Wall clock time and date at job start Tue Mar 31 2020 06:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45199 * 109.47200 * 2 1 4 4 C 1.34225 * 117.00035 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99842 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00049 * 180.02562 * 4 3 2 7 7 N 1.46910 * 109.46955 * 179.97438 * 6 4 3 8 8 C 1.46900 * 110.99929 * 293.94886 * 7 6 4 9 9 C 1.50697 * 109.46916 * 163.91088 * 8 7 6 10 10 H 1.08004 * 119.99851 * 357.09857 * 9 8 7 11 11 C 1.37876 * 119.99841 * 177.10126 * 9 8 7 12 12 N 1.31513 * 120.00306 * 5.36393 * 11 9 8 13 13 Si 1.86804 * 120.00036 * 185.36425 * 11 9 8 14 14 H 1.48497 * 109.46908 * 64.99620 * 13 11 9 15 15 H 1.48496 * 109.47218 * 185.00099 * 13 11 9 16 16 H 1.48511 * 109.46705 * 304.99847 * 13 11 9 17 17 C 1.46895 * 110.99652 * 169.99904 * 7 6 4 18 18 C 1.53007 * 109.47098 * 286.25264 * 17 7 6 19 19 H 1.09005 * 109.63694 * 54.12130 * 18 17 7 20 20 C 1.53019 * 109.64559 * 293.69588 * 18 17 7 21 21 C 1.50069 * 110.14642 * 190.87728 * 20 18 17 22 22 C 1.29435 * 124.07819 * 17.13562 * 21 20 18 23 23 C 1.50073 * 124.07225 * 359.50023 * 22 21 20 24 24 C 1.53038 * 110.13960 * 17.17801 * 23 22 21 25 25 H 1.09001 * 109.46488 * 300.00460 * 1 2 3 26 26 H 1.08994 * 109.46998 * 59.99835 * 1 2 3 27 27 H 1.08996 * 109.46943 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46985 * 239.99586 * 2 1 3 29 29 H 1.09002 * 109.46857 * 119.99890 * 2 1 3 30 30 H 1.08998 * 109.47048 * 299.99215 * 6 4 3 31 31 H 1.08998 * 109.47018 * 59.99908 * 6 4 3 32 32 H 1.08994 * 109.47153 * 283.91268 * 8 7 6 33 33 H 1.09002 * 109.46870 * 43.91634 * 8 7 6 34 34 H 0.96994 * 120.00054 * 179.97438 * 12 11 9 35 35 H 1.08995 * 109.47572 * 46.25651 * 17 7 6 36 36 H 1.09003 * 109.47425 * 166.25950 * 17 7 6 37 37 H 1.08999 * 109.35593 * 311.08537 * 20 18 17 38 38 H 1.08998 * 109.35262 * 70.80704 * 20 18 17 39 39 H 1.08001 * 117.95859 * 197.15258 * 21 20 18 40 40 H 1.07994 * 117.96725 * 179.52812 * 22 21 20 41 41 H 1.09009 * 109.35227 * 137.36517 * 23 22 21 42 42 H 1.08997 * 109.36382 * 257.08596 * 23 22 21 43 43 H 1.09004 * 109.63261 * 190.85995 * 24 23 22 44 44 H 1.08994 * 109.66127 * 70.21871 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9208 2.9374 0.0000 7 7 5.3879 2.8604 -0.0001 8 6 5.8845 2.2764 1.2530 9 6 7.3185 1.8491 1.0743 10 1 7.7972 1.9536 0.1118 11 6 8.0195 1.3249 2.1396 12 7 7.4082 1.0994 3.2820 13 14 9.8376 0.9350 1.9604 14 1 10.5942 2.1934 1.7388 15 1 10.3265 0.2746 3.1972 16 1 10.0371 0.0269 0.8023 17 6 5.9842 4.1817 -0.2378 18 6 5.8096 4.5628 -1.7093 19 1 4.7568 4.4938 -1.9831 20 6 6.6325 3.6172 -2.5868 21 6 6.6854 4.1334 -3.9949 22 6 6.3988 5.3496 -4.3327 23 6 5.9632 6.4106 -3.3649 24 6 6.3127 5.9943 -1.9342 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.5845 3.4700 -0.8896 31 1 3.5853 3.4690 0.8905 32 1 5.8229 3.0183 2.0491 33 1 5.2774 1.4101 1.5157 34 1 7.9012 0.7302 4.0313 35 1 5.4893 4.9221 0.3905 36 1 7.0462 4.1501 0.0057 37 1 7.6452 3.5455 -2.1899 38 1 6.1724 2.6291 -2.5833 39 1 6.9807 3.4473 -4.7750 40 1 6.4775 5.6174 -5.3759 41 1 6.4694 7.3462 -3.6027 42 1 4.8855 6.5524 -3.4450 43 1 5.8279 6.6683 -1.2279 44 1 7.3932 6.0290 -1.7959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201426391.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:17 Heat of formation + Delta-G solvation = -79.080717 kcal Electronic energy + Delta-G solvation = -22841.133014 eV Core-core repulsion = 19565.462518 eV Total energy + Delta-G solvation = -3275.670496 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.98468 -38.63401 -36.69241 -35.46222 -32.59065 -31.69353 -31.23269 -30.43659 -28.31316 -26.45473 -24.27086 -22.98742 -22.82583 -21.33645 -20.74918 -19.51629 -17.70020 -17.14464 -16.56561 -16.05190 -15.79670 -15.76953 -14.69562 -14.28299 -14.17451 -13.97246 -13.73986 -13.26155 -13.02437 -12.82924 -12.71312 -12.25516 -12.19402 -12.01481 -11.96290 -11.85766 -11.49949 -11.39988 -11.14114 -10.97994 -10.69065 -10.61945 -10.24770 -10.19367 -9.97323 -9.92959 -9.84262 -9.44058 -9.17175 -8.73644 -8.29682 -7.32529 -5.94183 -3.92635 2.51524 2.84846 3.00935 3.38390 3.42340 3.45702 4.47871 4.77578 4.96601 5.01257 5.03005 5.05696 5.21607 5.23804 5.40521 5.41504 5.51221 5.55793 5.62519 5.63471 5.74561 5.78347 5.83210 5.85221 5.91689 5.99505 6.03953 6.11889 6.20738 6.30087 6.44925 6.48097 6.67965 6.85107 6.86961 6.89976 7.22164 7.26233 7.32128 7.86112 8.14492 8.18405 8.39380 8.59714 9.12658 9.69150 11.17307 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.007959 B = 0.007740 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3517.388116 B = 3616.917226 C = 6480.115460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.372 6.372 4 C 0.452 3.548 5 O -0.465 6.465 6 C 0.064 3.936 7 N -0.520 5.520 8 C 0.188 3.812 9 C -0.494 4.494 10 H 0.063 0.937 11 C 0.054 3.946 12 N -0.900 5.900 13 Si 0.895 3.105 14 H -0.278 1.278 15 H -0.289 1.289 16 H -0.276 1.276 17 C 0.069 3.931 18 C -0.081 4.081 19 H 0.064 0.936 20 C -0.079 4.079 21 C -0.141 4.141 22 C -0.176 4.176 23 C -0.085 4.085 24 C -0.116 4.116 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.062 0.938 32 H -0.012 1.012 33 H 0.044 0.956 34 H 0.260 0.740 35 H 0.024 0.976 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.759 6.825 -10.393 15.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.290 6.290 4 C 0.293 3.707 5 O -0.348 6.348 6 C -0.065 4.065 7 N -0.246 5.246 8 C 0.063 3.937 9 C -0.533 4.533 10 H 0.081 0.919 11 C -0.147 4.147 12 N -0.540 5.540 13 Si 0.723 3.277 14 H -0.204 1.204 15 H -0.215 1.215 16 H -0.202 1.202 17 C -0.059 4.059 18 C -0.100 4.100 19 H 0.082 0.918 20 C -0.116 4.116 21 C -0.159 4.159 22 C -0.194 4.194 23 C -0.122 4.122 24 C -0.154 4.154 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.119 0.881 31 H 0.080 0.920 32 H 0.006 0.994 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.042 0.958 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.364 6.091 -10.582 15.387 hybrid contribution 0.768 -0.007 0.590 0.968 sum -8.596 6.084 -9.992 14.517 Atomic orbital electron populations 1.21780 0.93169 1.02540 1.03179 1.22894 0.94764 0.81037 1.02536 1.86462 1.25627 1.31747 1.85206 1.23768 0.79911 0.93397 0.73665 1.90746 1.59569 1.42529 1.41974 1.21541 0.92428 0.89766 1.02787 1.61880 1.00312 1.21670 1.40720 1.19909 0.96736 0.94211 0.82817 1.21018 0.95730 1.40439 0.96130 0.91878 1.24955 0.98390 0.95894 0.95412 1.69960 1.36036 1.45185 1.02856 0.86605 0.85345 0.78468 0.77264 1.20425 1.21497 1.20158 1.22096 1.01577 0.88593 0.93590 1.21235 0.99306 0.93799 0.95666 0.91772 1.20410 1.00961 0.99623 0.90618 1.22300 0.99005 0.96193 0.98390 1.21935 1.03283 0.95336 0.98876 1.20387 1.00579 0.97032 0.94206 1.21646 1.01510 0.96573 0.95670 0.91661 0.91755 0.90624 0.91556 0.91375 0.88141 0.92000 0.99386 0.93791 0.93060 0.95769 0.89052 0.90537 0.89874 0.88610 0.88842 0.91746 0.91504 0.91989 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.29 37.16 0.38 -1.09 16 2 C 0.06 0.86 6.19 37.16 0.23 1.09 16 3 O -0.37 -6.11 10.22 -39.24 -0.40 -6.51 16 4 C 0.45 8.77 7.52 36.01 0.27 9.04 16 5 O -0.47 -10.96 14.23 -18.75 -0.27 -11.23 16 6 C 0.06 1.14 5.40 -4.97 -0.03 1.11 16 7 N -0.52 -10.91 3.85 -237.51 -0.91 -11.82 16 8 C 0.19 4.93 4.29 -4.98 -0.02 4.91 16 9 C -0.49 -14.05 8.33 -34.44 -0.29 -14.34 16 10 H 0.06 1.77 7.76 -52.48 -0.41 1.36 16 11 C 0.05 1.57 5.45 -17.82 -0.10 1.47 16 12 N -0.90 -27.41 13.30 55.43 0.74 -26.67 16 13 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 C 0.07 1.25 4.21 -3.82 -0.02 1.23 16 18 C -0.08 -1.20 2.28 -90.40 -0.21 -1.41 16 19 H 0.06 0.92 6.52 -51.93 -0.34 0.58 16 20 C -0.08 -1.25 5.23 -28.18 -0.15 -1.39 16 21 C -0.14 -1.90 9.80 -35.90 -0.35 -2.26 16 22 C -0.18 -2.14 9.80 -35.90 -0.35 -2.49 16 23 C -0.09 -0.95 6.12 -28.17 -0.17 -1.13 16 24 C -0.12 -1.46 5.31 -26.51 -0.14 -1.60 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 29 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 30 H 0.10 1.48 6.44 -51.93 -0.33 1.15 16 31 H 0.06 1.04 8.12 -51.93 -0.42 0.62 16 32 H -0.01 -0.32 8.05 -51.93 -0.42 -0.74 16 33 H 0.04 1.29 5.81 -51.93 -0.30 0.98 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.02 0.41 8.03 -51.93 -0.42 -0.01 16 36 H 0.09 1.85 7.06 -51.93 -0.37 1.48 16 37 H 0.08 1.30 8.06 -51.93 -0.42 0.88 16 38 H 0.08 1.47 8.09 -51.93 -0.42 1.05 16 39 H 0.10 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.09 1.00 8.06 -52.49 -0.42 0.57 16 41 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16 LS Contribution 354.27 15.07 5.34 5.34 Total: -1.00 -32.22 354.27 -9.09 -41.31 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -7.63 Total: -0.67 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -0.94 Total: -6.86 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: -0.18 Total: -38.49 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.67 Total: -17.74 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.22 -9.09 -41.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201426391.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.774 kcal (2) G-P(sol) polarization free energy of solvation -32.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds