Wall clock time and date at job start Tue Mar 31 2020 05:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20762 * 120.00139 * 2 1 4 4 C 1.50708 * 119.99974 * 179.97438 * 2 1 3 5 5 H 1.08999 * 109.50621 * 320.08856 * 4 2 1 6 6 C 1.53100 * 109.50503 * 80.21906 * 4 2 1 7 7 N 1.47015 * 109.25545 * 176.78201 * 6 4 2 8 8 C 1.46902 * 110.99482 * 177.60835 * 7 6 4 9 9 C 1.53006 * 109.46626 * 189.68255 * 8 7 6 10 10 C 1.52999 * 109.46626 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.46991 * 60.00378 * 10 9 8 12 12 C 1.50712 * 109.46964 * 179.97438 * 11 10 9 13 13 H 1.07995 * 119.99399 * 120.00337 * 12 11 10 14 14 C 1.37873 * 120.00090 * 299.99625 * 12 11 10 15 15 N 1.31516 * 119.99904 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99987 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46797 * 90.00237 * 16 14 12 18 18 H 1.48500 * 109.47032 * 210.00368 * 16 14 12 19 19 H 1.48495 * 109.46845 * 330.00760 * 16 14 12 20 20 C 1.52996 * 109.47131 * 299.99311 * 11 10 9 21 21 C 1.52997 * 109.47094 * 69.68570 * 8 7 6 22 22 C 1.47012 * 110.75351 * 301.38653 * 7 6 4 23 23 C 1.53096 * 109.25921 * 58.61925 * 22 7 6 24 24 O 1.43014 * 109.25709 * 303.14820 * 23 22 7 25 25 H 1.09004 * 109.46965 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47321 * 300.00306 * 1 2 3 27 27 H 1.09001 * 109.46505 * 60.00617 * 1 2 3 28 28 H 1.09001 * 109.50551 * 56.85020 * 6 4 2 29 29 H 1.08998 * 109.50571 * 296.72161 * 6 4 2 30 30 H 1.09001 * 109.47582 * 309.67841 * 8 7 6 31 31 H 1.08993 * 109.46955 * 300.00347 * 9 8 7 32 32 H 1.09000 * 109.47050 * 60.00176 * 9 8 7 33 33 H 1.09002 * 109.46719 * 180.02562 * 10 9 8 34 34 H 1.08993 * 109.47839 * 299.99931 * 10 9 8 35 35 H 1.09000 * 109.47611 * 59.99933 * 11 10 9 36 36 H 0.97002 * 119.99803 * 179.97438 * 15 14 12 37 37 H 1.08996 * 109.47452 * 300.00000 * 20 11 10 38 38 H 1.09000 * 109.47054 * 180.02562 * 20 11 10 39 39 H 1.09002 * 109.47153 * 299.99508 * 21 8 7 40 40 H 1.08996 * 109.46952 * 59.99680 * 21 8 7 41 41 H 1.08997 * 109.50082 * 178.55305 * 22 7 6 42 42 H 1.09000 * 109.50859 * 298.68024 * 22 7 6 43 43 H 1.08998 * 109.50794 * 63.08005 * 23 22 7 44 44 H 1.09000 * 109.50273 * 183.21789 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3052 0.0006 5 1 1.7600 -2.0141 0.6601 6 6 2.3038 -1.8711 -1.4213 7 7 3.1052 -3.1036 -1.4284 8 6 3.1251 -3.7108 -2.7659 9 6 3.7570 -5.1019 -2.6851 10 6 3.7771 -5.7345 -4.0780 11 6 4.5971 -4.8562 -5.0252 12 6 4.6174 -5.4797 -6.3971 13 1 4.2193 -4.9379 -7.2423 14 6 5.1443 -6.7415 -6.5732 15 7 5.6288 -7.4013 -5.5438 16 14 5.1689 -7.5146 -8.2735 17 1 6.4369 -7.1598 -8.9602 18 1 5.0705 -8.9910 -8.1475 19 1 4.0190 -7.0075 -9.0644 20 6 3.9652 -3.4652 -5.1060 21 6 3.9453 -2.8323 -3.7126 22 6 4.4697 -2.8405 -0.9488 23 6 4.4047 -2.2650 0.4684 24 8 3.5963 -1.0852 0.4617 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 2.7559 -1.1392 -2.0907 29 1 1.2905 -2.0938 -1.7554 30 1 2.1054 -3.7962 -3.1415 31 1 4.7766 -5.0165 -2.3095 32 1 3.1726 -5.7277 -2.0106 33 1 4.2269 -6.7257 -4.0203 34 1 2.7574 -5.8200 -4.4531 35 1 5.6169 -4.7708 -4.6502 36 1 5.9991 -8.2893 -5.6676 37 1 2.9454 -3.5506 -5.4812 38 1 4.5491 -2.8396 -5.7812 39 1 3.4952 -1.8412 -3.7702 40 1 4.9650 -2.7469 -3.3371 41 1 5.0373 -3.7710 -0.9381 42 1 4.9564 -2.1242 -1.6106 43 1 3.9667 -3.0024 1.1410 44 1 5.4104 -2.0151 0.8062 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173341522.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:34 Heat of formation + Delta-G solvation = -90.120827 kcal Electronic energy + Delta-G solvation = -23165.585419 eV Core-core repulsion = 19889.436188 eV Total energy + Delta-G solvation = -3276.149231 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.49181 -39.04438 -37.53433 -34.92893 -32.48736 -32.11126 -30.05301 -29.91387 -29.05338 -26.58278 -24.72490 -23.99355 -22.13841 -21.38469 -19.89096 -19.84611 -18.50934 -16.86649 -16.59508 -16.33103 -15.96140 -15.31029 -14.85373 -14.64883 -14.54822 -14.48042 -14.00506 -13.90082 -13.33695 -13.15931 -12.73476 -12.51183 -12.41022 -12.23454 -11.89888 -11.78001 -11.43551 -11.32850 -11.08287 -10.87771 -10.73155 -10.50100 -10.37117 -10.15207 -9.95065 -9.81301 -9.59090 -9.39514 -8.93932 -8.75354 -8.30015 -8.09959 -5.98380 -4.04403 1.66663 3.21085 3.29757 3.36741 3.39852 3.81238 4.29093 4.43788 4.66857 4.74736 4.88435 4.99034 5.05442 5.11217 5.19591 5.25907 5.31191 5.36834 5.43923 5.50596 5.61144 5.65492 5.76650 5.83785 5.92537 6.05747 6.22004 6.34820 6.43881 6.48451 6.68304 6.72820 6.80840 6.89429 7.03974 7.15066 7.21163 7.26666 7.30940 7.51254 7.75110 8.01173 8.15640 8.47138 8.99610 9.60328 11.07179 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.036166 B = 0.003634 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.026262 B = 7703.863454 C = 8016.999086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.361 3.639 3 O -0.438 6.438 4 C 0.045 3.955 5 H 0.093 0.907 6 C 0.030 3.970 7 N -0.529 5.529 8 C 0.089 3.911 9 C -0.104 4.104 10 C -0.108 4.108 11 C 0.049 3.951 12 C -0.513 4.513 13 H 0.053 0.947 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.888 3.112 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.103 4.103 21 C -0.147 4.147 22 C 0.009 3.991 23 C 0.064 3.936 24 O -0.369 6.369 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.049 0.951 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.094 0.906 34 H 0.033 0.967 35 H 0.023 0.977 36 H 0.259 0.741 37 H 0.047 0.953 38 H 0.045 0.955 39 H 0.042 0.958 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.050 0.950 43 H 0.060 0.940 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.606 9.224 12.359 17.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.234 3.766 3 O -0.309 6.309 4 C -0.014 4.014 5 H 0.111 0.889 6 C -0.099 4.099 7 N -0.253 5.253 8 C -0.018 4.018 9 C -0.142 4.142 10 C -0.147 4.147 11 C 0.030 3.970 12 C -0.551 4.551 13 H 0.071 0.929 14 C -0.140 4.140 15 N -0.529 5.529 16 Si 0.717 3.283 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.142 4.142 21 C -0.186 4.186 22 C -0.119 4.119 23 C -0.013 4.013 24 O -0.287 6.287 25 H 0.104 0.896 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.067 0.933 29 H 0.107 0.893 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.052 0.948 35 H 0.041 0.959 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.113 0.887 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.352 9.461 12.796 17.972 hybrid contribution 0.332 -0.302 -1.613 1.675 sum -8.020 9.159 11.183 16.531 Atomic orbital electron populations 1.22217 0.93023 1.05155 1.05124 1.24535 0.91876 0.89212 0.70997 1.90424 1.71910 1.34680 1.33880 1.22701 0.85584 0.96391 0.96773 0.88932 1.22531 1.00044 0.92617 0.94694 1.62564 1.12111 1.23811 1.26770 1.21851 0.99808 0.95201 0.84964 1.21657 0.99253 0.93368 0.99961 1.21610 0.99223 1.02636 0.91184 1.18653 0.94507 0.88953 0.94843 1.21231 1.39333 1.00816 0.93757 0.92880 1.24958 0.95276 0.97227 0.96505 1.69871 1.40818 1.12930 1.29325 0.86652 0.78354 0.78426 0.84904 1.20793 1.21261 1.19999 1.21571 1.00350 0.99071 0.93178 1.22216 1.00133 0.97821 0.98413 1.22883 0.91181 1.01776 0.96054 1.22769 0.95422 0.86950 0.96150 1.88058 1.21513 1.33148 1.86021 0.89562 0.88597 0.88574 0.93318 0.89258 0.90368 0.92918 0.93087 0.88820 0.94784 0.95867 0.93091 0.93439 0.93610 0.93887 0.92244 0.88730 0.93196 0.92197 0.88231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.28 10.33 36.01 0.37 -0.90 16 2 C 0.36 3.96 6.53 -29.03 -0.19 3.78 16 3 O -0.44 -6.63 17.36 -13.09 -0.23 -6.86 16 4 C 0.04 0.51 3.06 -27.83 -0.09 0.43 16 5 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 6 C 0.03 0.37 4.65 -3.71 -0.02 0.35 16 7 N -0.53 -7.34 4.68 -226.33 -1.06 -8.40 16 8 C 0.09 1.43 2.19 -67.71 -0.15 1.28 16 9 C -0.10 -1.91 5.13 -26.73 -0.14 -2.05 16 10 C -0.11 -2.43 4.98 -26.73 -0.13 -2.56 16 11 C 0.05 1.18 2.10 -91.77 -0.19 0.98 16 12 C -0.51 -13.89 8.56 -34.44 -0.29 -14.18 16 13 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 14 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 15 N -0.89 -24.99 11.32 55.43 0.63 -24.36 16 16 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 C -0.10 -2.11 5.15 -26.71 -0.14 -2.25 16 21 C -0.15 -2.53 4.45 -26.71 -0.12 -2.65 16 22 C 0.01 0.12 4.80 -3.71 -0.02 0.11 16 23 C 0.06 0.75 7.01 37.21 0.26 1.01 16 24 O -0.37 -5.11 10.08 -54.32 -0.55 -5.66 16 25 H 0.09 0.39 8.00 -51.93 -0.42 -0.02 16 26 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.68 6.72 -51.93 -0.35 0.33 16 29 H 0.09 0.92 8.09 -51.93 -0.42 0.50 16 30 H 0.08 1.26 8.04 -51.93 -0.42 0.84 16 31 H 0.05 0.98 6.51 -51.93 -0.34 0.64 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.04 0.69 6.73 -51.93 -0.35 0.34 16 40 H 0.06 1.05 6.38 -51.93 -0.33 0.72 16 41 H 0.09 1.29 6.37 -51.93 -0.33 0.96 16 42 H 0.05 0.74 6.37 -51.93 -0.33 0.40 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 335.29 15.07 5.05 5.05 Total: -1.00 -30.45 335.29 -9.48 -39.93 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -7.37 Total: -0.69 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: -0.93 Total: -15.08 kcal Atomic # 7 Polarization: -32.32 SS G_CDS: -0.43 Total: -32.76 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: -0.77 Total: -12.52 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.45 -9.48 -39.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173341522.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.195 kcal (2) G-P(sol) polarization free energy of solvation -30.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds