Wall clock time and date at job start Tue Mar 31 2020 06:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45202 * 109.46798 * 2 1 4 4 C 1.34238 * 116.99530 * 180.02562 * 3 2 1 5 5 O 1.20817 * 120.00046 * 359.97438 * 4 3 2 6 6 C 1.50707 * 119.99370 * 180.02562 * 4 3 2 7 7 N 1.46901 * 109.46557 * 179.97438 * 6 4 3 8 8 C 1.46895 * 111.00463 * 293.95667 * 7 6 4 9 9 C 1.50705 * 109.46662 * 297.01451 * 8 7 6 10 10 H 1.07994 * 120.00403 * 4.60112 * 9 8 7 11 11 C 1.37884 * 119.99680 * 184.60543 * 9 8 7 12 12 N 1.31511 * 120.00169 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99824 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47335 * 59.99589 * 13 11 9 15 15 H 1.48495 * 109.47045 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47198 * 299.99948 * 13 11 9 17 17 C 1.46895 * 110.99793 * 169.99770 * 7 6 4 18 18 C 1.52998 * 109.47390 * 199.70769 * 17 7 6 19 19 H 1.08996 * 109.64000 * 305.81125 * 18 17 7 20 20 C 1.53033 * 109.64037 * 66.44604 * 18 17 7 21 21 C 1.50071 * 110.14439 * 169.12016 * 20 18 17 22 22 C 1.29437 * 124.07700 * 342.86946 * 21 20 18 23 23 C 1.50062 * 124.07972 * 0.46870 * 22 21 20 24 24 C 1.53025 * 110.14454 * 342.86958 * 23 22 21 25 25 H 1.09000 * 109.46626 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46801 * 299.99505 * 1 2 3 27 27 H 1.08994 * 109.46866 * 59.99592 * 1 2 3 28 28 H 1.08993 * 109.47217 * 240.00227 * 2 1 3 29 29 H 1.08995 * 109.47409 * 119.99876 * 2 1 3 30 30 H 1.08995 * 109.47133 * 60.00499 * 6 4 3 31 31 H 1.08999 * 109.47259 * 299.99967 * 6 4 3 32 32 H 1.09003 * 109.47248 * 57.00815 * 8 7 6 33 33 H 1.08999 * 109.47495 * 177.01135 * 8 7 6 34 34 H 0.96995 * 120.00249 * 180.02562 * 12 11 9 35 35 H 1.09002 * 109.47632 * 319.71200 * 17 7 6 36 36 H 1.09005 * 109.46984 * 79.70848 * 17 7 6 37 37 H 1.09002 * 109.35682 * 289.32530 * 20 18 17 38 38 H 1.08997 * 109.35671 * 48.91303 * 20 18 17 39 39 H 1.08006 * 117.95775 * 162.88806 * 21 20 18 40 40 H 1.08002 * 117.95744 * 180.48999 * 22 21 20 41 41 H 1.09000 * 109.36027 * 222.66214 * 23 22 21 42 42 H 1.09004 * 109.24780 * 103.00365 * 23 22 21 43 43 H 1.08996 * 109.64553 * 289.74838 * 24 23 22 44 44 H 1.09003 * 109.81608 * 169.22219 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 7 5.3877 2.8606 -0.0001 8 6 5.8845 2.2765 1.2528 9 6 5.5083 3.1694 2.4071 10 1 4.8925 4.0403 2.2378 11 6 5.9505 2.8745 3.6793 12 7 6.7001 1.8138 3.8856 13 14 5.4849 3.9817 5.1100 14 1 4.0065 4.0217 5.2443 15 1 6.0810 3.4499 6.3618 16 1 5.9965 5.3534 4.8613 17 6 5.9840 4.1819 -0.2378 18 6 7.4276 4.0115 -0.7152 19 1 7.9788 3.3970 -0.0034 20 6 7.4386 3.3457 -2.0930 21 6 8.8148 3.4113 -2.6879 22 6 9.7455 4.2111 -2.2760 23 6 9.5817 5.1774 -1.1397 24 6 8.0967 5.3866 -0.8357 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8899 30 1 3.5852 3.4691 0.8905 31 1 3.5843 3.4702 -0.8895 32 1 5.4401 1.2914 1.3957 33 1 6.9693 2.1822 1.2048 34 1 7.0109 1.6062 4.7807 35 1 5.4091 4.7084 -0.9997 36 1 5.9730 4.7573 0.6879 37 1 7.1377 2.3028 -1.9927 38 1 6.7366 3.8607 -2.7487 39 1 9.0427 2.7502 -3.5110 40 1 10.6992 4.1813 -2.7820 41 1 10.0333 6.1321 -1.4093 42 1 10.0791 4.7795 -0.2551 43 1 7.6327 5.9502 -1.6451 44 1 7.9846 5.9319 0.1015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201426393.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:19 Heat of formation + Delta-G solvation = -99.144239 kcal Electronic energy + Delta-G solvation = -22917.160343 eV Core-core repulsion = 19640.619828 eV Total energy + Delta-G solvation = -3276.540515 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.43895 -39.84615 -38.16236 -37.05400 -34.60153 -32.86242 -32.41384 -31.49756 -29.72820 -28.11249 -26.00358 -24.49566 -23.91380 -23.07408 -21.70954 -21.07177 -18.83847 -18.66981 -18.40766 -17.66108 -17.13360 -16.67649 -16.56667 -16.04246 -15.80725 -15.21238 -14.99686 -14.61248 -14.24270 -14.13576 -14.02490 -13.59404 -13.41651 -13.25219 -13.14816 -12.96650 -12.93730 -12.73450 -12.57322 -12.47038 -12.38078 -12.17756 -12.02769 -11.78051 -11.45867 -11.38492 -11.23465 -11.04831 -10.87399 -10.52900 -9.76200 -9.00921 -8.12786 -6.32985 1.36323 1.36475 1.38432 1.45877 1.51124 1.73435 2.37112 3.11759 3.35662 3.92663 3.93446 3.95335 4.01674 4.10770 4.14996 4.36478 4.38919 4.44332 4.52771 4.57165 4.64969 4.67722 4.79442 4.85846 4.89691 4.94625 5.03961 5.09792 5.14743 5.15954 5.20102 5.30485 5.31363 5.39549 5.51283 5.55554 5.63206 5.83317 5.89150 6.01445 6.17581 6.22050 6.49031 6.88574 6.96991 7.37692 8.89699 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.010634 B = 0.006379 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.416801 B = 4388.031596 C = 6408.718303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.052 3.948 3 O -0.365 6.365 4 C 0.464 3.536 5 O -0.526 6.526 6 C 0.068 3.932 7 N -0.530 5.530 8 C 0.202 3.798 9 C -0.556 4.556 10 H 0.067 0.933 11 C 0.009 3.991 12 N -0.929 5.929 13 Si 0.956 3.044 14 H -0.268 1.268 15 H -0.287 1.287 16 H -0.264 1.264 17 C 0.069 3.931 18 C -0.074 4.074 19 H 0.033 0.967 20 C -0.070 4.070 21 C -0.163 4.163 22 C -0.165 4.165 23 C -0.090 4.090 24 C -0.108 4.108 25 H 0.100 0.900 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.139 0.861 32 H 0.008 0.992 33 H 0.001 0.999 34 H 0.262 0.738 35 H 0.089 0.911 36 H 0.035 0.965 37 H 0.053 0.947 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.115 0.885 41 H 0.090 0.910 42 H 0.058 0.942 43 H 0.079 0.921 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.496 5.607 -12.043 14.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.022 4.022 3 O -0.282 6.282 4 C 0.307 3.693 5 O -0.414 6.414 6 C -0.060 4.060 7 N -0.254 5.254 8 C 0.075 3.925 9 C -0.595 4.595 10 H 0.085 0.915 11 C -0.190 4.190 12 N -0.568 5.568 13 Si 0.780 3.220 14 H -0.193 1.193 15 H -0.213 1.213 16 H -0.189 1.189 17 C -0.059 4.059 18 C -0.093 4.093 19 H 0.052 0.948 20 C -0.107 4.107 21 C -0.181 4.181 22 C -0.183 4.183 23 C -0.127 4.127 24 C -0.146 4.146 25 H 0.119 0.881 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.156 0.844 32 H 0.026 0.974 33 H 0.019 0.981 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.127 0.873 40 H 0.133 0.867 41 H 0.109 0.891 42 H 0.076 0.924 43 H 0.098 0.902 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.077 4.868 -12.310 14.178 hybrid contribution 0.042 0.068 1.943 1.945 sum -5.034 4.936 -10.367 12.537 Atomic orbital electron populations 1.21796 0.89705 1.04376 1.03818 1.23226 0.97466 0.79668 1.01818 1.86471 1.24032 1.33379 1.84348 1.24107 0.80365 0.93387 0.71445 1.90618 1.60941 1.44299 1.45508 1.21594 0.90175 0.89380 1.04892 1.62125 1.03327 1.23498 1.36437 1.19443 0.94207 0.94267 0.84587 1.22008 1.32376 1.11169 0.93985 0.91520 1.25854 0.94828 0.96482 1.01839 1.70108 1.36260 1.27894 1.22563 0.85645 0.78754 0.79327 0.78234 1.19319 1.21271 1.18862 1.22106 0.95112 0.88904 0.99748 1.21033 0.95063 0.96828 0.96415 0.94804 1.20287 0.94866 1.00613 0.94926 1.22275 0.95872 0.99260 1.00672 1.22199 0.99248 0.98151 0.98667 1.20456 0.96459 0.99126 0.96681 1.21575 0.95443 0.95746 1.01812 0.88121 0.91616 0.90508 0.91306 0.93098 0.90549 0.84388 0.97361 0.98135 0.92876 0.89321 0.94681 0.92813 0.89953 0.87270 0.86659 0.89143 0.92387 0.90199 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 10.29 71.98 0.74 -1.89 16 2 C 0.05 1.47 6.19 71.98 0.45 1.92 16 3 O -0.37 -12.44 10.22 -51.49 -0.53 -12.97 16 4 C 0.46 18.76 7.66 71.24 0.55 19.30 16 5 O -0.53 -25.46 14.07 21.99 0.31 -25.16 16 6 C 0.07 2.52 5.36 85.56 0.46 2.98 16 7 N -0.53 -22.53 4.10 -905.37 -3.71 -26.24 16 8 C 0.20 10.97 4.66 85.56 0.40 11.37 16 9 C -0.56 -30.63 7.26 25.60 0.19 -30.44 16 10 H 0.07 3.45 6.01 -2.91 -0.02 3.43 16 11 C 0.01 0.52 5.46 84.66 0.46 0.98 16 12 N -0.93 -57.27 13.29 21.45 0.28 -56.99 16 13 Si 0.96 43.93 29.54 68.60 2.03 45.95 16 14 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 15 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 16 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 17 C 0.07 2.47 4.22 86.30 0.36 2.83 16 18 C -0.07 -2.58 2.29 -10.65 -0.02 -2.60 16 19 H 0.03 1.48 6.74 -2.39 -0.02 1.46 16 20 C -0.07 -2.17 5.23 29.66 0.16 -2.01 16 21 C -0.16 -4.45 9.80 27.04 0.27 -4.19 16 22 C -0.16 -4.18 9.80 27.04 0.27 -3.91 16 23 C -0.09 -2.30 6.12 29.66 0.18 -2.12 16 24 C -0.11 -3.00 5.31 30.73 0.16 -2.84 16 25 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.07 1.88 8.13 -2.39 -0.02 1.86 16 29 H 0.05 1.60 8.13 -2.39 -0.02 1.58 16 30 H 0.08 2.95 6.41 -2.39 -0.02 2.94 16 31 H 0.14 3.80 7.83 -2.39 -0.02 3.78 16 32 H 0.01 0.52 5.84 -2.39 -0.01 0.50 16 33 H 0.00 0.03 6.77 -2.39 -0.02 0.02 16 34 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 35 H 0.09 2.52 7.68 -2.39 -0.02 2.51 16 36 H 0.03 1.41 6.29 -2.38 -0.01 1.40 16 37 H 0.05 1.95 8.09 -2.39 -0.02 1.93 16 38 H 0.08 2.21 8.06 -2.39 -0.02 2.20 16 39 H 0.11 2.63 8.06 -2.91 -0.02 2.61 16 40 H 0.12 2.43 8.06 -2.91 -0.02 2.40 16 41 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.08 1.88 8.12 -2.39 -0.02 1.86 16 44 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -70.34 349.56 3.95 -66.39 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.96 Total: 19.63 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: 4.61 Total: -10.62 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -3.43 Total: -83.23 kcal Atomic # 8 Polarization: -37.90 SS G_CDS: -0.22 Total: -38.12 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -70.34 3.95 -66.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201426393.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.753 kcal (2) G-P(sol) polarization free energy of solvation -70.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds