Wall clock time and date at job start Tue Mar 31 2020 06:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 113.99888 * 2 1 4 4 C 1.53006 * 109.47192 * 179.97438 * 3 2 1 5 5 C 1.50705 * 112.84492 * 309.66960 * 4 3 2 6 6 O 1.21288 * 119.99527 * 228.80111 * 5 4 3 7 7 N 1.34771 * 120.00226 * 48.80051 * 5 4 3 8 8 C 1.46503 * 119.99702 * 180.02562 * 7 5 4 9 9 H 1.09001 * 109.41459 * 35.14040 * 8 7 5 10 10 C 1.52963 * 109.41306 * 154.99942 * 8 7 5 11 11 C 1.53222 * 109.40418 * 183.70397 * 10 8 7 12 12 C 1.51270 * 108.53730 * 305.37144 * 11 10 8 13 13 C 1.37883 * 120.85413 * 231.32422 * 12 11 10 14 14 N 1.31516 * 119.99615 * 349.15638 * 13 12 11 15 15 Si 1.86801 * 120.00286 * 169.14885 * 13 12 11 16 16 H 1.48499 * 109.46807 * 354.66285 * 15 13 12 17 17 H 1.48498 * 109.46719 * 114.66214 * 15 13 12 18 18 H 1.48495 * 109.47315 * 234.66518 * 15 13 12 19 19 C 1.51271 * 118.30082 * 51.35022 * 12 11 10 20 20 C 1.53231 * 108.69444 * 308.55759 * 19 12 11 21 21 C 1.53777 * 113.69300 * 80.93042 * 4 3 2 22 22 C 1.53779 * 87.07868 * 89.12863 * 21 4 3 23 23 C 1.53774 * 113.61484 * 178.46899 * 4 3 2 24 24 H 1.09006 * 109.46839 * 60.00361 * 1 2 3 25 25 H 1.08999 * 109.47366 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47178 * 300.00336 * 1 2 3 27 27 H 1.08997 * 109.47331 * 59.99653 * 3 2 1 28 28 H 1.09002 * 109.47535 * 299.99268 * 3 2 1 29 29 H 0.96993 * 120.00027 * 0.02562 * 7 5 4 30 30 H 1.09002 * 109.47752 * 63.72291 * 10 8 7 31 31 H 1.09000 * 109.49712 * 303.69362 * 10 8 7 32 32 H 1.09001 * 109.62972 * 185.66324 * 11 10 8 33 33 H 1.09000 * 109.78786 * 65.18146 * 11 10 8 34 34 H 0.97004 * 119.99729 * 179.97438 * 14 13 12 35 35 H 1.09006 * 109.62388 * 68.36542 * 19 12 11 36 36 H 1.08996 * 109.62970 * 188.74558 * 19 12 11 37 37 H 1.08996 * 109.48103 * 174.70320 * 20 19 12 38 38 H 1.09001 * 109.47662 * 294.74287 * 20 19 12 39 39 H 1.08993 * 113.61949 * 203.67754 * 21 4 3 40 40 H 1.09010 * 113.61355 * 334.58679 * 21 4 3 41 41 H 1.09005 * 113.61858 * 270.88425 * 22 21 4 42 42 H 1.09004 * 113.61353 * 139.97950 * 22 21 4 43 43 H 1.09000 * 113.61587 * 25.34862 * 23 4 3 44 44 H 1.09003 * 113.60956 * 156.16326 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.0483 0.2549 1.0701 6 8 4.9517 0.6079 1.7983 7 7 3.5031 -0.9688 1.2173 8 6 4.0014 -1.8724 2.2573 9 1 4.2880 -1.2922 3.1344 10 6 2.9005 -2.8629 2.6403 11 6 3.3898 -3.7475 3.7917 12 6 4.6944 -4.3938 3.3809 13 6 4.8737 -5.7565 3.4902 14 7 3.9978 -6.4843 4.1480 15 14 6.3606 -6.5690 2.7037 16 1 7.1181 -5.5612 1.9191 17 1 7.2357 -7.1311 3.7635 18 1 5.9098 -7.6605 1.8033 19 6 5.7975 -3.5066 2.8476 20 6 5.2253 -2.6305 1.7282 21 6 4.1345 0.9144 -1.3896 22 6 4.2023 2.4400 -1.5703 23 6 4.2607 2.5401 -0.0369 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.6885 1.8464 0.8899 28 1 1.6887 1.8464 -0.8900 29 1 2.7809 -1.2513 0.6347 30 1 2.6578 -3.4870 1.7802 31 1 2.0119 -2.3156 2.9546 32 1 2.6490 -4.5193 4.0009 33 1 3.5469 -3.1398 4.6829 34 1 4.1237 -7.4430 4.2246 35 1 6.1782 -2.8738 3.6494 36 1 6.6050 -4.1234 2.4533 37 1 5.9838 -1.9206 1.3985 38 1 4.9276 -3.2604 0.8899 39 1 5.1126 0.4345 -1.3579 40 1 3.4433 0.4238 -2.0751 41 1 3.2981 2.8693 -2.0018 42 1 5.1118 2.7811 -2.0651 43 1 3.6715 3.3620 0.3697 44 1 5.2729 2.5050 0.3661 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181952301.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:39 Heat of formation + Delta-G solvation = -77.451774 kcal Electronic energy + Delta-G solvation = -23418.767685 eV Core-core repulsion = 20143.167825 eV Total energy + Delta-G solvation = -3275.599860 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.61336 -38.14139 -37.39074 -36.25990 -33.49046 -31.48785 -29.61217 -29.22977 -27.16967 -26.34370 -25.68073 -24.35455 -22.20819 -21.40902 -20.36441 -19.47309 -18.63387 -17.33738 -16.43730 -16.07114 -15.95692 -15.48233 -15.20388 -14.50111 -14.41194 -14.14180 -14.06400 -13.14117 -12.90695 -12.63822 -12.48261 -12.39887 -12.17196 -12.06920 -11.94753 -11.63832 -11.44786 -11.14320 -10.90380 -10.76900 -10.67230 -10.61765 -10.46136 -10.04978 -9.91369 -9.91074 -9.36435 -9.27380 -8.87245 -8.71372 -8.36263 -8.09493 -6.06834 -3.94602 3.00227 3.30001 3.39903 3.41582 3.43146 3.77462 4.42400 4.43622 4.45759 4.62413 4.76065 4.96556 5.04784 5.17676 5.20249 5.21777 5.32460 5.46122 5.55012 5.64200 5.70885 5.77972 5.84862 5.87457 5.98914 6.03756 6.26402 6.32846 6.57730 6.66460 6.83744 6.89269 6.93852 6.99485 7.06956 7.23681 7.40964 7.53264 7.69504 7.80732 7.85026 8.24183 8.44612 8.84337 9.01325 9.60081 11.02819 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023751 B = 0.004701 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.604090 B = 5955.034084 C = 6550.931380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.389 6.389 3 C 0.090 3.910 4 C -0.111 4.111 5 C 0.525 3.475 6 O -0.553 6.553 7 N -0.708 5.708 8 C 0.152 3.848 9 H 0.074 0.926 10 C -0.111 4.111 11 C 0.014 3.986 12 C -0.485 4.485 13 C 0.076 3.924 14 N -0.888 5.888 15 Si 0.877 3.123 16 H -0.255 1.255 17 H -0.283 1.283 18 H -0.286 1.286 19 C -0.023 4.023 20 C -0.112 4.112 21 C -0.116 4.116 22 C -0.143 4.143 23 C -0.107 4.107 24 H 0.041 0.959 25 H 0.090 0.910 26 H 0.042 0.958 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.404 0.596 30 H 0.052 0.948 31 H 0.034 0.966 32 H 0.056 0.944 33 H 0.006 0.994 34 H 0.263 0.737 35 H 0.018 0.982 36 H 0.040 0.960 37 H 0.035 0.965 38 H 0.048 0.952 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.118 15.548 -12.156 20.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.308 6.308 3 C 0.013 3.987 4 C -0.115 4.115 5 C 0.310 3.690 6 O -0.432 6.432 7 N -0.360 5.360 8 C 0.049 3.951 9 H 0.092 0.908 10 C -0.150 4.150 11 C -0.024 4.024 12 C -0.504 4.504 13 C -0.126 4.126 14 N -0.526 5.526 15 Si 0.706 3.294 16 H -0.181 1.181 17 H -0.210 1.210 18 H -0.213 1.213 19 C -0.061 4.061 20 C -0.151 4.151 21 C -0.154 4.154 22 C -0.180 4.180 23 C -0.145 4.145 24 H 0.059 0.941 25 H 0.109 0.891 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.243 0.757 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.024 0.976 34 H 0.072 0.928 35 H 0.036 0.964 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.067 0.933 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.445 15.410 -11.570 20.025 hybrid contribution 0.081 -0.515 -0.674 0.852 sum -5.364 14.895 -12.244 20.014 Atomic orbital electron populations 1.22763 0.80299 1.03283 0.99882 1.87656 1.20226 1.27551 1.95356 1.22215 0.90589 0.85067 1.00820 1.22203 0.94429 0.98087 0.96754 1.20018 0.82543 0.82466 0.84023 1.90659 1.30470 1.76167 1.45902 1.46613 1.38084 1.14803 1.36539 1.21095 0.94973 0.89604 0.89440 0.90831 1.21889 0.95071 0.96690 1.01321 1.19317 0.96830 0.94594 0.91624 1.20052 0.98311 0.91087 1.40996 1.24834 0.96279 0.96768 0.94751 1.69905 1.36422 1.06365 1.39923 0.86762 0.83543 0.79057 0.80069 1.18052 1.20963 1.21287 1.19931 0.96651 0.95673 0.93889 1.21963 0.95878 0.97523 0.99723 1.22855 1.01673 0.96888 0.94001 1.22889 1.02266 0.96301 0.96582 1.22811 1.01895 0.93900 0.95887 0.94081 0.89145 0.93903 0.92552 0.92163 0.75743 0.92922 0.94706 0.92571 0.97574 0.92758 0.96358 0.94168 0.94670 0.93294 0.89394 0.90476 0.90124 0.90896 0.91110 0.88042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -4.48 7.59 -35.23 -0.27 -4.75 16 3 C 0.09 0.94 5.26 37.16 0.20 1.13 16 4 C -0.11 -1.39 1.12 -154.85 -0.17 -1.57 16 5 C 0.52 9.16 6.88 -10.99 -0.08 9.08 16 6 O -0.55 -11.69 15.56 5.55 0.09 -11.61 16 7 N -0.71 -12.62 4.76 -53.63 -0.26 -12.88 16 8 C 0.15 3.20 2.35 -67.75 -0.16 3.04 16 9 H 0.07 1.71 7.58 -51.93 -0.39 1.32 16 10 C -0.11 -2.39 5.41 -26.64 -0.14 -2.54 16 11 C 0.01 0.36 5.93 -27.49 -0.16 0.20 16 12 C -0.49 -13.09 5.48 -98.92 -0.54 -13.63 16 13 C 0.08 2.11 5.44 -17.82 -0.10 2.01 16 14 N -0.89 -25.82 12.82 55.43 0.71 -25.11 16 15 Si 0.88 21.21 27.95 -169.99 -4.75 16.46 16 16 H -0.26 -5.97 5.57 56.52 0.32 -5.66 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 C -0.02 -0.58 5.64 -27.48 -0.15 -0.74 16 20 C -0.11 -2.50 5.54 -26.42 -0.15 -2.64 16 21 C -0.12 -1.26 7.20 -25.92 -0.19 -1.45 16 22 C -0.14 -1.24 7.73 -25.92 -0.20 -1.44 16 23 C -0.11 -1.17 7.00 -25.93 -0.18 -1.35 16 24 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.49 7.34 -51.93 -0.38 0.10 16 29 H 0.40 6.55 5.84 -40.82 -0.24 6.32 16 30 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 1.53 7.19 -51.93 -0.37 1.16 16 33 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.04 0.98 4.35 -51.93 -0.23 0.76 16 37 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.09 1.06 8.09 -51.93 -0.42 0.64 16 40 H 0.08 0.76 8.10 -51.92 -0.42 0.34 16 41 H 0.08 0.57 7.64 -51.93 -0.40 0.17 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 44 H 0.10 1.30 7.43 -51.93 -0.39 0.92 16 LS Contribution 340.01 15.07 5.12 5.12 Total: -1.00 -31.08 340.01 -7.80 -38.88 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -7.53 Total: 2.36 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -0.92 Total: -8.49 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.46 Total: -37.99 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.18 Total: -16.35 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.75 Total: 16.46 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.08 -7.80 -38.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181952301.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.570 kcal (2) G-P(sol) polarization free energy of solvation -31.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds