Wall clock time and date at job start Tue Mar 31 2020 06:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20826 * 119.99712 * 359.72483 * 3 2 1 5 5 C 1.50700 * 120.00068 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.46550 * 59.99877 * 5 3 2 7 7 C 1.52994 * 109.46890 * 179.97438 * 5 3 2 8 8 C 1.53005 * 109.46910 * 179.97438 * 7 5 3 9 9 C 1.52997 * 109.47120 * 300.00311 * 8 7 5 10 10 H 1.08999 * 109.47264 * 299.99272 * 9 8 7 11 11 C 1.53005 * 109.46797 * 179.97438 * 9 8 7 12 12 N 1.46908 * 109.46974 * 174.99734 * 11 9 8 13 13 C 1.47474 * 110.99940 * 265.97367 * 12 11 9 14 14 C 1.53515 * 87.93026 * 221.29550 * 13 12 11 15 15 C 1.50698 * 114.34321 * 139.68602 * 14 13 12 16 16 H 1.08004 * 119.99469 * 266.07729 * 15 14 13 17 17 C 1.37876 * 120.00154 * 86.07688 * 15 14 13 18 18 N 1.31512 * 120.00190 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99887 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47426 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46909 * 119.99869 * 19 17 15 22 22 H 1.48492 * 109.47463 * 239.99937 * 19 17 15 23 23 C 1.47471 * 110.99878 * 169.99704 * 12 11 9 24 24 C 1.53004 * 109.47448 * 59.99971 * 9 8 7 25 25 C 1.52997 * 109.47048 * 300.00099 * 5 3 2 26 26 H 1.08995 * 109.47281 * 180.02562 * 1 2 3 27 27 H 1.09012 * 109.47257 * 300.00032 * 1 2 3 28 28 H 1.08996 * 109.47465 * 60.00089 * 1 2 3 29 29 H 1.09000 * 109.47301 * 299.99645 * 7 5 3 30 30 H 1.08999 * 109.47498 * 60.00613 * 7 5 3 31 31 H 1.09002 * 109.47168 * 60.00243 * 8 7 5 32 32 H 1.08998 * 109.47075 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47096 * 294.99564 * 11 9 8 34 34 H 1.08995 * 109.47345 * 55.00048 * 11 9 8 35 35 H 1.08996 * 113.47816 * 336.06006 * 13 12 11 36 36 H 1.09001 * 113.47854 * 106.52812 * 13 12 11 37 37 H 1.09000 * 114.16947 * 272.37979 * 14 13 12 38 38 H 0.96991 * 120.00136 * 179.97438 * 18 17 15 39 39 H 1.08998 * 113.48220 * 253.47012 * 23 12 11 40 40 H 1.09004 * 113.47697 * 23.94066 * 23 12 11 41 41 H 1.08997 * 109.46955 * 59.99513 * 24 9 8 42 42 H 1.08989 * 109.46919 * 179.97438 * 24 9 8 43 43 H 1.09002 * 109.47045 * 300.00076 * 25 5 3 44 44 H 1.08998 * 109.47244 * 60.00058 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0050 5 6 3.5663 1.2749 -0.0006 6 1 3.9556 0.7810 -0.8908 7 6 4.0000 2.7421 -0.0011 8 6 5.5280 2.8222 -0.0011 9 6 6.0749 2.1291 1.2484 10 1 5.6853 2.6235 2.1382 11 6 7.6029 2.2087 1.2481 12 7 8.1226 1.6503 2.5036 13 6 8.3352 2.7111 3.5058 14 6 9.6470 2.0107 3.8872 15 6 10.7956 2.9479 4.1580 16 1 11.4873 3.1970 3.3669 17 6 10.9634 3.4873 5.4157 18 7 10.1208 3.1844 6.3790 19 14 12.3875 4.6485 5.7516 20 1 13.1841 4.8267 4.5111 21 1 11.8597 5.9643 6.1936 22 1 13.2506 4.0783 6.8169 23 6 9.5874 1.4899 2.4443 24 6 5.6412 0.6618 1.2489 25 6 4.1138 0.5811 1.2483 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 3.6100 3.2360 -0.8911 30 1 3.6107 3.2365 0.8889 31 1 5.9178 2.3279 -0.8909 32 1 5.8370 3.8675 -0.0019 33 1 7.9963 1.6385 0.4065 34 1 7.9125 3.2499 1.1580 35 1 8.4815 3.6986 3.0684 36 1 7.5936 2.7088 4.3046 37 1 9.5352 1.2363 4.6461 38 1 10.2390 3.5636 7.2638 39 1 9.9070 0.4527 2.3435 40 1 10.0679 2.1517 1.7236 41 1 6.0309 0.1675 0.3591 42 1 6.0313 0.1680 2.1388 43 1 3.7244 1.0750 2.1385 44 1 3.8048 -0.4641 1.2482 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208625377.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:21 Heat of formation + Delta-G solvation = -78.820540 kcal Electronic energy + Delta-G solvation = -22229.863086 eV Core-core repulsion = 18954.203872 eV Total energy + Delta-G solvation = -3275.659214 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.87950 -39.24486 -37.96824 -36.58376 -33.14498 -32.15238 -30.80218 -28.89085 -27.74920 -25.62816 -24.73900 -23.54357 -22.65468 -21.64027 -20.27731 -19.69086 -18.55500 -17.71413 -16.91653 -16.62671 -16.55689 -15.13977 -14.86431 -14.62283 -14.25209 -14.12050 -14.03283 -13.56348 -13.54378 -13.11991 -12.75992 -12.35637 -12.26316 -12.17421 -11.77865 -11.66968 -11.33025 -11.29262 -11.13787 -11.03596 -10.99578 -10.77810 -10.57171 -10.42893 -10.25140 -10.14693 -9.96536 -9.59119 -9.12965 -8.90714 -8.43264 -7.94076 -6.05082 -4.09308 2.01459 2.51140 3.27722 3.36149 3.39541 4.39006 4.41314 4.56803 4.62008 4.81861 4.83485 4.90165 5.05588 5.10312 5.24210 5.24837 5.29970 5.31160 5.46523 5.54515 5.57060 5.70883 5.85494 5.95364 6.00286 6.05966 6.12669 6.14060 6.16621 6.20326 6.33893 6.41369 6.51481 6.56244 6.62180 6.70646 6.83541 7.16914 7.24286 7.54831 7.74042 7.92774 8.12734 8.38841 8.94227 9.55694 11.04550 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.038490 B = 0.002857 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.287721 B = 9797.877877 C = 9833.141383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.464 3.536 4 O -0.509 6.509 5 C -0.078 4.078 6 H 0.108 0.892 7 C -0.101 4.101 8 C -0.114 4.114 9 C -0.079 4.079 10 H 0.071 0.929 11 C 0.025 3.975 12 N -0.482 5.482 13 C 0.005 3.995 14 C 0.040 3.960 15 C -0.515 4.515 16 H 0.057 0.943 17 C 0.066 3.934 18 N -0.886 5.886 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.005 4.005 24 C -0.102 4.102 25 C -0.110 4.110 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.038 0.962 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.261 0.739 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.084 0.916 43 H 0.067 0.933 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.188 -5.578 -13.607 21.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.308 3.692 4 O -0.397 6.397 5 C -0.097 4.097 6 H 0.125 0.875 7 C -0.138 4.138 8 C -0.152 4.152 9 C -0.098 4.098 10 H 0.090 0.910 11 C -0.104 4.104 12 N -0.204 5.204 13 C -0.124 4.124 14 C 0.021 3.979 15 C -0.553 4.553 16 H 0.075 0.925 17 C -0.137 4.137 18 N -0.524 5.524 19 Si 0.718 3.282 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.134 4.134 24 C -0.140 4.140 25 C -0.148 4.148 26 H 0.119 0.881 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.103 0.897 43 H 0.085 0.915 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.923 -5.821 -13.305 21.551 hybrid contribution 0.828 1.541 -0.096 1.753 sum -15.095 -4.280 -13.402 20.634 Atomic orbital electron populations 1.23253 0.76639 1.03616 1.02463 1.86531 1.23210 1.33717 1.84056 1.24066 0.92329 0.81135 0.71711 1.90655 1.67307 1.36430 1.45289 1.21193 0.85989 0.99984 1.02510 0.87450 1.21431 0.96251 0.92863 1.03304 1.21597 0.93883 1.01103 0.98575 1.21080 0.95159 0.95986 0.97607 0.91025 1.22651 0.94664 0.98216 0.94844 1.68785 1.13383 1.32299 1.05961 1.24078 1.00884 0.93068 0.94345 1.20095 0.92238 0.95134 0.90390 1.21082 1.11349 1.27076 0.95844 0.92462 1.25020 0.96036 0.96454 0.96158 1.69973 1.36311 1.43805 1.02276 0.86574 0.82551 0.80787 0.78315 1.19749 1.21014 1.20916 1.23970 0.88302 0.99708 1.01434 1.21454 0.92668 0.96631 1.03210 1.21573 0.97453 1.00415 0.95367 0.88140 0.91927 0.92043 0.91356 0.90984 0.91865 0.91436 0.92188 0.94327 0.93025 0.91999 0.91902 0.92944 0.92174 0.93026 0.92304 0.89704 0.91472 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.73 10.47 -39.27 -0.41 -4.14 16 3 C 0.46 5.42 7.26 36.01 0.26 5.68 16 4 O -0.51 -7.23 15.73 -18.75 -0.29 -7.53 16 5 C -0.08 -0.80 2.63 -91.78 -0.24 -1.04 16 6 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 7 C -0.10 -1.09 4.49 -26.73 -0.12 -1.21 16 8 C -0.11 -1.25 5.20 -26.73 -0.14 -1.39 16 9 C -0.08 -1.06 2.40 -90.62 -0.22 -1.28 16 10 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 11 C 0.03 0.40 4.21 -3.82 -0.02 0.39 16 12 N -0.48 -9.32 5.78 -244.65 -1.42 -10.74 16 13 C 0.01 0.12 7.28 -7.55 -0.05 0.06 16 14 C 0.04 1.00 3.76 -91.24 -0.34 0.66 16 15 C -0.52 -13.97 8.83 -34.44 -0.30 -14.27 16 16 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 17 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 18 N -0.89 -25.52 13.26 55.43 0.74 -24.79 16 19 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C -0.01 -0.11 7.25 -7.55 -0.05 -0.17 16 24 C -0.10 -1.24 5.09 -26.75 -0.14 -1.38 16 25 C -0.11 -1.18 5.13 -26.76 -0.14 -1.32 16 26 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 28 H 0.06 0.45 8.13 -51.93 -0.42 0.02 16 29 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 30 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.89 8.08 -51.93 -0.42 0.47 16 34 H 0.04 0.64 7.30 -51.93 -0.38 0.26 16 35 H 0.05 1.18 7.38 -51.93 -0.38 0.80 16 36 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.06 1.72 8.11 -51.93 -0.42 1.29 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.05 1.05 7.87 -51.93 -0.41 0.65 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 1.20 7.75 -51.94 -0.40 0.80 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 LS Contribution 352.11 15.07 5.31 5.31 Total: -1.00 -29.61 352.11 -9.51 -39.12 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -7.87 Total: -1.00 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -0.53 Total: -12.23 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: -0.68 Total: -35.52 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: -0.71 Total: -11.67 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.61 -9.51 -39.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208625377.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.700 kcal (2) G-P(sol) polarization free energy of solvation -29.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds