Wall clock time and date at job start Tue Mar 31 2020 05:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45206 * 109.47086 * 2 1 4 4 C 1.34227 * 116.99612 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00289 * 359.97438 * 4 3 2 6 6 C 1.50708 * 119.99976 * 179.97438 * 4 3 2 7 7 H 1.08998 * 115.56338 * 325.70662 * 6 4 3 8 8 C 1.53032 * 117.50138 * 111.41022 * 6 4 3 9 9 C 1.52802 * 117.50263 * 179.97438 * 6 4 3 10 10 C 1.53161 * 117.74453 * 144.89200 * 9 6 4 11 11 C 1.53187 * 108.87975 * 160.37776 * 10 9 6 12 12 C 1.52946 * 109.45186 * 56.56568 * 11 10 9 13 13 N 1.46498 * 109.40886 * 176.90839 * 12 11 10 14 14 C 1.46502 * 120.00013 * 60.35736 * 13 12 11 15 15 C 1.36932 * 119.99800 * 240.35476 * 13 12 11 16 16 H 1.08000 * 119.99773 * 22.91013 * 15 13 12 17 17 C 1.38817 * 120.00055 * 202.91171 * 15 13 12 18 18 N 1.31614 * 119.99739 * 11.59698 * 17 15 13 19 19 Si 1.86803 * 119.99807 * 191.59886 * 17 15 13 20 20 H 1.48498 * 109.47028 * 90.00024 * 19 17 15 21 21 H 1.48501 * 109.46795 * 209.99484 * 19 17 15 22 22 H 1.48498 * 109.47260 * 329.99820 * 19 17 15 23 23 C 1.52945 * 109.81942 * 297.01584 * 12 11 10 24 24 C 1.53150 * 117.75553 * 0.15525 * 9 6 4 25 25 H 1.09003 * 109.47313 * 300.00945 * 1 2 3 26 26 H 1.09011 * 109.46895 * 60.00077 * 1 2 3 27 27 H 1.08994 * 109.47237 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47552 * 239.99635 * 2 1 3 29 29 H 1.09005 * 109.47220 * 119.99676 * 2 1 3 30 30 H 1.09004 * 117.50727 * 0.02562 * 8 6 4 31 31 H 1.08998 * 117.52978 * 214.94641 * 8 6 4 32 32 H 1.08999 * 109.56896 * 280.19430 * 10 9 6 33 33 H 1.08995 * 109.57138 * 40.55979 * 10 9 6 34 34 H 1.09000 * 109.47235 * 176.55564 * 11 10 9 35 35 H 1.08992 * 109.47360 * 296.56855 * 11 10 9 36 36 H 1.08997 * 109.41097 * 57.11997 * 12 11 10 37 37 H 1.08997 * 109.46819 * 93.84025 * 14 13 12 38 38 H 1.09006 * 109.46862 * 213.83821 * 14 13 12 39 39 H 1.09001 * 109.47073 * 333.83787 * 14 13 12 40 40 H 0.97004 * 119.99661 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.47517 * 302.99485 * 23 12 11 42 42 H 1.09008 * 109.47913 * 182.98644 * 23 12 11 43 43 H 1.09000 * 109.56344 * 319.44484 * 24 9 6 44 44 H 1.08996 * 109.56944 * 79.79937 * 24 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.3502 3.6822 -0.5547 8 6 4.6482 3.4017 1.2638 9 6 5.4429 3.0713 0.0012 10 6 6.0567 4.2379 -0.7787 11 6 7.4794 4.4828 -0.2662 12 6 8.2959 3.1960 -0.3954 13 7 9.6758 3.4507 0.0257 14 6 9.9532 3.9038 1.3910 15 6 10.7062 3.2652 -0.8569 16 1 10.5190 3.2979 -1.9200 17 6 11.9913 3.0351 -0.3850 18 7 12.1865 2.7683 0.8889 19 14 13.4433 3.1042 -1.5582 20 1 13.9760 4.4896 -1.6054 21 1 14.5060 2.1811 -1.0853 22 1 13.0021 2.6970 -2.9164 23 6 7.6880 2.1052 0.4876 24 6 6.2722 1.7838 -0.0007 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 4.7104 2.6998 2.0954 31 1 4.5567 4.4520 1.5406 32 1 6.0884 3.9910 -1.8399 33 1 5.4551 5.1343 -0.6284 34 1 7.9474 5.2709 -0.8560 35 1 7.4415 4.7857 0.7801 36 1 8.2902 2.8662 -1.4343 37 1 10.1759 3.0428 2.0212 38 1 10.8088 4.5791 1.3828 39 1 9.0814 4.4265 1.7845 40 1 13.0845 2.6071 1.2185 41 1 7.6460 2.4543 1.5194 42 1 8.3040 1.2076 0.4324 43 1 5.8133 1.0531 0.6654 44 1 6.3176 1.3803 -1.0122 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173618958.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:44 Heat of formation + Delta-G solvation = -49.118786 kcal Electronic energy + Delta-G solvation = -22757.133674 eV Core-core repulsion = 19482.762425 eV Total energy + Delta-G solvation = -3274.371249 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.88630 -38.97163 -36.75105 -35.79013 -33.18684 -31.94462 -30.40735 -30.35931 -26.59901 -25.86253 -25.13359 -22.95630 -22.53233 -22.28361 -20.71535 -19.61328 -18.10149 -17.76537 -16.70589 -16.62379 -16.13711 -15.24861 -14.86887 -14.29270 -14.11955 -13.83488 -13.44892 -13.17805 -13.07728 -12.84570 -12.63462 -12.28442 -12.19166 -12.06503 -11.85291 -11.74496 -11.65302 -11.18419 -10.81680 -10.73189 -10.71938 -10.59123 -10.32863 -10.29823 -10.12583 -10.04027 -9.81025 -9.53049 -9.45710 -9.24162 -8.44445 -6.62105 -5.62253 -3.07356 2.07410 2.49701 3.43557 3.49504 3.51017 3.73160 4.52058 4.55745 4.63584 4.65579 4.72594 4.74743 4.98125 5.00214 5.21760 5.38582 5.47595 5.48084 5.53710 5.60894 5.65743 5.69219 5.78446 5.84555 5.90093 6.01506 6.08291 6.27830 6.34268 6.39175 6.44932 6.54961 6.67131 6.75311 6.90742 6.92072 7.19383 7.24444 7.51192 7.76331 7.84408 7.90386 8.51492 9.35180 9.99673 10.49348 11.42648 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.036206 B = 0.003402 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.171454 B = 8228.744369 C = 8458.937293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.360 6.360 4 C 0.491 3.509 5 O -0.496 6.496 6 C -0.175 4.175 7 H 0.131 0.869 8 C -0.140 4.140 9 C -0.068 4.068 10 C -0.079 4.079 11 C -0.126 4.126 12 C 0.178 3.822 13 N -0.599 5.599 14 C 0.165 3.835 15 C -0.249 4.249 16 H 0.067 0.933 17 C -0.001 4.001 18 N -0.910 5.910 19 Si 0.903 3.097 20 H -0.289 1.289 21 H -0.292 1.292 22 H -0.280 1.280 23 C -0.127 4.127 24 C -0.082 4.082 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.025 0.975 38 H 0.040 0.960 39 H -0.003 1.003 40 H 0.250 0.750 41 H 0.052 0.948 42 H 0.062 0.938 43 H 0.080 0.920 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.047 -0.435 -0.337 22.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.277 6.277 4 C 0.335 3.665 5 O -0.383 6.383 6 C -0.194 4.194 7 H 0.149 0.851 8 C -0.177 4.177 9 C -0.068 4.068 10 C -0.117 4.117 11 C -0.166 4.166 12 C 0.070 3.930 13 N -0.320 5.320 14 C 0.021 3.979 15 C -0.379 4.379 16 H 0.085 0.915 17 C -0.199 4.199 18 N -0.555 5.555 19 Si 0.734 3.266 20 H -0.217 1.217 21 H -0.219 1.219 22 H -0.206 1.206 23 C -0.167 4.167 24 C -0.120 4.120 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.044 0.956 38 H 0.059 0.941 39 H 0.016 0.984 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.099 0.901 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.657 -0.792 -0.246 21.672 hybrid contribution 0.735 -0.190 -0.528 0.924 sum -20.922 -0.982 -0.774 20.959 Atomic orbital electron populations 1.21801 0.92737 1.02888 1.03463 1.23004 0.95239 0.80424 1.02650 1.86495 1.24848 1.32170 1.84194 1.22774 0.80175 0.91436 0.72140 1.90669 1.59579 1.43071 1.44989 1.21928 0.97403 0.92808 1.07278 0.85142 1.23121 1.01088 1.02569 0.90952 1.21794 0.87477 0.99119 0.98419 1.21216 0.96945 0.94531 0.99044 1.22028 0.93201 1.00407 1.00943 1.20315 0.84743 0.91164 0.96769 1.43973 1.00395 1.76994 1.10669 1.20716 0.94986 0.97015 0.85231 1.19250 0.87253 1.42524 0.88873 0.91546 1.25019 0.98252 1.00450 0.96194 1.70073 1.20307 1.52182 1.12962 0.86268 0.82740 0.77326 0.80300 1.21651 1.21859 1.20582 1.22111 0.94035 1.00519 0.99995 1.21455 0.94817 0.93338 1.02399 0.91518 0.91515 0.90301 0.91229 0.91269 0.88238 0.87365 0.91403 0.92247 0.91920 0.92358 0.92320 0.95632 0.94103 0.98426 0.93926 0.92906 0.91895 0.90136 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.29 37.16 0.38 -0.58 16 2 C 0.06 0.56 6.19 37.16 0.23 0.79 16 3 O -0.36 -4.20 10.22 -39.25 -0.40 -4.60 16 4 C 0.49 6.51 7.72 36.01 0.28 6.79 16 5 O -0.50 -7.83 12.83 -18.75 -0.24 -8.07 16 6 C -0.18 -2.07 6.03 -91.85 -0.55 -2.62 16 7 H 0.13 1.27 8.14 -51.93 -0.42 0.85 16 8 C -0.14 -1.64 9.63 -26.82 -0.26 -1.89 16 9 C -0.07 -0.93 1.97 -154.55 -0.30 -1.24 16 10 C -0.08 -1.08 5.67 -26.55 -0.15 -1.23 16 11 C -0.13 -2.16 5.14 -26.66 -0.14 -2.30 16 12 C 0.18 3.70 2.50 -67.99 -0.17 3.53 16 13 N -0.60 -15.26 2.81 -173.55 -0.49 -15.74 16 14 C 0.17 4.16 8.06 59.85 0.48 4.64 16 15 C -0.25 -6.99 9.59 -15.06 -0.14 -7.14 16 16 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 17 C 0.00 -0.04 5.12 -17.43 -0.09 -0.13 16 18 N -0.91 -27.15 10.63 55.49 0.59 -26.56 16 19 Si 0.90 22.35 29.57 -169.99 -5.03 17.32 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 23 C -0.13 -2.46 5.16 -26.67 -0.14 -2.60 16 24 C -0.08 -1.35 4.24 -26.56 -0.11 -1.47 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 27 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 29 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 30 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 1.01 6.79 -51.93 -0.35 0.66 16 36 H 0.06 1.26 7.86 -51.93 -0.41 0.85 16 37 H 0.03 0.70 7.42 -51.93 -0.39 0.31 16 38 H 0.04 1.11 7.21 -51.93 -0.37 0.73 16 39 H 0.00 -0.06 6.50 -51.93 -0.34 -0.40 16 40 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.05 1.03 7.77 -51.93 -0.40 0.63 16 42 H 0.06 1.37 8.14 -51.92 -0.42 0.95 16 43 H 0.08 1.37 5.81 -51.93 -0.30 1.07 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 345.96 15.07 5.21 5.21 Total: -1.00 -31.37 345.96 -8.64 -40.01 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -7.60 Total: -2.14 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -0.69 Total: -5.44 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.10 Total: -42.30 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.64 Total: -12.67 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.03 Total: 17.32 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.37 -8.64 -40.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173618958.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.107 kcal (2) G-P(sol) polarization free energy of solvation -31.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds