Wall clock time and date at job start Tue Mar 31 2020 06:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48613 * 111.00305 * 2 1 4 4 H 1.09000 * 112.06759 * 42.30406 * 3 2 1 5 5 C 1.54464 * 104.51508 * 280.16610 * 3 2 1 6 6 C 1.54215 * 105.06493 * 336.02106 * 5 3 2 7 7 H 1.09006 * 110.40726 * 241.05803 * 6 5 3 8 8 O 1.42890 * 110.32540 * 118.89530 * 6 5 3 9 9 C 1.42907 * 114.00225 * 94.35830 * 8 6 5 10 10 C 1.53003 * 109.47094 * 179.97438 * 9 8 6 11 11 C 1.52994 * 109.46838 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47119 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47159 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 12 11 16 16 N 1.31514 * 119.99985 * 180.27663 * 15 13 12 17 17 Si 1.86800 * 119.99777 * 0.28166 * 15 13 12 18 18 H 1.48498 * 109.47109 * 89.99834 * 17 15 13 19 19 H 1.48507 * 109.46754 * 209.99574 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99405 * 17 15 13 21 21 C 1.48614 * 111.00100 * 244.63150 * 2 1 3 22 22 H 1.09002 * 112.54383 * 318.00830 * 21 2 1 23 23 C 1.53898 * 107.39409 * 194.32540 * 21 2 1 24 24 C 1.51526 * 107.76922 * 301.85015 * 23 21 2 25 25 O 1.20762 * 121.00446 * 225.55273 * 24 23 21 26 26 C 1.51519 * 117.99309 * 45.53806 * 24 23 21 27 27 H 1.09003 * 109.47301 * 175.36702 * 1 2 3 28 28 H 1.09002 * 109.46971 * 295.36795 * 1 2 3 29 29 H 1.09001 * 109.47341 * 55.36760 * 1 2 3 30 30 H 1.09005 * 110.32120 * 217.12239 * 5 3 2 31 31 H 1.09002 * 110.32365 * 94.91784 * 5 3 2 32 32 H 1.08998 * 109.46787 * 60.00385 * 9 8 6 33 33 H 1.09002 * 109.46630 * 299.99961 * 9 8 6 34 34 H 1.08998 * 109.46943 * 60.00537 * 10 9 8 35 35 H 1.08994 * 109.47116 * 300.00148 * 10 9 8 36 36 H 1.09004 * 109.46806 * 60.00265 * 11 10 9 37 37 H 1.09000 * 109.47828 * 300.00570 * 11 10 9 38 38 H 1.09004 * 109.47066 * 60.00422 * 12 11 10 39 39 H 1.08994 * 109.47405 * 300.00252 * 12 11 10 40 40 H 0.96996 * 119.99730 * 180.02562 * 16 15 13 41 41 H 1.08997 * 109.79824 * 61.41847 * 23 21 2 42 42 H 1.09000 * 109.80266 * 182.28798 * 23 21 2 43 43 H 1.08996 * 109.80903 * 74.02573 * 26 24 23 44 44 H 1.08996 * 109.80173 * 194.90177 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0016 1.3874 0.0000 4 1 1.4509 2.0375 0.6799 5 6 1.8940 1.8434 -1.4719 6 6 1.8939 0.5401 -2.2963 7 1 2.7499 0.5169 -2.9708 8 8 0.6771 0.4207 -3.0358 9 6 0.7585 0.9177 -4.3732 10 6 -0.5936 0.7392 -5.0668 11 6 -0.5065 1.2718 -6.4984 12 6 -1.8587 1.0939 -7.1918 13 6 -1.7728 1.6180 -8.6022 14 1 -0.8463 2.0358 -8.9675 15 6 -2.8752 1.5585 -9.4281 16 7 -2.7987 2.0109 -10.6606 17 14 -4.4775 0.8353 -8.7964 18 1 -5.3006 1.9114 -8.1885 19 1 -5.2219 0.2203 -9.9247 20 1 -4.1839 -0.2009 -7.7739 21 6 2.0016 -0.5944 -1.2536 22 1 1.4528 -1.4850 -1.5599 23 6 3.4949 -0.8883 -1.0253 24 6 4.1722 0.4167 -0.6587 25 8 5.2200 0.7377 -1.1662 26 6 3.4950 1.3068 0.3634 27 1 -0.3634 -1.0243 -0.0830 28 1 -0.3633 0.4403 0.9286 29 1 -0.3634 0.5840 -0.8456 30 1 2.7510 2.4612 -1.7404 31 1 0.9658 2.3923 -1.6312 32 1 1.5227 0.3654 -4.9201 33 1 1.0197 1.9758 -4.3523 34 1 -1.3581 1.2912 -4.5201 35 1 -0.8543 -0.3189 -5.0876 36 1 0.2581 0.7202 -7.0454 37 1 -0.2459 2.3300 -6.4773 38 1 -2.6230 1.6458 -6.6447 39 1 -2.1197 0.0359 -7.2131 40 1 -3.5744 1.9693 -11.2415 41 1 3.6100 -1.6051 -0.2123 42 1 3.9360 -1.2896 -1.9376 43 1 3.6100 0.8794 1.3594 44 1 3.9360 2.3032 0.3352 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224689810.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:34 Heat of formation + Delta-G solvation = -91.391996 kcal Electronic energy + Delta-G solvation = -22363.825032 eV Core-core repulsion = 19087.620679 eV Total energy + Delta-G solvation = -3276.204353 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.51415 -38.83820 -37.36529 -34.72502 -32.41613 -32.32018 -32.05458 -30.14854 -28.85869 -25.70012 -25.30933 -24.37800 -21.95869 -21.57854 -21.07483 -20.07249 -18.89224 -17.31964 -16.80441 -16.66081 -15.76978 -15.68829 -15.40675 -15.16680 -14.59793 -14.45651 -14.26267 -13.93327 -13.67859 -13.16346 -12.92040 -12.85708 -12.65762 -12.62228 -12.09449 -12.02633 -11.83174 -11.57389 -11.44120 -11.31526 -11.22955 -11.16676 -10.75187 -10.69077 -9.92924 -9.80981 -9.74380 -9.63479 -9.59600 -9.18613 -8.93821 -8.54049 -6.04640 -4.02698 1.60099 3.30630 3.35546 3.37991 3.42149 3.47607 3.70419 4.15328 4.38173 4.42056 4.45189 4.51333 4.62096 4.78158 4.91244 4.93299 5.09680 5.20854 5.24869 5.26486 5.29919 5.33196 5.40305 5.46717 5.47162 5.54128 5.61158 5.64142 5.67563 5.81269 5.95370 5.96443 6.29089 6.35038 6.56119 6.58035 6.67669 6.86331 7.13133 7.17142 7.29608 7.42713 7.79395 8.53732 9.00200 9.57985 11.08927 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032276 B = 0.002905 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.311646 B = 9634.820861 C =10071.015410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.507 5.507 3 C 0.072 3.928 4 H 0.106 0.894 5 C -0.182 4.182 6 C 0.054 3.946 7 H 0.071 0.929 8 O -0.375 6.375 9 C 0.061 3.939 10 C -0.117 4.117 11 C -0.100 4.100 12 C -0.013 4.013 13 C -0.522 4.522 14 H 0.071 0.929 15 C 0.065 3.935 16 N -0.905 5.905 17 Si 0.881 3.119 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.265 1.265 21 C 0.073 3.927 22 H 0.115 0.885 23 C -0.157 4.157 24 C 0.364 3.636 25 O -0.459 6.459 26 C -0.158 4.158 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.011 0.989 39 H 0.016 0.984 40 H 0.263 0.737 41 H 0.113 0.887 42 H 0.095 0.905 43 H 0.108 0.892 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.613 -4.379 26.009 28.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.229 5.229 3 C -0.037 4.037 4 H 0.124 0.876 5 C -0.221 4.221 6 C -0.006 4.006 7 H 0.089 0.911 8 O -0.294 6.294 9 C -0.015 4.015 10 C -0.155 4.155 11 C -0.138 4.138 12 C -0.050 4.050 13 C -0.560 4.560 14 H 0.089 0.911 15 C -0.136 4.136 16 N -0.544 5.544 17 Si 0.708 3.292 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.190 1.190 21 C -0.036 4.036 22 H 0.133 0.867 23 C -0.195 4.195 24 C 0.239 3.761 25 O -0.332 6.332 26 C -0.196 4.196 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.030 0.970 39 H 0.034 0.966 40 H 0.073 0.927 41 H 0.131 0.869 42 H 0.113 0.887 43 H 0.126 0.874 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 11.045 -4.575 26.134 28.738 hybrid contribution -1.053 0.309 -0.693 1.298 sum 9.992 -4.266 25.441 27.664 Atomic orbital electron populations 1.22499 0.86696 1.02791 1.01650 1.65234 1.09479 1.14453 1.33709 1.22900 0.94186 0.90682 0.95901 0.87553 1.23546 1.04038 0.98630 0.95894 1.23609 0.88704 0.94403 0.93927 0.91075 1.87938 1.32551 1.83382 1.25557 1.22762 0.99485 0.97702 0.81541 1.21658 0.94805 1.02182 0.96841 1.21402 1.00393 1.00037 0.91979 1.19558 0.92631 0.96648 0.96189 1.21170 0.99254 1.40257 0.95270 0.91098 1.25050 0.98907 0.94933 0.94713 1.69919 1.30577 1.47207 1.06679 0.86758 0.83766 0.80006 0.78645 1.20301 1.21392 1.18963 1.23066 0.94388 0.98168 0.87968 0.86713 1.22519 0.94853 0.97582 1.04567 1.24939 0.83919 0.87628 0.79609 1.90433 1.21651 1.73179 1.47927 1.22565 0.95494 1.01038 1.00540 0.91105 0.91413 0.93278 0.90330 0.89474 0.93350 0.93533 0.91777 0.91661 0.92685 0.92761 0.97045 0.96581 0.92746 0.86885 0.88693 0.87374 0.88900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.39 60.06 0.56 0.66 16 2 N -0.51 -4.03 5.20 -221.21 -1.15 -5.18 16 3 C 0.07 0.53 3.62 -65.52 -0.24 0.29 16 4 H 0.11 0.65 8.08 -51.93 -0.42 0.23 16 5 C -0.18 -1.65 5.26 -25.33 -0.13 -1.79 16 6 C 0.05 0.55 2.30 -25.33 -0.06 0.49 16 7 H 0.07 0.77 7.38 -51.93 -0.38 0.38 16 8 O -0.38 -4.76 8.93 -35.23 -0.31 -5.08 16 9 C 0.06 0.84 5.78 37.16 0.21 1.05 16 10 C -0.12 -1.88 5.58 -26.73 -0.15 -2.03 16 11 C -0.10 -1.97 5.15 -26.74 -0.14 -2.11 16 12 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 13 C -0.52 -15.07 9.66 -34.44 -0.33 -15.40 16 14 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 15 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 16 N -0.90 -28.22 13.96 55.43 0.77 -27.44 16 17 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 21 C 0.07 0.63 3.32 -65.53 -0.22 0.41 16 22 H 0.11 0.99 8.08 -51.93 -0.42 0.57 16 23 C -0.16 -1.19 5.76 -27.01 -0.16 -1.35 16 24 C 0.36 3.32 5.49 -28.23 -0.15 3.17 16 25 O -0.46 -5.80 17.90 6.00 0.11 -5.70 16 26 C -0.16 -1.09 5.76 -27.01 -0.16 -1.25 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.48 6.32 -51.93 -0.33 0.15 16 30 H 0.08 0.71 7.71 -51.93 -0.40 0.31 16 31 H 0.09 0.86 7.96 -51.93 -0.41 0.44 16 32 H 0.05 0.64 8.10 -51.93 -0.42 0.22 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.01 0.27 7.58 -51.93 -0.39 -0.12 16 39 H 0.02 0.38 7.19 -51.93 -0.37 0.01 16 40 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 41 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 345.05 15.07 5.20 5.20 Total: -1.00 -32.34 345.05 -9.00 -41.34 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -7.79 Total: -3.95 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -1.16 Total: -16.46 kcal Atomic # 7 Polarization: -32.25 SS G_CDS: -0.38 Total: -32.62 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: -0.21 Total: -10.77 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.34 -9.00 -41.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224689810.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.049 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds