Wall clock time and date at job start Tue Mar 31 2020 05:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20763 * 119.99860 * 2 1 4 4 C 1.50694 * 120.00055 * 179.97438 * 2 1 3 5 5 H 1.09006 * 109.50699 * 44.91790 * 4 2 1 6 6 C 1.53098 * 109.54516 * 284.81050 * 4 2 1 7 7 N 1.47019 * 109.26063 * 183.19739 * 6 4 2 8 8 C 1.46896 * 110.99927 * 182.39123 * 7 6 4 9 9 C 1.52997 * 109.46848 * 182.40707 * 8 7 6 10 10 C 1.52999 * 109.47317 * 179.97438 * 9 8 7 11 11 C 1.53005 * 109.47159 * 300.00546 * 10 9 8 12 12 C 1.50699 * 109.47155 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00019 * 239.99808 * 12 11 10 14 14 C 1.37877 * 120.00129 * 59.99523 * 12 11 10 15 15 N 1.31516 * 120.00113 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00167 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47319 * 59.99928 * 16 14 12 18 18 H 1.48503 * 109.47266 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46734 * 299.99975 * 16 14 12 20 20 C 1.52997 * 109.47452 * 59.99536 * 11 10 9 21 21 C 1.53000 * 109.47053 * 302.40421 * 8 7 6 22 22 C 1.47009 * 110.75277 * 58.60823 * 7 6 4 23 23 C 1.53095 * 109.26121 * 301.38968 * 22 7 6 24 24 O 1.43010 * 109.26269 * 56.85015 * 23 22 7 25 25 H 1.09008 * 109.47189 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47687 * 300.00377 * 1 2 3 27 27 H 1.08999 * 109.46951 * 60.00740 * 1 2 3 28 28 H 1.08992 * 109.51169 * 63.25546 * 6 4 2 29 29 H 1.09001 * 109.50595 * 303.12688 * 6 4 2 30 30 H 1.09002 * 109.47220 * 62.40776 * 8 7 6 31 31 H 1.08996 * 109.47853 * 300.00000 * 9 8 7 32 32 H 1.09002 * 109.47153 * 60.00028 * 9 8 7 33 33 H 1.09000 * 109.47486 * 180.02562 * 10 9 8 34 34 H 1.09002 * 109.46716 * 60.00091 * 10 9 8 35 35 H 1.09002 * 109.46935 * 299.99411 * 11 10 9 36 36 H 0.96999 * 120.00366 * 179.97438 * 15 14 12 37 37 H 1.08993 * 109.47194 * 179.97438 * 20 11 10 38 38 H 1.09002 * 109.46695 * 59.99734 * 20 11 10 39 39 H 1.08992 * 109.47399 * 300.00238 * 21 8 7 40 40 H 1.09004 * 109.46724 * 60.00724 * 21 8 7 41 41 H 1.09005 * 109.50499 * 61.32761 * 22 7 6 42 42 H 1.08997 * 109.50906 * 181.40614 * 22 7 6 43 43 H 1.09004 * 109.50754 * 176.78776 * 23 22 7 44 44 H 1.08996 * 109.50607 * 296.90811 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2605 -1.3050 0.0006 5 1 1.8124 -1.9844 -0.7246 6 6 2.1972 -1.9324 1.3957 7 7 2.9975 -3.1656 1.4097 8 6 2.9174 -3.8304 2.7171 9 6 3.8083 -5.0742 2.7122 10 6 3.7254 -5.7663 4.0742 11 6 4.1991 -4.8038 5.1651 12 6 4.1169 -5.4853 6.5067 13 1 3.4919 -5.0725 7.2847 14 6 4.8394 -6.6360 6.7409 15 7 5.6009 -7.1386 5.7936 16 14 4.7369 -7.4812 8.4036 17 1 3.3315 -7.8796 8.6706 18 1 5.6019 -8.6883 8.3995 19 1 5.1964 -6.5472 9.4627 20 6 3.3082 -3.5600 5.1700 21 6 3.3909 -2.8681 3.8084 22 6 4.3940 -2.8844 1.0462 23 6 4.4352 -2.2475 -0.3454 24 8 3.6270 -1.0677 -0.3484 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.1619 -2.1675 1.6425 29 1 2.5964 -1.2312 2.1285 30 1 1.8859 -4.1230 2.9133 31 1 3.4711 -5.7597 1.9348 32 1 4.8398 -4.7815 2.5161 33 1 4.3604 -6.6522 4.0709 34 1 2.6939 -6.0589 4.2708 35 1 5.2306 -4.5112 4.9686 36 1 6.1096 -7.9479 5.9585 37 1 3.6454 -2.8746 5.9475 38 1 2.2768 -3.8527 5.3666 39 1 4.4223 -2.5755 3.6122 40 1 2.7561 -1.9820 3.8119 41 1 4.8283 -2.1984 1.7735 42 1 4.9624 -3.8144 1.0386 43 1 5.4632 -1.9852 -0.5953 44 1 4.0504 -2.9542 -1.0806 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173341523.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:36 Heat of formation + Delta-G solvation = -88.915362 kcal Electronic energy + Delta-G solvation = -23203.395668 eV Core-core repulsion = 19927.298710 eV Total energy + Delta-G solvation = -3276.096958 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.49910 -39.05484 -37.53306 -34.92024 -32.48786 -32.14619 -30.14877 -29.83133 -29.02041 -26.57032 -24.74577 -24.01255 -22.07465 -21.44408 -19.88638 -19.83591 -18.49402 -16.85948 -16.63156 -16.31922 -15.94925 -15.29771 -14.83711 -14.65107 -14.52520 -14.48782 -14.03192 -13.91313 -13.34348 -13.17773 -12.72161 -12.50304 -12.40681 -12.25924 -11.90982 -11.77213 -11.41906 -11.28234 -11.06282 -10.86188 -10.75272 -10.55211 -10.38626 -10.16798 -9.90484 -9.80999 -9.58104 -9.40447 -8.92771 -8.77238 -8.30364 -8.09916 -5.98582 -4.04710 1.68425 3.21242 3.31044 3.35939 3.38515 3.81647 4.30067 4.43541 4.68069 4.74814 4.89243 4.99583 5.06079 5.11738 5.21309 5.26633 5.30619 5.36240 5.44575 5.49536 5.62027 5.66212 5.77052 5.83863 5.92829 6.05284 6.18811 6.35103 6.44626 6.45485 6.66279 6.72955 6.81426 6.90230 7.03299 7.14035 7.20621 7.25732 7.32272 7.49937 7.74424 8.00651 8.14947 8.46699 8.99056 9.59970 11.06973 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.035561 B = 0.003691 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.196557 B = 7584.211570 C = 7973.529270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.361 3.639 3 O -0.438 6.438 4 C 0.044 3.956 5 H 0.093 0.907 6 C 0.029 3.971 7 N -0.529 5.529 8 C 0.089 3.911 9 C -0.109 4.109 10 C -0.108 4.108 11 C 0.049 3.951 12 C -0.514 4.514 13 H 0.053 0.947 14 C 0.062 3.938 15 N -0.891 5.891 16 Si 0.889 3.111 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.104 4.104 21 C -0.147 4.147 22 C 0.008 3.992 23 C 0.064 3.936 24 O -0.368 6.368 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.051 0.949 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.034 0.966 35 H 0.023 0.977 36 H 0.260 0.740 37 H 0.045 0.955 38 H 0.047 0.953 39 H 0.056 0.944 40 H 0.045 0.955 41 H 0.048 0.952 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.259 8.629 -12.868 17.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.234 3.766 3 O -0.309 6.309 4 C -0.015 4.015 5 H 0.111 0.889 6 C -0.100 4.100 7 N -0.253 5.253 8 C -0.018 4.018 9 C -0.147 4.147 10 C -0.146 4.146 11 C 0.031 3.969 12 C -0.552 4.552 13 H 0.071 0.929 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.204 1.204 20 C -0.142 4.142 21 C -0.186 4.186 22 C -0.120 4.120 23 C -0.013 4.013 24 O -0.287 6.287 25 H 0.104 0.896 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.108 0.892 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.053 0.947 35 H 0.041 0.959 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.115 0.885 43 H 0.118 0.882 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.927 8.902 -13.313 17.869 hybrid contribution 0.200 -0.366 1.637 1.689 sum -7.727 8.536 -11.676 16.397 Atomic orbital electron populations 1.22218 0.93028 1.05150 1.05133 1.24528 0.91870 0.89216 0.71026 1.90425 1.71902 1.34643 1.33928 1.22693 0.84871 0.96157 0.97788 0.88900 1.22549 1.00072 0.92471 0.94895 1.62585 1.09747 1.21900 1.31042 1.21848 1.00696 0.94494 0.84778 1.21743 0.97999 0.94965 1.00016 1.21610 1.00314 1.01437 0.91262 1.18648 0.94063 0.90038 0.94177 1.21192 1.26760 1.09184 0.98091 0.92916 1.24957 0.95214 0.97171 0.96587 1.69856 1.28903 1.21865 1.32341 0.86711 0.77946 0.78952 0.84685 1.20331 1.21330 1.20384 1.21553 1.00574 0.98651 0.93402 1.22201 1.00534 0.97972 0.97913 1.22900 0.90835 1.01603 0.96671 1.22768 0.95439 0.86778 0.96304 1.88065 1.18637 1.32246 1.89747 0.89567 0.88553 0.88617 0.89242 0.93062 0.90172 0.93038 0.92742 0.88816 0.94733 0.95901 0.93023 0.93605 0.93389 0.92540 0.93639 0.93396 0.88501 0.88238 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.29 10.32 36.01 0.37 -0.92 16 2 C 0.36 3.99 6.56 -29.04 -0.19 3.80 16 3 O -0.44 -6.67 17.31 -13.47 -0.23 -6.91 16 4 C 0.04 0.51 3.06 -27.84 -0.09 0.42 16 5 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 6 C 0.03 0.35 4.39 -3.71 -0.02 0.34 16 7 N -0.53 -7.32 4.77 -226.34 -1.08 -8.40 16 8 C 0.09 1.43 2.35 -67.72 -0.16 1.27 16 9 C -0.11 -1.99 4.77 -26.73 -0.13 -2.12 16 10 C -0.11 -2.42 4.98 -26.73 -0.13 -2.55 16 11 C 0.05 1.18 2.10 -91.77 -0.19 0.99 16 12 C -0.51 -13.90 8.56 -34.44 -0.29 -14.20 16 13 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 14 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 15 N -0.89 -24.99 11.32 55.43 0.63 -24.36 16 16 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 C -0.10 -2.10 5.14 -26.75 -0.14 -2.24 16 21 C -0.15 -2.52 4.49 -26.75 -0.12 -2.64 16 22 C 0.01 0.11 4.86 -3.72 -0.02 0.09 16 23 C 0.06 0.76 7.01 37.21 0.26 1.02 16 24 O -0.37 -5.15 10.05 -54.70 -0.55 -5.70 16 25 H 0.09 0.40 8.00 -51.92 -0.42 -0.01 16 26 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.71 6.40 -51.93 -0.33 0.38 16 30 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.05 1.01 6.27 -51.93 -0.33 0.68 16 33 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 1.01 6.61 -51.93 -0.34 0.67 16 40 H 0.04 0.71 6.42 -51.93 -0.33 0.38 16 41 H 0.05 0.72 6.59 -51.93 -0.34 0.37 16 42 H 0.10 1.32 6.07 -51.93 -0.32 1.00 16 43 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 334.41 15.07 5.04 5.04 Total: -1.00 -30.43 334.41 -9.49 -39.92 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -7.34 Total: -0.48 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: -0.94 Total: -15.16 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: -0.45 Total: -32.76 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -0.78 Total: -12.61 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.43 -9.49 -39.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173341523.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.997 kcal (2) G-P(sol) polarization free energy of solvation -30.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds