Wall clock time and date at job start Tue Mar 31 2020 05:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45203 * 109.47218 * 2 1 4 4 C 1.34222 * 117.00047 * 180.02562 * 3 2 1 5 5 O 1.20835 * 120.00122 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99810 * 180.02562 * 4 3 2 7 7 H 1.08993 * 115.56697 * 304.88924 * 6 4 3 8 8 C 1.53028 * 117.50025 * 159.17486 * 6 4 3 9 9 C 1.52808 * 59.97084 * 252.52226 * 8 6 4 10 10 C 1.53157 * 117.74466 * 107.63007 * 9 8 6 11 11 C 1.53178 * 108.88083 * 199.62498 * 10 9 8 12 12 C 1.52940 * 109.45408 * 303.43971 * 11 10 9 13 13 N 1.46502 * 109.41069 * 183.09226 * 12 11 10 14 14 C 1.46497 * 119.99760 * 299.84613 * 13 12 11 15 15 C 1.36934 * 120.00096 * 119.85239 * 13 12 11 16 16 H 1.08002 * 120.00129 * 38.91710 * 15 13 12 17 17 C 1.38816 * 119.99989 * 218.90595 * 15 13 12 18 18 N 1.31621 * 119.99589 * 26.56715 * 17 15 13 19 19 Si 1.86794 * 120.00160 * 206.28554 * 17 15 13 20 20 H 1.48497 * 109.47299 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47294 * 120.00762 * 19 17 15 22 22 H 1.48508 * 109.47273 * 240.00240 * 19 17 15 23 23 C 1.52938 * 109.77196 * 63.01555 * 12 11 10 24 24 C 1.53144 * 117.75598 * 252.37207 * 9 8 6 25 25 H 1.08997 * 109.47434 * 299.99296 * 1 2 3 26 26 H 1.09001 * 109.47496 * 60.00127 * 1 2 3 27 27 H 1.09002 * 109.47312 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46767 * 240.00139 * 2 1 3 29 29 H 1.08993 * 109.47101 * 120.00371 * 2 1 3 30 30 H 1.09006 * 117.50183 * 145.04342 * 8 6 4 31 31 H 1.08997 * 117.50885 * 0.02562 * 8 6 4 32 32 H 1.09000 * 109.56709 * 79.80696 * 10 9 8 33 33 H 1.09000 * 109.66592 * 319.49964 * 10 9 8 34 34 H 1.08995 * 109.47830 * 183.44053 * 11 10 9 35 35 H 1.09006 * 109.47280 * 63.42973 * 11 10 9 36 36 H 1.09006 * 109.41097 * 302.94038 * 12 11 10 37 37 H 1.08998 * 109.47758 * 275.30859 * 14 13 12 38 38 H 1.09006 * 109.47454 * 35.30806 * 14 13 12 39 39 H 1.09005 * 109.47357 * 155.30494 * 14 13 12 40 40 H 0.97002 * 120.00080 * 5.02517 * 18 17 15 41 41 H 1.08997 * 109.47301 * 56.97624 * 23 12 11 42 42 H 1.08994 * 109.47791 * 176.99031 * 23 12 11 43 43 H 1.08998 * 109.56887 * 280.19923 * 24 9 8 44 44 H 1.09000 * 109.56738 * 40.43470 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9206 2.9374 0.0000 7 1 3.5803 3.5875 -0.8059 8 6 5.3633 3.1052 0.4820 9 6 4.2046 3.5834 1.3559 10 6 3.8775 2.7719 2.6130 11 6 2.4474 3.0973 3.0549 12 6 2.3136 4.6044 3.2777 13 7 0.9675 4.9061 3.7710 14 6 -0.2035 4.5647 2.9596 15 6 0.8039 5.5071 4.9905 16 1 1.4854 6.2834 5.3057 17 6 -0.2380 5.1188 5.8215 18 7 -0.7317 3.9019 5.7330 19 14 -0.9341 6.3206 7.0706 20 1 -0.2059 7.6112 6.9748 21 1 -2.3758 6.5432 6.7933 22 1 -0.7734 5.7625 8.4374 23 6 2.5502 5.3451 1.9607 24 6 3.9843 5.0934 1.4846 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 5.9722 3.8658 -0.0070 31 1 5.8960 2.2084 0.7983 32 1 4.5743 3.0350 3.4088 33 1 3.9586 1.7073 2.3937 34 1 2.2255 2.5715 3.9835 35 1 1.7473 2.7807 2.2817 36 1 3.0500 4.9287 4.0131 37 1 -0.3950 5.3639 2.2436 38 1 -0.0156 3.6342 2.4237 39 1 -1.0713 4.4419 3.6076 40 1 -0.3210 3.2538 5.1395 41 1 1.8480 4.9838 1.2094 42 1 2.4012 6.4140 2.1131 43 1 4.6879 5.5046 2.2084 44 1 4.1378 5.5686 0.5157 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173618957.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:42 Heat of formation + Delta-G solvation = -62.025673 kcal Electronic energy + Delta-G solvation = -23584.969545 eV Core-core repulsion = 20310.038612 eV Total energy + Delta-G solvation = -3274.930934 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.82209 -38.94144 -36.77286 -35.94923 -33.32614 -31.73019 -30.57195 -30.40421 -26.76412 -25.88660 -25.05375 -22.76495 -22.45039 -22.19044 -20.66328 -19.77905 -18.48975 -17.54861 -17.19854 -16.63101 -16.23299 -15.25082 -14.55938 -14.08503 -13.94085 -13.80983 -13.53448 -13.46736 -13.16742 -12.89417 -12.71615 -12.42695 -12.07422 -11.99073 -11.92919 -11.88355 -11.59788 -11.26987 -10.97331 -10.78225 -10.65772 -10.57507 -10.51282 -10.47587 -10.12106 -10.07742 -9.78284 -9.72638 -9.57410 -9.23936 -8.27419 -6.71371 -5.98055 -3.32096 2.16339 2.61047 3.52185 3.54573 3.65495 3.68923 4.53782 4.60061 4.61346 4.71061 4.86488 4.91293 4.96864 5.07538 5.19298 5.33806 5.43700 5.48520 5.57811 5.64724 5.66810 5.69813 5.73669 5.86315 5.88800 5.92904 5.97948 6.18849 6.25206 6.27905 6.30548 6.45381 6.47219 6.58279 6.69859 6.72872 6.86011 7.10706 7.14289 7.28668 7.79472 8.18693 8.65133 9.22383 9.88495 10.38192 11.20208 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019140 B = 0.005244 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.542365 B = 5338.483051 C = 6299.040686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.063 3.937 3 O -0.347 6.347 4 C 0.501 3.499 5 O -0.515 6.515 6 C -0.166 4.166 7 H 0.135 0.865 8 C -0.145 4.145 9 C -0.077 4.077 10 C -0.086 4.086 11 C -0.130 4.130 12 C 0.177 3.823 13 N -0.594 5.594 14 C 0.119 3.881 15 C -0.354 4.354 16 H 0.048 0.952 17 C -0.019 4.019 18 N -0.905 5.905 19 Si 1.067 2.933 20 H -0.291 1.291 21 H -0.290 1.290 22 H -0.294 1.294 23 C -0.126 4.126 24 C -0.078 4.078 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.061 0.939 37 H -0.004 1.004 38 H 0.019 0.981 39 H 0.062 0.938 40 H 0.270 0.730 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.684 -3.525 -12.532 15.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.263 6.263 4 C 0.344 3.656 5 O -0.404 6.404 6 C -0.185 4.185 7 H 0.152 0.848 8 C -0.182 4.182 9 C -0.077 4.077 10 C -0.124 4.124 11 C -0.169 4.169 12 C 0.070 3.930 13 N -0.317 5.317 14 C -0.026 4.026 15 C -0.483 4.483 16 H 0.066 0.934 17 C -0.222 4.222 18 N -0.544 5.544 19 Si 0.897 3.103 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.221 1.221 23 C -0.166 4.166 24 C -0.116 4.116 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.014 0.986 38 H 0.037 0.963 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.654 -3.619 -11.354 13.649 hybrid contribution 1.167 -0.527 -1.348 1.859 sum 7.821 -4.147 -12.702 15.482 Atomic orbital electron populations 1.21812 0.92403 1.02886 1.03981 1.23027 0.95634 0.80198 1.02251 1.86553 1.24142 1.32183 1.83468 1.22577 0.80581 0.91076 0.71323 1.90633 1.60719 1.42908 1.46158 1.21910 1.01030 0.92858 1.02680 0.84760 1.23195 0.89283 1.03537 1.02137 1.21746 0.99624 0.96531 0.89832 1.21261 0.98943 0.97305 0.94867 1.22079 0.93991 0.99904 1.00926 1.20419 0.88857 0.90765 0.92963 1.43871 0.99184 1.70699 1.17903 1.21018 0.92294 0.95197 0.94091 1.19869 1.17840 1.16007 0.94622 0.93403 1.25962 0.98953 0.98351 0.98972 1.70708 1.44886 1.02254 1.36523 0.83516 0.76183 0.74940 0.75645 1.21732 1.21688 1.22136 1.22007 0.94226 1.00962 0.99357 1.21210 0.98675 0.90705 1.01051 0.90884 0.91548 0.90321 0.91552 0.91271 0.87479 0.87710 0.90936 0.92924 0.92028 0.92255 0.92117 0.98583 0.96265 0.91930 0.91972 0.92551 0.92021 0.90982 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.29 37.16 0.38 -1.23 16 2 C 0.06 0.78 6.19 37.16 0.23 1.01 16 3 O -0.35 -5.19 10.12 -39.24 -0.40 -5.59 16 4 C 0.50 7.57 6.06 36.01 0.22 7.79 16 5 O -0.52 -8.70 16.18 -18.76 -0.30 -9.00 16 6 C -0.17 -2.16 6.00 -91.83 -0.55 -2.71 16 7 H 0.13 1.51 8.14 -51.93 -0.42 1.09 16 8 C -0.14 -1.67 9.50 -26.82 -0.25 -1.93 16 9 C -0.08 -1.04 1.97 -154.53 -0.30 -1.35 16 10 C -0.09 -1.34 5.28 -26.56 -0.14 -1.49 16 11 C -0.13 -2.46 5.10 -26.67 -0.14 -2.60 16 12 C 0.18 3.65 2.50 -67.99 -0.17 3.48 16 13 N -0.59 -14.78 2.45 -173.55 -0.43 -15.21 16 14 C 0.12 2.85 8.94 59.85 0.53 3.39 16 15 C -0.35 -9.85 9.27 -15.06 -0.14 -9.99 16 16 H 0.05 1.36 7.96 -52.49 -0.42 0.94 16 17 C -0.02 -0.53 4.73 -17.43 -0.08 -0.61 16 18 N -0.91 -26.98 12.36 55.49 0.69 -26.29 16 19 Si 1.07 25.31 29.99 -169.99 -5.10 20.21 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 C -0.13 -2.17 5.16 -26.67 -0.14 -2.30 16 24 C -0.08 -1.05 5.67 -26.56 -0.15 -1.20 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.75 8.13 -51.93 -0.42 0.32 16 29 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 30 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.10 1.28 7.83 -51.93 -0.41 0.88 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.05 0.84 6.92 -51.93 -0.36 0.49 16 34 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.06 1.17 6.73 -51.93 -0.35 0.82 16 36 H 0.06 1.32 7.89 -51.93 -0.41 0.91 16 37 H 0.00 -0.09 8.14 -51.93 -0.42 -0.51 16 38 H 0.02 0.42 6.52 -51.93 -0.34 0.08 16 39 H 0.06 1.66 5.83 -51.93 -0.30 1.36 16 40 H 0.27 8.11 7.41 -40.82 -0.30 7.81 16 41 H 0.06 0.99 7.77 -51.93 -0.40 0.59 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 LS Contribution 349.72 15.07 5.27 5.27 Total: -1.00 -31.23 349.72 -8.55 -39.78 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -7.58 Total: 0.57 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -0.70 Total: -9.74 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.26 Total: -41.50 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.70 Total: -14.59 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -5.10 Total: 20.21 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.23 -8.55 -39.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173618957.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.248 kcal (2) G-P(sol) polarization free energy of solvation -31.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds