Wall clock time and date at job start Tue Mar 31 2020 05:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45208 * 109.46819 * 2 1 4 4 C 1.34227 * 116.99628 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00041 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99959 * 179.97438 * 4 3 2 7 7 C 1.53000 * 109.47248 * 179.97438 * 6 4 3 8 8 H 1.08996 * 110.81652 * 51.66549 * 7 6 4 9 9 C 1.55238 * 110.89664 * 288.21602 * 7 6 4 10 10 C 1.54270 * 104.23023 * 203.79275 * 9 7 6 11 11 C 1.53872 * 106.59712 * 23.61181 * 10 9 7 12 12 H 1.09003 * 110.07418 * 240.69520 * 11 10 9 13 13 N 1.46897 * 110.03379 * 119.28794 * 11 10 9 14 14 C 1.47477 * 111.00129 * 78.91875 * 13 11 10 15 15 C 1.53517 * 87.93061 * 138.70699 * 14 13 11 16 16 C 1.50695 * 114.17186 * 220.33052 * 15 14 13 17 17 H 1.08005 * 120.00344 * 93.84002 * 16 15 14 18 18 C 1.37882 * 120.00251 * 273.84128 * 16 15 14 19 19 N 1.31516 * 119.99474 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00117 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47120 * 60.00422 * 20 18 16 22 22 H 1.48509 * 109.46995 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47365 * 299.99968 * 20 18 16 24 24 C 1.47478 * 111.00155 * 174.89414 * 13 11 10 25 25 C 1.54265 * 106.59942 * 0.02562 * 11 10 9 26 26 H 1.09005 * 109.47064 * 300.00343 * 1 2 3 27 27 H 1.09004 * 109.47305 * 59.99778 * 1 2 3 28 28 H 1.08997 * 109.47156 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46771 * 240.00305 * 2 1 3 30 30 H 1.08994 * 109.47093 * 119.99723 * 2 1 3 31 31 H 1.09004 * 109.46964 * 59.99723 * 6 4 3 32 32 H 1.08999 * 109.46970 * 300.00063 * 6 4 3 33 33 H 1.08996 * 110.46931 * 85.10326 * 9 7 6 34 34 H 1.09001 * 110.47434 * 322.48144 * 9 7 6 35 35 H 1.09005 * 110.03142 * 264.32753 * 10 9 7 36 36 H 1.08996 * 110.07279 * 142.91874 * 10 9 7 37 37 H 1.09001 * 113.47739 * 253.47108 * 14 13 11 38 38 H 1.08999 * 113.47558 * 23.94326 * 14 13 11 39 39 H 1.08997 * 114.16868 * 87.62256 * 15 14 13 40 40 H 0.97001 * 119.99588 * 180.02562 * 19 18 16 41 41 H 1.08998 * 113.47478 * 336.06325 * 24 13 11 42 42 H 1.09004 * 113.47304 * 106.52743 * 24 13 11 43 43 H 1.08999 * 110.48811 * 95.07367 * 25 11 10 44 44 H 1.09008 * 110.48362 * 217.58085 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 -0.0012 7 6 5.4486 2.8575 -0.0010 8 1 5.8024 2.2058 -0.7999 9 6 5.9777 2.3764 1.3768 10 6 7.4215 2.9165 1.4382 11 6 7.4815 4.1202 0.4815 12 1 8.2114 3.9356 -0.3068 13 7 7.8402 5.3358 1.2241 14 6 9.2904 5.3861 1.4869 15 6 9.2435 6.8828 1.1489 16 6 10.4162 7.3691 0.3370 17 1 10.3479 7.4091 -0.7402 18 6 11.5765 7.7630 0.9692 19 7 11.6599 7.7138 2.2808 20 14 13.0304 8.3652 -0.0373 21 1 12.6276 9.5586 -0.8239 22 1 14.1472 8.7254 0.8728 23 1 13.4725 7.2897 -0.9609 24 6 8.0227 6.4789 0.3103 25 6 6.0720 4.2699 -0.1273 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.5850 3.4699 0.8888 32 1 3.5844 3.4694 -0.8912 33 1 5.9753 1.2876 1.4270 34 1 5.3782 2.7978 2.1837 35 1 8.1222 2.1468 1.1143 36 1 7.6593 3.2342 2.4533 37 1 9.5507 5.1836 2.5259 38 1 9.8800 4.8000 0.7820 39 1 9.0090 7.5249 1.9978 40 1 12.4760 7.9913 2.7255 41 1 8.2740 6.1844 -0.7086 42 1 7.2086 7.2025 0.3520 43 1 5.4881 4.9973 0.4367 44 1 6.1382 4.5650 -1.1746 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173640807.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:52 Heat of formation + Delta-G solvation = -73.599808 kcal Electronic energy + Delta-G solvation = -21982.561563 eV Core-core repulsion = 18707.128737 eV Total energy + Delta-G solvation = -3275.432826 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.72672 -39.43626 -37.43012 -36.39337 -32.75123 -32.23595 -31.30359 -28.93547 -27.52477 -25.70784 -24.58671 -23.56482 -22.98759 -21.36436 -19.82259 -19.48117 -18.59193 -17.78410 -16.94054 -16.67661 -16.35668 -15.61780 -14.99478 -14.67983 -14.37970 -14.18889 -13.62552 -13.38773 -13.34618 -13.16582 -12.82294 -12.52078 -12.19739 -12.01386 -11.88360 -11.53093 -11.38529 -11.06384 -11.01889 -10.96148 -10.82456 -10.76546 -10.63115 -10.55103 -10.42186 -10.37679 -10.03775 -9.61696 -9.11221 -8.88331 -8.41268 -7.92535 -6.03671 -4.07947 2.06820 2.45787 3.30939 3.36021 3.38152 4.40978 4.42153 4.57108 4.58569 4.63503 4.69317 4.89729 4.91594 5.07440 5.21789 5.27415 5.32996 5.40251 5.42563 5.44738 5.60395 5.69618 5.75532 5.83788 5.88234 6.03668 6.07343 6.13795 6.22823 6.30940 6.34115 6.42120 6.52478 6.57905 6.64267 6.72208 6.86774 7.18306 7.25697 7.60315 7.74578 7.94449 8.16828 8.40200 8.94902 9.56698 11.05889 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.056701 B = 0.002642 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.696100 B =10595.860801 C =10705.772753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.363 6.363 4 C 0.461 3.539 5 O -0.505 6.505 6 C -0.105 4.105 7 C -0.082 4.082 8 H 0.083 0.917 9 C -0.113 4.113 10 C -0.113 4.113 11 C 0.047 3.953 12 H 0.044 0.956 13 N -0.478 5.478 14 C 0.006 3.994 15 C 0.041 3.959 16 C -0.516 4.516 17 H 0.056 0.944 18 C 0.066 3.934 19 N -0.886 5.886 20 Si 0.891 3.109 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.004 4.004 25 C -0.108 4.108 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.262 0.738 41 H 0.052 0.948 42 H 0.059 0.941 43 H 0.078 0.922 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.284 -12.887 -4.157 23.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.280 6.280 4 C 0.304 3.696 5 O -0.392 6.392 6 C -0.142 4.142 7 C -0.101 4.101 8 H 0.102 0.898 9 C -0.151 4.151 10 C -0.151 4.151 11 C -0.062 4.062 12 H 0.062 0.938 13 N -0.200 5.200 14 C -0.123 4.123 15 C 0.022 3.978 16 C -0.554 4.554 17 H 0.074 0.926 18 C -0.137 4.137 19 N -0.524 5.524 20 Si 0.719 3.281 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.133 4.133 25 C -0.146 4.146 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.097 0.903 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.456 -13.177 -3.450 23.750 hybrid contribution 1.440 -0.123 -1.234 1.900 sum -18.016 -13.301 -4.684 22.878 Atomic orbital electron populations 1.21808 0.92687 1.02924 1.03550 1.23000 0.95323 0.80433 1.02554 1.86523 1.25027 1.32247 1.84223 1.23954 0.80251 0.93231 0.72133 1.90662 1.60273 1.43277 1.44966 1.21495 0.96509 0.90345 1.05881 1.22038 0.90788 0.97838 0.99409 0.89845 1.22444 0.96369 1.00469 0.95780 1.22079 0.96071 0.96192 1.00734 1.22771 0.95765 0.92818 0.94891 0.93795 1.69017 1.19264 1.02025 1.29728 1.23996 0.86229 1.01981 1.00064 1.20092 0.91178 0.91572 0.94971 1.21004 0.97746 1.43857 0.92823 0.92567 1.25023 0.98685 0.95097 0.94858 1.69961 1.27555 1.47222 1.07639 0.86681 0.82102 0.79323 0.80021 1.20164 1.21259 1.20282 1.23937 0.99968 0.93583 0.95782 1.22407 0.96133 0.95590 1.00422 0.91434 0.91489 0.90304 0.91333 0.91272 0.87419 0.87681 0.91421 0.91865 0.92449 0.90790 0.91966 0.93075 0.91904 0.92841 0.93012 0.92237 0.90343 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.29 37.16 0.38 -0.46 16 2 C 0.06 0.49 6.19 37.16 0.23 0.72 16 3 O -0.36 -3.72 10.22 -39.25 -0.40 -4.12 16 4 C 0.46 5.23 7.80 36.01 0.28 5.51 16 5 O -0.50 -7.05 14.62 -18.75 -0.27 -7.32 16 6 C -0.10 -1.02 5.32 -27.88 -0.15 -1.17 16 7 C -0.08 -0.98 2.46 -88.43 -0.22 -1.20 16 8 H 0.08 1.06 7.88 -51.93 -0.41 0.65 16 9 C -0.11 -1.49 5.78 -24.88 -0.14 -1.63 16 10 C -0.11 -1.73 6.36 -25.61 -0.16 -1.89 16 11 C 0.05 0.79 2.25 -66.60 -0.15 0.64 16 12 H 0.04 0.79 7.61 -51.93 -0.40 0.39 16 13 N -0.48 -9.52 5.97 -235.25 -1.40 -10.93 16 14 C 0.01 0.14 7.03 -7.54 -0.05 0.09 16 15 C 0.04 1.03 3.77 -91.24 -0.34 0.68 16 16 C -0.52 -14.09 8.82 -34.44 -0.30 -14.39 16 17 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 18 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 19 N -0.89 -25.68 13.26 55.43 0.74 -24.94 16 20 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 24 C 0.00 -0.08 6.73 -7.55 -0.05 -0.13 16 25 C -0.11 -1.46 5.37 -25.06 -0.13 -1.60 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 30 H 0.07 0.57 8.13 -51.93 -0.42 0.14 16 31 H 0.11 0.94 8.00 -51.93 -0.42 0.52 16 32 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.92 7.41 -51.93 -0.38 0.53 16 34 H 0.06 0.81 7.95 -51.93 -0.41 0.39 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 1.23 7.89 -51.93 -0.41 0.82 16 37 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.05 1.20 7.61 -51.93 -0.40 0.80 16 39 H 0.06 1.73 8.11 -51.93 -0.42 1.31 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.05 1.07 7.79 -51.93 -0.40 0.67 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.08 1.08 7.96 -51.93 -0.41 0.67 16 44 H 0.06 0.80 8.14 -51.92 -0.42 0.37 16 LS Contribution 354.27 15.07 5.34 5.34 Total: -1.00 -29.90 354.27 -9.77 -39.67 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -7.83 Total: -0.73 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -0.91 Total: -13.09 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: -0.67 Total: -35.87 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: -0.68 Total: -11.44 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.90 -9.77 -39.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173640807.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.929 kcal (2) G-P(sol) polarization free energy of solvation -29.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds