -30.50337 -29.61608 -27.31586 -25.92408 -24.81830 -23.71230 -22.23864 -21.30618 -20.39980 -19.69655 -18.68970 -17.91970 -16.85391 -16.67213 -15.89790 -15.44775 -14.79497 -14.56603 -14.34115 -13.88363 -13.84342 -13.25627 -13.06189 -12.88444 -12.78875 -12.53866 -12.33634 -12.16661 -11.87252 -11.42664 -11.23041 -11.02211 -10.96272 -10.83924 -10.78689 -10.65467 -10.54370 -10.47746 -10.26427 -10.05338 -9.58088 -9.13720 -8.83015 -8.67523 -8.56820 -8.21037 -5.90979 -3.94732 2.00963 2.44536 3.36998 3.41301 3.44744 4.03849 4.20715 4.50487 4.58357 4.61815 4.69540 4.90639 4.95665 5.12560 5.28505 5.37782 5.39979 5.45056 5.51303 5.59392 5.64920 5.70625 5.77465 5.93162 6.02373 6.18748 6.23523 6.30188 6.51619 6.55628 6.62915 6.74132 6.83269 6.87464 7.08470 7.23621 7.32245 7.55677 7.59041 7.64864 7.79928 7.98214 8.20224 8.54568 9.07152 9.68288 11.15208 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031140 B = 0.003547 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.938992 B = 7891.070827 C = 8066.231686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.356 6.356 4 C 0.474 3.526 5 O -0.507 6.507 6 C -0.121 4.121 7 C 0.020 3.980 8 N -0.460 5.460 9 C 0.060 3.940 10 C -0.096 4.096 11 C -0.106 4.106 12 C 0.044 3.956 13 C -0.498 4.498 14 H 0.055 0.945 15 C 0.061 3.939 16 N -0.893 5.893 17 Si 0.885 3.115 18 H -0.279 1.279 19 H -0.289 1.289 20 H -0.277 1.277 21 C -0.107 4.107 22 C -0.088 4.088 23 C 0.022 3.978 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.135 0.865 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.079 0.921 35 H 0.031 0.969 36 H 0.048 0.952 37 H 0.024 0.976 38 H 0.258 0.742 39 H 0.092 0.908 40 H 0.011 0.989 41 H 0.029 0.971 42 H 0.080 0.920 43 H 0.097 0.903 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.332 -12.025 9.035 20.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.273 6.273 4 C 0.317 3.683 5 O -0.394 6.394 6 C -0.141 4.141 7 C -0.108 4.108 8 N -0.182 5.182 9 C -0.048 4.048 10 C -0.134 4.134 11 C -0.144 4.144 12 C 0.025 3.975 13 C -0.537 4.537 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.533 5.533 17 Si 0.713 3.287 18 H -0.205 1.205 19 H -0.215 1.215 20 H -0.202 1.202 21 C -0.145 4.145 22 C -0.126 4.126 23 C -0.107 4.107 24 H 0.097 0.903 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.153 0.847 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.098 0.902 35 H 0.050 0.950 36 H 0.067 0.933 37 H 0.042 0.958 38 H 0.068 0.932 39 H 0.111 0.889 40 H 0.030 0.970 41 H 0.048 0.952 42 H 0.099 0.901 43 H 0.115 0.885 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.078 -11.521 9.071 19.648 hybrid contribution 0.014 -0.090 0.030 0.096 sum -13.064 -11.611 9.101 19.706 Atomic orbital electron populations 1.21806 0.92582 1.02925 1.03628 1.23031 0.95430 0.80403 1.02577 1.86537 1.24646 1.32219 1.83861 1.23633 0.80421 0.92445 0.71842 1.90664 1.60507 1.42989 1.45282 1.22807 0.98120 0.90679 1.02472 1.23736 0.91615 0.95396 1.00102 1.69096 1.02192 1.35449 1.11453 1.22312 0.92316 0.98182 0.92035 1.21407 0.92838 1.01860 0.97313 1.21554 0.97103 0.98362 0.97418 1.18689 0.93167 0.92818 0.92808 1.21104 1.47275 0.90424 0.94869 0.92699 1.24928 0.95496 0.98746 0.94782 1.69859 1.49418 1.29162 1.04832 0.86773 0.78532 0.84489 0.78913 1.20496 1.21517 1.20223 1.21517 0.96617 0.98343 0.98062 1.21336 0.96959 0.99172 0.95091 1.23674 0.95606 0.98385 0.93061 0.90292 0.91453 0.91357 0.91248 0.91284 0.84701 0.90025 0.88911 0.94680 0.94653 0.90227 0.95019 0.93308 0.95802 0.93165 0.88927 0.97024 0.95190 0.90108 0.88452 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.29 37.16 0.38 -0.56 16 2 C 0.06 0.53 6.19 37.16 0.23 0.76 16 3 O -0.36 -4.02 10.22 -39.27 -0.40 -4.42 16 4 C 0.47 6.04 7.52 36.00 0.27 6.31 16 5 O -0.51 -7.74 15.69 -18.75 -0.29 -8.04 16 6 C -0.12 -1.44 4.59 -91.25 -0.42 -1.86 16 7 C 0.02 0.28 6.06 -7.55 -0.05 0.23 16 8 N -0.46 -7.32 6.13 -236.62 -1.45 -8.77 16 9 C 0.06 1.09 1.54 -67.71 -0.10 0.99 16 10 C -0.10 -1.86 5.00 -26.73 -0.13 -1.99 16 11 C -0.11 -2.22 5.41 -26.73 -0.14 -2.37 16 12 C 0.04 1.07 2.58 -91.77 -0.24 0.83 16 13 C -0.50 -13.25 6.61 -34.44 -0.23 -13.48 16 14 H 0.05 1.46 6.71 -52.49 -0.35 1.10 16 15 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 16 N -0.89 -25.26 11.34 55.43 0.63 -24.64 16 17 Si 0.88 21.27 29.54 -169.99 -5.02 16.25 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C -0.11 -2.50 5.24 -26.73 -0.14 -2.64 16 22 C -0.09 -1.84 5.11 -26.73 -0.14 -1.98 16 23 C 0.02 0.29 6.67 -7.56 -0.05 0.24 16 24 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.63 8.13 -51.93 -0.42 0.20 16 28 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 29 H 0.14 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.08 1.21 7.11 -51.93 -0.37 0.84 16 31 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.04 0.65 7.56 -51.93 -0.39 0.25 16 33 H 0.03 0.61 7.45 -51.93 -0.39 0.22 16 34 H 0.08 1.69 6.62 -51.93 -0.34 1.35 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.09 2.43 6.09 -51.93 -0.32 2.11 16 40 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.03 0.58 7.74 -51.93 -0.40 0.17 16 42 H 0.08 1.91 7.22 -51.93 -0.37 1.54 16 43 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.07 0.98 7.63 -51.93 -0.40 0.58 16 LS Contribution 342.48 15.07 5.16 5.16 Total: -1.00 -29.22 342.48 -9.77 -38.99 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -7.54 Total: -0.60 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: -0.85 Total: -13.94 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: -0.82 Total: -33.41 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -0.70 Total: -12.46 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.22 -9.77 -38.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173340111.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.731 kcal (2) G-P(sol) polarization free energy of solvation -29.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds