Wall clock time and date at job start Tue Mar 31 2020 06:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45202 * 109.46798 * 2 1 4 4 C 1.34238 * 116.99530 * 180.02562 * 3 2 1 5 5 O 1.20817 * 120.00046 * 359.97438 * 4 3 2 6 6 C 1.50707 * 119.99370 * 180.02562 * 4 3 2 7 7 N 1.46901 * 109.46557 * 179.97438 * 6 4 3 8 8 C 1.46895 * 111.00463 * 293.95667 * 7 6 4 9 9 C 1.50705 * 109.46662 * 297.01451 * 8 7 6 10 10 H 1.07994 * 120.00403 * 4.60112 * 9 8 7 11 11 C 1.37884 * 119.99680 * 184.60543 * 9 8 7 12 12 N 1.31511 * 120.00169 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99824 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47335 * 59.99589 * 13 11 9 15 15 H 1.48495 * 109.47045 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47198 * 299.99948 * 13 11 9 17 17 C 1.46895 * 110.99793 * 169.99770 * 7 6 4 18 18 C 1.52998 * 109.47390 * 199.70769 * 17 7 6 19 19 H 1.08996 * 109.64000 * 305.81125 * 18 17 7 20 20 C 1.53033 * 109.64037 * 66.44604 * 18 17 7 21 21 C 1.50071 * 110.14439 * 169.12016 * 20 18 17 22 22 C 1.29437 * 124.07700 * 342.86946 * 21 20 18 23 23 C 1.50062 * 124.07972 * 0.46870 * 22 21 20 24 24 C 1.53025 * 110.14454 * 342.86958 * 23 22 21 25 25 H 1.09000 * 109.46626 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46801 * 299.99505 * 1 2 3 27 27 H 1.08994 * 109.46866 * 59.99592 * 1 2 3 28 28 H 1.08993 * 109.47217 * 240.00227 * 2 1 3 29 29 H 1.08995 * 109.47409 * 119.99876 * 2 1 3 30 30 H 1.08995 * 109.47133 * 60.00499 * 6 4 3 31 31 H 1.08999 * 109.47259 * 299.99967 * 6 4 3 32 32 H 1.09003 * 109.47248 * 57.00815 * 8 7 6 33 33 H 1.08999 * 109.47495 * 177.01135 * 8 7 6 34 34 H 0.96995 * 120.00249 * 180.02562 * 12 11 9 35 35 H 1.09002 * 109.47632 * 319.71200 * 17 7 6 36 36 H 1.09005 * 109.46984 * 79.70848 * 17 7 6 37 37 H 1.09002 * 109.35682 * 289.32530 * 20 18 17 38 38 H 1.08997 * 109.35671 * 48.91303 * 20 18 17 39 39 H 1.08006 * 117.95775 * 162.88806 * 21 20 18 40 40 H 1.08002 * 117.95744 * 180.48999 * 22 21 20 41 41 H 1.09000 * 109.36027 * 222.66214 * 23 22 21 42 42 H 1.09004 * 109.24780 * 103.00365 * 23 22 21 43 43 H 1.08996 * 109.64553 * 289.74838 * 24 23 22 44 44 H 1.09003 * 109.81608 * 169.22219 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 7 5.3877 2.8606 -0.0001 8 6 5.8845 2.2765 1.2528 9 6 5.5083 3.1694 2.4071 10 1 4.8925 4.0403 2.2378 11 6 5.9505 2.8745 3.6793 12 7 6.7001 1.8138 3.8856 13 14 5.4849 3.9817 5.1100 14 1 4.0065 4.0217 5.2443 15 1 6.0810 3.4499 6.3618 16 1 5.9965 5.3534 4.8613 17 6 5.9840 4.1819 -0.2378 18 6 7.4276 4.0115 -0.7152 19 1 7.9788 3.3970 -0.0034 20 6 7.4386 3.3457 -2.0930 21 6 8.8148 3.4113 -2.6879 22 6 9.7455 4.2111 -2.2760 23 6 9.5817 5.1774 -1.1397 24 6 8.0967 5.3866 -0.8357 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8899 30 1 3.5852 3.4691 0.8905 31 1 3.5843 3.4702 -0.8895 32 1 5.4401 1.2914 1.3957 33 1 6.9693 2.1822 1.2048 34 1 7.0109 1.6062 4.7807 35 1 5.4091 4.7084 -0.9997 36 1 5.9730 4.7573 0.6879 37 1 7.1377 2.3028 -1.9927 38 1 6.7366 3.8607 -2.7487 39 1 9.0427 2.7502 -3.5110 40 1 10.6992 4.1813 -2.7820 41 1 10.0333 6.1321 -1.4093 42 1 10.0791 4.7795 -0.2551 43 1 7.6327 5.9502 -1.6451 44 1 7.9846 5.9319 0.1015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201426393.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:20 Heat of formation + Delta-G solvation = -81.552563 kcal Electronic energy + Delta-G solvation = -22916.397511 eV Core-core repulsion = 19640.619828 eV Total energy + Delta-G solvation = -3275.777683 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.88636 -38.51182 -36.67556 -35.44856 -32.52922 -31.66237 -31.17058 -30.33189 -27.91480 -26.45326 -24.30358 -23.08279 -22.70731 -21.68685 -20.28654 -19.40505 -17.47977 -17.15789 -16.56359 -16.19959 -15.61224 -15.37255 -14.79391 -14.50631 -14.13089 -13.95856 -13.58619 -13.12001 -12.88112 -12.77611 -12.64482 -12.30355 -12.19664 -11.97916 -11.78279 -11.61810 -11.34957 -11.16469 -11.01475 -10.90942 -10.80356 -10.46017 -10.18991 -10.10112 -10.03070 -9.90461 -9.68186 -9.61092 -9.34230 -8.64789 -8.37187 -7.22219 -6.00977 -4.10406 2.60687 2.94922 3.12088 3.27297 3.33146 3.34220 4.39827 4.88646 5.07910 5.09309 5.12916 5.16721 5.28628 5.32130 5.42272 5.45795 5.66304 5.69324 5.74142 5.83924 5.87031 5.89874 5.96325 6.00921 6.05111 6.16423 6.18899 6.20176 6.33250 6.42567 6.53985 6.66621 6.78802 6.95039 6.99217 7.03671 7.27880 7.29868 7.59513 7.95929 7.97970 8.25265 8.28330 8.53010 8.99694 9.55046 11.04003 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.010634 B = 0.006379 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.416801 B = 4388.031596 C = 6408.718303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.370 6.370 4 C 0.465 3.535 5 O -0.484 6.484 6 C 0.070 3.930 7 N -0.527 5.527 8 C 0.179 3.821 9 C -0.556 4.556 10 H 0.055 0.945 11 C 0.068 3.932 12 N -0.885 5.885 13 Si 0.885 3.115 14 H -0.278 1.278 15 H -0.286 1.286 16 H -0.277 1.277 17 C 0.067 3.933 18 C -0.076 4.076 19 H 0.080 0.920 20 C -0.077 4.077 21 C -0.147 4.147 22 C -0.168 4.168 23 C -0.087 4.087 24 C -0.113 4.113 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.047 0.953 33 H 0.037 0.963 34 H 0.262 0.738 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.203 3.340 -10.800 12.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.288 6.288 4 C 0.306 3.694 5 O -0.369 6.369 6 C -0.059 4.059 7 N -0.252 5.252 8 C 0.053 3.947 9 C -0.595 4.595 10 H 0.073 0.927 11 C -0.135 4.135 12 N -0.523 5.523 13 Si 0.713 3.287 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 C -0.061 4.061 18 C -0.095 4.095 19 H 0.099 0.901 20 C -0.114 4.114 21 C -0.165 4.165 22 C -0.186 4.186 23 C -0.124 4.124 24 C -0.151 4.151 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.750 2.575 -11.048 11.947 hybrid contribution -0.323 0.829 1.610 1.839 sum -4.073 3.404 -9.437 10.828 Atomic orbital electron populations 1.21780 0.93249 1.02449 1.03224 1.22868 0.94756 0.81212 1.02351 1.86477 1.25716 1.31537 1.85077 1.23801 0.79702 0.93338 0.72519 1.90626 1.59800 1.42991 1.43456 1.21423 0.91811 0.89584 1.03088 1.62267 1.01673 1.21822 1.39412 1.19986 0.96768 0.95658 0.82241 1.21700 1.32993 1.11128 0.93659 0.92686 1.24925 0.94853 0.95059 0.98693 1.69944 1.34653 1.25756 1.21990 0.86768 0.78763 0.81057 0.82101 1.20316 1.21206 1.20212 1.22015 0.94003 0.90515 0.99600 1.21103 0.96036 0.95631 0.96684 0.90136 1.20409 0.93159 1.02321 0.95523 1.22214 0.96404 0.98198 0.99668 1.21973 0.98607 0.98878 0.99160 1.20401 0.97224 0.97745 0.97078 1.21607 0.94707 0.97569 1.01230 0.90713 0.91594 0.91791 0.91716 0.91424 0.89967 0.88979 0.93452 0.94448 0.92772 0.93138 0.92609 0.90049 0.91786 0.88763 0.88856 0.91863 0.91030 0.92443 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.29 37.16 0.38 -1.19 16 2 C 0.06 0.89 6.19 37.16 0.23 1.12 16 3 O -0.37 -6.41 10.22 -39.28 -0.40 -6.81 16 4 C 0.46 9.31 7.66 36.01 0.28 9.58 16 5 O -0.48 -11.23 14.07 -18.74 -0.26 -11.49 16 6 C 0.07 1.32 5.36 -4.97 -0.03 1.30 16 7 N -0.53 -11.00 4.10 -237.52 -0.97 -11.98 16 8 C 0.18 4.61 4.66 -4.98 -0.02 4.59 16 9 C -0.56 -14.93 7.26 -34.44 -0.25 -15.18 16 10 H 0.06 1.42 6.01 -52.49 -0.32 1.11 16 11 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 12 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 13 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 C 0.07 1.22 4.22 -3.83 -0.02 1.20 16 18 C -0.08 -1.30 2.29 -90.40 -0.21 -1.51 16 19 H 0.08 1.65 6.74 -51.93 -0.35 1.30 16 20 C -0.08 -1.21 5.23 -28.17 -0.15 -1.36 16 21 C -0.15 -2.10 9.80 -35.90 -0.35 -2.45 16 22 C -0.17 -2.29 9.80 -35.90 -0.35 -2.64 16 23 C -0.09 -1.18 6.12 -28.18 -0.17 -1.36 16 24 C -0.11 -1.65 5.31 -26.51 -0.14 -1.79 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 29 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 30 H 0.08 1.63 6.41 -51.93 -0.33 1.29 16 31 H 0.09 1.41 7.83 -51.93 -0.41 1.00 16 32 H 0.05 1.38 5.84 -51.93 -0.30 1.08 16 33 H 0.04 1.05 6.77 -51.93 -0.35 0.70 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.05 0.79 7.68 -51.93 -0.40 0.39 16 36 H 0.06 1.13 6.29 -51.93 -0.33 0.81 16 37 H 0.08 1.43 8.09 -51.93 -0.42 1.01 16 38 H 0.06 0.93 8.06 -51.93 -0.42 0.51 16 39 H 0.09 1.21 8.06 -52.48 -0.42 0.79 16 40 H 0.09 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 349.56 15.07 5.27 5.27 Total: -1.00 -30.68 349.56 -8.96 -39.64 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -7.41 Total: 2.55 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -0.90 Total: -7.88 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: -0.24 Total: -37.48 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.67 Total: -18.30 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.68 -8.96 -39.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201426393.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.914 kcal (2) G-P(sol) polarization free energy of solvation -30.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds