Wall clock time and date at job start Tue Mar 31 2020 05:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45201 * 109.46920 * 2 1 4 4 C 1.34233 * 116.99769 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99923 * 0.02562 * 4 3 2 6 6 C 1.50695 * 119.99939 * 179.97438 * 4 3 2 7 7 C 1.53513 * 114.17006 * 179.97438 * 6 4 3 8 8 N 1.47477 * 87.93060 * 139.67635 * 7 6 4 9 9 C 1.46905 * 111.00159 * 221.29975 * 8 7 6 10 10 C 1.53001 * 109.46846 * 291.92478 * 9 8 7 11 11 C 1.53004 * 109.47285 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.46578 * 60.00295 * 11 10 9 13 13 C 1.50693 * 109.47469 * 60.00234 * 12 11 10 14 14 H 1.08001 * 119.99800 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00057 * 179.72842 * 13 12 11 16 16 N 1.31514 * 120.00080 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99704 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47462 * 59.99447 * 17 15 13 19 19 H 1.48500 * 109.46540 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46737 * 299.98999 * 17 15 13 21 21 C 1.53001 * 109.47072 * 299.99835 * 12 11 10 22 22 C 1.52996 * 109.47067 * 60.00601 * 21 12 11 23 23 C 1.47477 * 87.83672 * 332.99077 * 8 7 6 24 24 H 1.09001 * 109.47239 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47269 * 300.00311 * 1 2 3 26 26 H 1.09007 * 109.47327 * 60.00210 * 1 2 3 27 27 H 1.08996 * 109.47432 * 240.00020 * 2 1 3 28 28 H 1.08996 * 109.46884 * 119.99810 * 2 1 3 29 29 H 1.09003 * 113.25749 * 47.05663 * 6 4 3 30 30 H 1.09000 * 113.47422 * 24.90927 * 7 6 4 31 31 H 1.08998 * 113.53087 * 254.44912 * 7 6 4 32 32 H 1.08996 * 109.46858 * 51.92063 * 9 8 7 33 33 H 1.09007 * 109.47286 * 60.00023 * 10 9 8 34 34 H 1.08996 * 109.47317 * 299.99947 * 10 9 8 35 35 H 1.08996 * 109.47303 * 300.00450 * 11 10 9 36 36 H 1.09002 * 109.47145 * 179.97438 * 11 10 9 37 37 H 1.09002 * 109.46746 * 179.97438 * 12 11 10 38 38 H 0.96997 * 119.99799 * 180.02562 * 16 15 13 39 39 H 1.09007 * 109.47286 * 180.02562 * 21 12 11 40 40 H 1.08996 * 109.47317 * 300.00157 * 21 12 11 41 41 H 1.08997 * 109.47281 * 180.02562 * 22 21 12 42 42 H 1.08996 * 109.47415 * 59.99615 * 22 21 12 43 43 H 1.09000 * 113.47632 * 141.78166 * 23 8 7 44 44 H 1.09004 * 113.47850 * 272.24509 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4551 2.9829 0.0013 8 7 5.3694 4.1037 -0.9533 9 6 6.3852 3.9767 -2.0070 10 6 7.7759 4.1776 -1.4015 11 6 8.8339 4.0447 -2.4987 12 6 8.5884 5.1042 -3.5748 13 6 8.6742 6.4764 -2.9578 14 1 8.8826 6.5822 -1.9034 15 6 8.4917 7.5968 -3.7403 16 7 8.2432 7.4681 -5.0253 17 14 8.5988 9.2978 -2.9754 18 1 9.9466 9.4899 -2.3824 19 1 8.3674 10.3262 -4.0214 20 1 7.5679 9.4292 -1.9147 21 6 7.1977 4.9034 -4.1803 22 6 6.1397 5.0362 -3.0831 23 6 4.0755 3.5531 -1.3976 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 3.4544 3.5963 0.7325 30 1 5.9164 2.0891 -0.4187 31 1 5.8813 3.2643 0.9642 32 1 6.3233 2.9844 -2.4536 33 1 7.9510 3.4226 -0.6350 34 1 7.8378 5.1699 -0.9548 35 1 8.7719 3.0523 -2.9450 36 1 9.8247 4.1883 -2.0673 37 1 9.3424 5.0099 -4.3563 38 1 8.1152 8.2563 -5.5759 39 1 7.0229 5.6579 -4.9473 40 1 7.1356 3.9109 -4.6267 41 1 5.1490 4.8927 -3.5144 42 1 6.2018 6.0287 -2.6368 43 1 3.3314 4.3180 -1.6200 44 1 4.1685 2.8115 -2.1910 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173340111.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:48 Heat of formation + Delta-G solvation = -85.814611 kcal Electronic energy + Delta-G solvation = -22778.177472 eV Core-core repulsion = 19502.214973 eV Total energy + Delta-G solvation = -3275.962499 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.24908 -40.75637 -38.70213 -37.58420 -34.51567 -32.78082 -32.01349 -31.32673 -28.73293 -27.03493 -26.68388 -24.69269 -23.23834 -22.99041 -21.79869 -20.79006 -20.44823 -18.94228 -17.87511 -17.70154 -17.65618 -16.68306 -16.61478 -15.89918 -15.56150 -15.18958 -15.00057 -14.67198 -14.59495 -14.23737 -13.77241 -13.67381 -13.61439 -13.16763 -12.95481 -12.83971 -12.78008 -12.63205 -12.52456 -12.48942 -12.18996 -12.13722 -11.83486 -11.76955 -11.54608 -11.49627 -11.42350 -10.91221 -10.69090 -10.45224 -10.27555 -9.89944 -8.00356 -6.09816 1.02673 1.44458 1.45321 1.52023 1.58361 2.48857 2.92586 3.17987 3.28192 3.68369 3.86568 3.93872 4.00373 4.03201 4.07785 4.13013 4.34287 4.37456 4.43991 4.58953 4.65645 4.68253 4.76105 4.82255 4.84377 4.87324 4.92549 4.94059 4.97280 5.02936 5.13823 5.17799 5.32801 5.41526 5.43639 5.53407 5.63779 5.69559 5.75200 5.98062 6.10729 6.23604 6.48419 6.64796 6.99010 7.55808 9.04649 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031140 B = 0.003547 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.938992 B = 7891.070827 C = 8066.231686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.051 3.949 3 O -0.356 6.356 4 C 0.479 3.521 5 O -0.536 6.536 6 C -0.104 4.104 7 C 0.019 3.981 8 N -0.473 5.473 9 C 0.070 3.930 10 C -0.090 4.090 11 C -0.102 4.102 12 C 0.038 3.962 13 C -0.504 4.504 14 H 0.052 0.948 15 C 0.014 3.986 16 N -0.920 5.920 17 Si 0.942 3.058 18 H -0.275 1.275 19 H -0.289 1.289 20 H -0.272 1.272 21 C -0.103 4.103 22 C -0.077 4.077 23 C 0.020 3.980 24 H 0.099 0.901 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.160 0.840 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.040 0.960 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.046 0.954 36 H 0.048 0.952 37 H -0.012 1.012 38 H 0.257 0.743 39 H 0.059 0.941 40 H 0.023 0.977 41 H 0.044 0.956 42 H 0.050 0.950 43 H 0.109 0.891 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.873 -12.706 10.774 22.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 O -0.273 6.273 4 C 0.322 3.678 5 O -0.425 6.425 6 C -0.123 4.123 7 C -0.110 4.110 8 N -0.195 5.195 9 C -0.039 4.039 10 C -0.127 4.127 11 C -0.140 4.140 12 C 0.019 3.981 13 C -0.542 4.542 14 H 0.071 0.929 15 C -0.184 4.184 16 N -0.561 5.561 17 Si 0.768 3.232 18 H -0.200 1.200 19 H -0.214 1.214 20 H -0.197 1.197 21 C -0.141 4.141 22 C -0.115 4.115 23 C -0.109 4.109 24 H 0.118 0.882 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.177 0.823 30 H 0.090 0.910 31 H 0.124 0.876 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.006 0.994 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.042 0.958 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.128 0.872 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.634 -12.204 10.822 21.914 hybrid contribution 0.467 0.057 -0.532 0.710 sum -14.167 -12.147 10.290 21.311 Atomic orbital electron populations 1.21826 0.90358 1.04366 1.03785 1.23318 0.97175 0.79221 1.02550 1.86534 1.23711 1.33727 1.83313 1.23698 0.80739 0.92287 0.71037 1.90658 1.61226 1.43922 1.46741 1.22730 0.96954 0.90607 1.02002 1.23756 0.93180 0.94128 0.99905 1.69056 1.02485 1.36813 1.11162 1.22069 0.92699 0.97106 0.91992 1.21303 0.92869 1.01450 0.97109 1.21462 0.97881 0.97724 0.96907 1.18690 0.92877 0.93495 0.92995 1.21346 1.46556 0.91541 0.94729 0.92934 1.25612 0.95510 1.02089 0.95183 1.70004 1.50416 1.29777 1.05903 0.85862 0.78620 0.80554 0.78143 1.20034 1.21449 1.19676 1.21370 0.96799 0.97818 0.98128 1.21138 0.96768 0.98567 0.95056 1.23736 0.94568 0.98687 0.93927 0.88223 0.91052 0.91395 0.91611 0.91077 0.82258 0.90981 0.87630 0.94220 0.92088 0.92321 0.93499 0.93283 0.99360 0.93407 0.92204 0.95810 0.93754 0.93073 0.87228 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.29 71.98 0.74 -0.72 16 2 C 0.05 0.81 6.19 71.98 0.45 1.26 16 3 O -0.36 -7.29 10.22 -51.45 -0.53 -7.81 16 4 C 0.48 11.19 7.52 71.23 0.54 11.72 16 5 O -0.54 -15.55 15.69 21.96 0.34 -15.20 16 6 C -0.10 -2.18 4.59 -11.20 -0.05 -2.23 16 7 C 0.02 0.47 6.06 83.57 0.51 0.98 16 8 N -0.47 -14.08 6.13 -902.51 -5.53 -19.61 16 9 C 0.07 2.46 1.54 44.92 0.07 2.53 16 10 C -0.09 -3.33 5.00 30.60 0.15 -3.18 16 11 C -0.10 -4.19 5.41 30.60 0.17 -4.03 16 12 C 0.04 1.90 2.58 -11.54 -0.03 1.87 16 13 C -0.50 -27.20 6.61 25.60 0.17 -27.03 16 14 H 0.05 2.81 6.71 -2.91 -0.02 2.79 16 15 C 0.01 0.76 5.30 84.66 0.45 1.21 16 16 N -0.92 -53.42 11.34 21.45 0.24 -53.18 16 17 Si 0.94 44.00 29.54 68.60 2.03 46.03 16 18 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 19 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 21 C -0.10 -4.86 5.24 30.59 0.16 -4.70 16 22 C -0.08 -3.22 5.11 30.59 0.16 -3.06 16 23 C 0.02 0.48 6.67 83.57 0.56 1.04 16 24 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.07 0.69 8.14 -2.38 -0.02 0.68 16 27 H 0.07 1.10 8.13 -2.39 -0.02 1.08 16 28 H 0.07 1.11 8.13 -2.39 -0.02 1.09 16 29 H 0.16 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.07 1.99 7.11 -2.39 -0.02 1.97 16 31 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.04 1.38 7.56 -2.39 -0.02 1.36 16 33 H 0.06 1.96 7.45 -2.38 -0.02 1.94 16 34 H 0.06 2.44 6.62 -2.39 -0.02 2.42 16 35 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 37 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 38 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 39 H 0.06 3.24 6.09 -2.38 -0.01 3.22 16 40 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.04 1.68 7.74 -2.39 -0.02 1.66 16 42 H 0.05 2.43 7.22 -2.39 -0.02 2.41 16 43 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.07 1.72 7.63 -2.39 -0.02 1.70 16 Total: -1.00 -63.36 342.48 1.54 -61.81 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 0.96 Total: 12.29 kcal Atomic # 6 Polarization: -28.37 SS G_CDS: 4.03 Total: -24.34 kcal Atomic # 7 Polarization: -67.50 SS G_CDS: -5.29 Total: -72.78 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.18 Total: -23.01 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -63.36 1.54 -61.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173340111.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.001 kcal (2) G-P(sol) polarization free energy of solvation -63.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds