Wall clock time and date at job start Tue Mar 31 2020 05:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47065 * 2 1 4 4 C 1.34225 * 117.00150 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00207 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00091 * 179.97438 * 4 3 2 7 7 H 1.08997 * 115.55602 * 31.89886 * 6 4 3 8 8 C 1.53041 * 117.50443 * 177.59787 * 6 4 3 9 9 C 1.52802 * 59.96454 * 107.50476 * 8 6 4 10 10 C 1.53153 * 117.75316 * 107.63539 * 9 8 6 11 11 C 1.53184 * 108.88497 * 199.61671 * 10 9 8 12 12 C 1.52934 * 109.45103 * 303.43213 * 11 10 9 13 13 N 1.46896 * 109.41425 * 183.09196 * 12 11 10 14 14 C 1.46902 * 111.00202 * 84.64078 * 13 12 11 15 15 C 1.50696 * 109.47531 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99972 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00323 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99723 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00137 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47448 * 89.99806 * 19 17 15 21 21 H 1.48499 * 109.46842 * 209.99958 * 19 17 15 22 22 H 1.48500 * 109.46982 * 329.99388 * 19 17 15 23 23 C 1.52949 * 109.82199 * 62.98505 * 12 11 10 24 24 C 1.53154 * 117.74919 * 252.36919 * 9 8 6 25 25 H 1.09001 * 109.47444 * 299.99994 * 1 2 3 26 26 H 1.09000 * 109.47189 * 60.00561 * 1 2 3 27 27 H 1.08999 * 109.46908 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47520 * 239.99512 * 2 1 3 29 29 H 1.09010 * 109.47008 * 119.99462 * 2 1 3 30 30 H 1.09003 * 117.50060 * 214.98411 * 8 6 4 31 31 H 1.08999 * 117.50317 * 0.02562 * 8 6 4 32 32 H 1.09001 * 109.56194 * 319.43316 * 10 9 8 33 33 H 1.08994 * 109.56716 * 79.79267 * 10 9 8 34 34 H 1.08999 * 109.46911 * 183.44349 * 11 10 9 35 35 H 1.08996 * 109.47964 * 63.42805 * 11 10 9 36 36 H 1.09001 * 109.35723 * 302.91546 * 12 11 10 37 37 H 1.00898 * 111.00720 * 208.59517 * 13 12 11 38 38 H 1.09005 * 109.47415 * 300.00668 * 14 13 12 39 39 H 1.09001 * 109.46841 * 60.00225 * 14 13 12 40 40 H 0.96994 * 119.99730 * 179.97438 * 18 17 15 41 41 H 1.09005 * 109.47279 * 177.01882 * 23 12 11 42 42 H 1.08995 * 109.47690 * 57.00978 * 23 12 11 43 43 H 1.08998 * 109.57201 * 280.20316 * 24 9 8 44 44 H 1.09001 * 109.56965 * 40.43838 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9206 2.9375 0.0000 7 1 3.3287 3.6914 0.5189 8 6 5.4440 3.0723 0.0575 9 6 4.6974 3.3802 -1.2396 10 6 4.5822 4.8469 -1.6652 11 6 3.4289 4.9842 -2.6640 12 6 3.6666 4.0464 -3.8484 13 7 2.5992 4.2323 -4.8403 14 6 2.9041 5.3547 -5.7378 15 6 1.7890 5.5148 -6.7387 16 1 0.9386 4.8497 -6.7108 17 6 1.8545 6.5105 -7.6903 18 7 2.8898 7.3208 -7.7241 19 14 0.4719 6.7094 -8.9306 20 1 -0.5508 7.6388 -8.3870 21 1 1.0183 7.2603 -10.1967 22 1 -0.1508 5.3873 -9.1940 23 6 3.6670 2.5943 -3.3682 24 6 4.8279 2.3801 -2.3922 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.8541 3.9148 0.6145 31 1 6.0295 2.1537 0.0954 32 1 4.3833 5.4662 -0.7905 33 1 5.5126 5.1646 -2.1358 34 1 3.3772 6.0132 -3.0200 35 1 2.4911 4.7213 -2.1748 36 1 4.6293 4.2773 -4.3046 37 1 2.4397 3.3843 -5.3633 38 1 3.0025 6.2701 -5.1544 39 1 3.8385 5.1564 -6.2629 40 1 2.9360 8.0210 -8.3937 41 1 3.7838 1.9287 -4.2235 42 1 2.7246 2.3776 -2.8652 43 1 5.7739 2.5403 -2.9093 44 1 4.7942 1.3639 -1.9994 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173597295.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:39 Heat of formation + Delta-G solvation = -85.154719 kcal Electronic energy + Delta-G solvation = -22592.863394 eV Core-core repulsion = 19316.929509 eV Total energy + Delta-G solvation = -3275.933884 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.97445 -39.09975 -36.85420 -35.84094 -33.22742 -31.92086 -31.47308 -30.79192 -27.48005 -25.77117 -24.57269 -22.91942 -22.79842 -21.52137 -20.77798 -20.19040 -18.77911 -17.79210 -16.72114 -16.53022 -16.21943 -15.25330 -14.69033 -14.66471 -14.29815 -14.13726 -13.75159 -13.40557 -13.19282 -13.02907 -12.80255 -12.53154 -12.18528 -12.11121 -12.01760 -11.84366 -11.73572 -11.49760 -11.28074 -10.90528 -10.87301 -10.69253 -10.64385 -10.61316 -10.37321 -10.12155 -10.00482 -9.76264 -9.55532 -9.11151 -8.45739 -7.24210 -6.01409 -4.02962 2.00840 2.49568 3.33267 3.38898 3.42767 3.60523 4.42283 4.44492 4.49993 4.57780 4.72911 4.76300 4.82777 4.94502 5.05650 5.12341 5.25540 5.34556 5.42085 5.48984 5.52549 5.57689 5.60154 5.68143 5.72353 5.79733 5.83436 5.91161 5.99439 6.11367 6.14140 6.23477 6.35725 6.40765 6.49586 6.69944 6.81720 7.31454 7.45955 7.68925 7.82259 8.16995 8.45325 8.66375 9.06860 9.61917 11.09737 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020113 B = 0.003755 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.817884 B = 7455.596853 C = 8408.880114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.062 3.938 3 O -0.351 6.351 4 C 0.499 3.501 5 O -0.513 6.513 6 C -0.168 4.168 7 H 0.133 0.867 8 C -0.142 4.142 9 C -0.074 4.074 10 C -0.083 4.083 11 C -0.103 4.103 12 C 0.089 3.911 13 N -0.687 5.687 14 C 0.195 3.805 15 C -0.513 4.513 16 H 0.062 0.938 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.898 3.102 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.117 4.117 24 C -0.093 4.093 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.034 0.966 37 H 0.328 0.672 38 H 0.028 0.972 39 H -0.015 1.015 40 H 0.261 0.739 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.074 0.926 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.021 -11.270 17.492 20.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.268 6.268 4 C 0.343 3.657 5 O -0.402 6.402 6 C -0.187 4.187 7 H 0.151 0.849 8 C -0.179 4.179 9 C -0.074 4.074 10 C -0.121 4.121 11 C -0.141 4.141 12 C -0.022 4.022 13 N -0.318 5.318 14 C 0.068 3.932 15 C -0.552 4.552 16 H 0.080 0.920 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.726 3.274 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.154 4.154 24 C -0.131 4.131 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.052 0.948 37 H 0.145 0.855 38 H 0.046 0.954 39 H 0.002 0.998 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.875 -11.046 17.793 21.027 hybrid contribution -0.066 -0.320 -1.190 1.234 sum 1.809 -11.366 16.603 20.202 Atomic orbital electron populations 1.21813 0.92493 1.02913 1.03838 1.23029 0.95527 0.80174 1.02417 1.86518 1.24259 1.32261 1.83713 1.22555 0.80484 0.91107 0.71515 1.90628 1.60568 1.42926 1.46086 1.21935 0.96069 0.93110 1.07593 0.84909 1.23215 0.90442 1.04070 1.00174 1.21692 0.99556 0.97522 0.88652 1.21276 1.00218 0.91143 0.99448 1.21493 0.97281 1.00479 0.94897 1.21383 0.94005 0.93091 0.93680 1.60662 1.42210 1.09346 1.19550 1.19582 0.94966 0.88774 0.89866 1.21212 1.05602 1.15282 1.13088 0.92028 1.24987 0.96021 0.95794 0.97777 1.69965 1.29385 1.18917 1.35551 0.86497 0.82060 0.78334 0.80496 1.20627 1.21337 1.19881 1.21705 0.98216 0.97126 0.98397 1.21318 0.99671 0.97438 0.94657 0.91530 0.91038 0.90300 0.91180 0.91462 0.87350 0.87422 0.91521 0.90815 0.91267 0.91573 0.94830 0.85521 0.95372 0.99764 0.92964 0.92126 0.91561 0.90767 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.29 37.16 0.38 -0.82 16 2 C 0.06 0.63 6.19 37.16 0.23 0.86 16 3 O -0.35 -4.42 10.22 -39.24 -0.40 -4.82 16 4 C 0.50 6.54 6.73 36.01 0.24 6.78 16 5 O -0.51 -7.59 14.69 -18.75 -0.28 -7.87 16 6 C -0.17 -1.91 6.00 -91.83 -0.55 -2.46 16 7 H 0.13 1.32 8.14 -51.93 -0.42 0.90 16 8 C -0.14 -1.43 9.50 -26.81 -0.25 -1.68 16 9 C -0.07 -0.88 1.97 -154.53 -0.30 -1.18 16 10 C -0.08 -1.02 5.67 -26.56 -0.15 -1.18 16 11 C -0.10 -1.65 5.44 -26.67 -0.15 -1.80 16 12 C 0.09 1.57 2.41 -67.78 -0.16 1.40 16 13 N -0.69 -14.78 6.29 -108.06 -0.68 -15.46 16 14 C 0.19 5.12 5.24 -4.98 -0.03 5.10 16 15 C -0.51 -14.64 9.32 -34.44 -0.32 -14.96 16 16 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 19 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 C -0.12 -1.74 5.23 -26.67 -0.14 -1.88 16 24 C -0.09 -1.22 5.28 -26.56 -0.14 -1.36 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.72 8.13 -51.93 -0.42 0.29 16 29 H 0.07 0.63 8.13 -51.92 -0.42 0.20 16 30 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.11 1.14 7.67 -51.93 -0.40 0.74 16 32 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 1.24 7.36 -51.93 -0.38 0.86 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.03 0.63 7.80 -51.93 -0.40 0.23 16 37 H 0.33 6.82 8.29 -39.29 -0.33 6.49 16 38 H 0.03 0.79 7.36 -51.93 -0.38 0.41 16 39 H -0.02 -0.43 8.05 -51.93 -0.42 -0.85 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.06 0.89 8.06 -51.93 -0.42 0.47 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.07 0.96 6.03 -51.93 -0.31 0.64 16 LS Contribution 354.46 15.07 5.34 5.34 Total: -1.00 -31.44 354.46 -9.40 -40.84 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -7.66 Total: 3.09 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -1.44 Total: -11.68 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.06 Total: -41.68 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -0.68 Total: -12.69 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.44 -9.40 -40.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173597295.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.314 kcal (2) G-P(sol) polarization free energy of solvation -31.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds