Wall clock time and date at job start Tue Mar 31 2020 05:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47065 * 2 1 4 4 C 1.34225 * 117.00150 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00207 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00091 * 179.97438 * 4 3 2 7 7 H 1.08997 * 115.55602 * 31.89886 * 6 4 3 8 8 C 1.53041 * 117.50443 * 177.59787 * 6 4 3 9 9 C 1.52802 * 59.96454 * 107.50476 * 8 6 4 10 10 C 1.53153 * 117.75316 * 107.63539 * 9 8 6 11 11 C 1.53184 * 108.88497 * 199.61671 * 10 9 8 12 12 C 1.52934 * 109.45103 * 303.43213 * 11 10 9 13 13 N 1.46896 * 109.41425 * 183.09196 * 12 11 10 14 14 C 1.46902 * 111.00202 * 84.64078 * 13 12 11 15 15 C 1.50696 * 109.47531 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99972 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00323 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99723 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00137 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47448 * 89.99806 * 19 17 15 21 21 H 1.48499 * 109.46842 * 209.99958 * 19 17 15 22 22 H 1.48500 * 109.46982 * 329.99388 * 19 17 15 23 23 C 1.52949 * 109.82199 * 62.98505 * 12 11 10 24 24 C 1.53154 * 117.74919 * 252.36919 * 9 8 6 25 25 H 1.09001 * 109.47444 * 299.99994 * 1 2 3 26 26 H 1.09000 * 109.47189 * 60.00561 * 1 2 3 27 27 H 1.08999 * 109.46908 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47520 * 239.99512 * 2 1 3 29 29 H 1.09010 * 109.47008 * 119.99462 * 2 1 3 30 30 H 1.09003 * 117.50060 * 214.98411 * 8 6 4 31 31 H 1.08999 * 117.50317 * 0.02562 * 8 6 4 32 32 H 1.09001 * 109.56194 * 319.43316 * 10 9 8 33 33 H 1.08994 * 109.56716 * 79.79267 * 10 9 8 34 34 H 1.08999 * 109.46911 * 183.44349 * 11 10 9 35 35 H 1.08996 * 109.47964 * 63.42805 * 11 10 9 36 36 H 1.09001 * 109.35723 * 302.91546 * 12 11 10 37 37 H 1.00898 * 111.00720 * 208.59517 * 13 12 11 38 38 H 1.09005 * 109.47415 * 300.00668 * 14 13 12 39 39 H 1.09001 * 109.46841 * 60.00225 * 14 13 12 40 40 H 0.96994 * 119.99730 * 179.97438 * 18 17 15 41 41 H 1.09005 * 109.47279 * 177.01882 * 23 12 11 42 42 H 1.08995 * 109.47690 * 57.00978 * 23 12 11 43 43 H 1.08998 * 109.57201 * 280.20316 * 24 9 8 44 44 H 1.09001 * 109.56965 * 40.43838 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9206 2.9375 0.0000 7 1 3.3287 3.6914 0.5189 8 6 5.4440 3.0723 0.0575 9 6 4.6974 3.3802 -1.2396 10 6 4.5822 4.8469 -1.6652 11 6 3.4289 4.9842 -2.6640 12 6 3.6666 4.0464 -3.8484 13 7 2.5992 4.2323 -4.8403 14 6 2.9041 5.3547 -5.7378 15 6 1.7890 5.5148 -6.7387 16 1 0.9386 4.8497 -6.7108 17 6 1.8545 6.5105 -7.6903 18 7 2.8898 7.3208 -7.7241 19 14 0.4719 6.7094 -8.9306 20 1 -0.5508 7.6388 -8.3870 21 1 1.0183 7.2603 -10.1967 22 1 -0.1508 5.3873 -9.1940 23 6 3.6670 2.5943 -3.3682 24 6 4.8279 2.3801 -2.3922 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.8541 3.9148 0.6145 31 1 6.0295 2.1537 0.0954 32 1 4.3833 5.4662 -0.7905 33 1 5.5126 5.1646 -2.1358 34 1 3.3772 6.0132 -3.0200 35 1 2.4911 4.7213 -2.1748 36 1 4.6293 4.2773 -4.3046 37 1 2.4397 3.3843 -5.3633 38 1 3.0025 6.2701 -5.1544 39 1 3.8385 5.1564 -6.2629 40 1 2.9360 8.0210 -8.3937 41 1 3.7838 1.9287 -4.2235 42 1 2.7246 2.3776 -2.8652 43 1 5.7739 2.5403 -2.9093 44 1 4.7942 1.3639 -1.9994 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173597295.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:39 Heat of formation + Delta-G solvation = -103.474131 kcal Electronic energy + Delta-G solvation = -22593.657783 eV Core-core repulsion = 19316.929509 eV Total energy + Delta-G solvation = -3276.728274 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.95318 -40.17538 -38.02224 -37.12282 -35.13225 -33.27931 -32.59771 -31.95312 -29.17055 -27.09798 -25.85567 -24.21862 -23.61380 -23.30603 -21.72141 -21.54495 -19.87378 -18.78075 -18.53609 -17.62325 -17.31939 -16.68193 -16.44832 -16.15751 -15.41874 -15.22417 -15.03259 -14.62979 -14.42178 -14.29358 -13.90512 -13.64959 -13.61593 -13.32726 -13.22363 -13.19968 -12.87179 -12.72047 -12.53637 -12.46981 -12.43978 -12.08233 -11.99473 -11.78861 -11.63503 -11.52807 -11.28967 -11.07155 -10.94284 -10.69432 -10.64740 -9.09293 -8.22059 -6.33108 1.02778 1.41176 1.43062 1.54195 1.64412 2.40314 2.70787 3.11139 3.48138 3.50229 3.58003 3.77396 3.83650 3.88924 3.99440 4.06705 4.16605 4.26522 4.32624 4.35472 4.46832 4.53808 4.71119 4.77791 4.84562 4.85518 4.89288 4.90989 4.95598 5.04135 5.11598 5.12501 5.15418 5.18885 5.26743 5.30007 5.40622 5.47055 5.48976 5.65322 6.05439 6.48929 6.72358 6.75303 6.90749 7.37934 8.89569 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020113 B = 0.003755 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.817884 B = 7455.596853 C = 8408.880114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.361 6.361 4 C 0.495 3.505 5 O -0.535 6.535 6 C -0.173 4.173 7 H 0.151 0.849 8 C -0.119 4.119 9 C -0.086 4.086 10 C -0.072 4.072 11 C -0.099 4.099 12 C 0.087 3.913 13 N -0.686 5.686 14 C 0.212 3.788 15 C -0.537 4.537 16 H 0.063 0.937 17 C 0.002 3.998 18 N -0.934 5.934 19 Si 0.972 3.028 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.264 1.264 23 C -0.106 4.106 24 C -0.088 4.088 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.101 0.899 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.138 0.862 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.042 0.958 35 H 0.063 0.937 36 H 0.020 0.980 37 H 0.331 0.669 38 H 0.003 0.997 39 H -0.044 1.044 40 H 0.265 0.735 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.078 0.922 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.469 -11.673 18.572 21.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.019 4.019 3 O -0.278 6.278 4 C 0.341 3.659 5 O -0.426 6.426 6 C -0.191 4.191 7 H 0.168 0.832 8 C -0.155 4.155 9 C -0.086 4.086 10 C -0.110 4.110 11 C -0.138 4.138 12 C -0.023 4.023 13 N -0.317 5.317 14 C 0.084 3.916 15 C -0.575 4.575 16 H 0.081 0.919 17 C -0.196 4.196 18 N -0.574 5.574 19 Si 0.797 3.203 20 H -0.198 1.198 21 H -0.206 1.206 22 H -0.188 1.188 23 C -0.143 4.143 24 C -0.125 4.125 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.120 0.880 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.156 0.844 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.038 0.962 37 H 0.149 0.851 38 H 0.021 0.979 39 H -0.026 1.026 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.097 0.903 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.316 -11.465 18.893 22.139 hybrid contribution 0.111 -0.242 -1.503 1.526 sum 1.427 -11.707 17.390 21.012 Atomic orbital electron populations 1.21830 0.90756 1.04344 1.03575 1.23268 0.96933 0.79212 1.02482 1.86522 1.24142 1.33682 1.83442 1.22932 0.80513 0.91614 0.70850 1.90612 1.60988 1.43793 1.47216 1.22104 0.97284 0.92544 1.07203 0.83179 1.23312 0.89467 1.04767 0.97995 1.21563 1.01634 0.96551 0.88884 1.21193 0.98444 0.92137 0.99231 1.21430 0.99085 0.98215 0.95040 1.21513 0.92010 0.95578 0.93174 1.60596 1.43841 1.08291 1.18941 1.19200 0.93308 0.89406 0.89642 1.21567 1.06151 1.15748 1.14025 0.91911 1.25944 0.98683 0.95190 0.99801 1.70091 1.31389 1.19456 1.36464 0.85339 0.78615 0.78716 0.77664 1.19796 1.20644 1.18816 1.21576 0.99040 0.94857 0.98875 1.21235 0.98781 0.97785 0.94732 0.91021 0.91984 0.88047 0.91779 0.90766 0.84425 0.87861 0.88874 0.90597 0.93954 0.91840 0.96223 0.85150 0.97931 1.02612 0.92619 0.92144 0.92072 0.90302 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 10.29 71.98 0.74 -1.37 16 2 C 0.05 1.05 6.19 71.98 0.45 1.49 16 3 O -0.36 -8.77 10.22 -51.37 -0.53 -9.29 16 4 C 0.50 12.35 6.73 71.24 0.48 12.83 16 5 O -0.54 -15.33 14.69 21.96 0.32 -15.01 16 6 C -0.17 -3.52 6.00 -11.58 -0.07 -3.59 16 7 H 0.15 2.53 8.14 -2.39 -0.02 2.51 16 8 C -0.12 -2.02 9.50 30.54 0.29 -1.73 16 9 C -0.09 -1.87 1.97 -52.20 -0.10 -1.97 16 10 C -0.07 -1.66 5.67 30.71 0.17 -1.49 16 11 C -0.10 -3.20 5.44 30.63 0.17 -3.03 16 12 C 0.09 3.14 2.41 44.88 0.11 3.24 16 13 N -0.69 -30.39 6.29 -495.78 -3.12 -33.51 16 14 C 0.21 11.62 5.24 85.56 0.45 12.07 16 15 C -0.54 -31.18 9.32 25.60 0.24 -30.94 16 16 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 17 C 0.00 0.12 5.46 84.65 0.46 0.58 16 18 N -0.93 -56.95 13.29 21.45 0.28 -56.67 16 19 Si 0.97 44.69 29.54 68.60 2.03 46.71 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 23 C -0.11 -3.14 5.23 30.64 0.16 -2.98 16 24 C -0.09 -2.20 5.28 30.70 0.16 -2.04 16 25 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 29 H 0.07 1.31 8.13 -2.38 -0.02 1.29 16 30 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.10 1.92 7.67 -2.39 -0.02 1.91 16 32 H 0.09 1.68 8.09 -2.39 -0.02 1.66 16 33 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.04 1.57 7.36 -2.39 -0.02 1.55 16 35 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.02 0.77 7.80 -2.39 -0.02 0.75 16 37 H 0.33 14.11 8.29 -89.70 -0.74 13.36 16 38 H 0.00 0.15 7.36 -2.38 -0.02 0.14 16 39 H -0.04 -2.59 8.05 -2.39 -0.02 -2.61 16 40 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 41 H 0.06 1.78 8.06 -2.38 -0.02 1.76 16 42 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.07 1.78 6.03 -2.39 -0.01 1.76 16 Total: -1.00 -68.65 354.46 2.92 -65.73 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.23 Total: 20.97 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: 3.70 Total: -18.93 kcal Atomic # 7 Polarization: -87.34 SS G_CDS: -2.84 Total: -90.18 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.20 Total: -24.30 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -68.65 2.92 -65.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173597295.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.745 kcal (2) G-P(sol) polarization free energy of solvation -68.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds