Wall clock time and date at job start Tue Mar 31 2020 05:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.46884 * 2 1 4 4 C 1.34231 * 116.99983 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00142 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00053 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.47517 * 59.99934 * 6 4 3 8 8 C 1.53000 * 109.47241 * 299.99973 * 6 4 3 9 9 C 1.52999 * 109.47492 * 300.00303 * 8 6 4 10 10 C 1.53005 * 109.47083 * 299.99788 * 9 8 6 11 11 C 1.53000 * 109.46784 * 59.99778 * 10 9 8 12 12 H 1.08989 * 109.47580 * 60.00036 * 11 10 9 13 13 N 1.46907 * 109.46918 * 180.02562 * 11 10 9 14 14 C 1.47478 * 110.99609 * 199.03018 * 13 11 10 15 15 C 1.53507 * 87.93197 * 138.70094 * 14 13 11 16 16 C 1.50704 * 114.17298 * 220.32614 * 15 14 13 17 17 H 1.07999 * 120.00144 * 93.83218 * 16 15 14 18 18 C 1.37876 * 119.99773 * 273.84201 * 16 15 14 19 19 N 1.31514 * 120.00029 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99956 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46921 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46872 * 119.99934 * 20 18 16 23 23 H 1.48494 * 109.47115 * 239.99813 * 20 18 16 24 24 C 1.47480 * 110.99415 * 294.99707 * 13 11 10 25 25 C 1.52999 * 109.47248 * 180.02562 * 6 4 3 26 26 H 1.08992 * 109.47399 * 59.99654 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99482 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00338 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00518 * 2 1 3 31 31 H 1.09003 * 109.46945 * 60.00367 * 8 6 4 32 32 H 1.09002 * 109.47368 * 179.97438 * 8 6 4 33 33 H 1.08998 * 109.47770 * 179.97438 * 9 8 6 34 34 H 1.09002 * 109.47066 * 59.99507 * 9 8 6 35 35 H 1.08999 * 109.47193 * 300.00256 * 10 9 8 36 36 H 1.08992 * 109.47235 * 179.97438 * 10 9 8 37 37 H 1.09005 * 113.47376 * 253.46141 * 14 13 11 38 38 H 1.08993 * 113.48477 * 23.92759 * 14 13 11 39 39 H 1.09003 * 114.17227 * 87.61872 * 15 14 13 40 40 H 0.97008 * 119.99679 * 180.02562 * 19 18 16 41 41 H 1.08991 * 113.47813 * 336.06061 * 24 13 11 42 42 H 1.09001 * 113.47702 * 106.47454 * 24 13 11 43 43 H 1.09002 * 109.47180 * 179.97438 * 25 6 4 44 44 H 1.08998 * 109.47295 * 300.00082 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9206 2.9375 0.0012 7 1 3.5844 3.4694 0.8912 8 6 3.4495 3.6848 -1.2480 9 6 3.9214 2.9383 -2.4974 10 6 5.4494 2.8582 -2.4969 11 6 5.9205 2.1109 -1.2478 12 1 5.5039 1.1037 -1.2481 13 7 7.3876 2.0345 -1.2470 14 6 7.8608 0.9685 -0.3444 15 6 8.8998 0.6015 -1.4132 16 6 9.1013 -0.8810 -1.5946 17 1 8.5451 -1.4129 -2.3523 18 6 9.9957 -1.5583 -0.7931 19 7 10.6733 -0.9105 0.1293 20 14 10.2450 -3.3960 -1.0175 21 1 9.3707 -3.8838 -2.1142 22 1 11.6647 -3.6646 -1.3602 23 1 9.8983 -4.1001 0.2431 24 6 7.8748 1.2188 -2.3749 25 6 5.4485 2.8575 0.0010 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 2.3610 3.7419 -1.2484 32 1 3.8657 4.6922 -1.2474 33 1 3.5855 3.4704 -3.3873 34 1 3.5049 1.9310 -2.4978 35 1 5.8660 3.8654 -2.4964 36 1 5.7856 2.3260 -3.3867 37 1 8.3018 1.3450 0.5786 38 1 7.1216 0.1865 -0.1708 39 1 9.8335 1.1589 -1.3380 40 1 11.3028 -1.3870 0.6930 41 1 7.1394 0.5036 -2.7432 42 1 8.3267 1.8075 -3.1733 43 1 5.8651 3.8647 0.0010 44 1 5.7846 2.3249 0.8907 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255358473.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:00 Heat of formation + Delta-G solvation = -70.353188 kcal Electronic energy + Delta-G solvation = -23305.231889 eV Core-core repulsion = 20029.939847 eV Total energy + Delta-G solvation = -3275.292042 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.97425 -39.17602 -37.30394 -36.18887 -32.68645 -31.98152 -30.96410 -30.60090 -26.88790 -25.13907 -24.24317 -23.90509 -22.60572 -21.64437 -20.64346 -19.57622 -18.46250 -17.37304 -16.86887 -16.39511 -15.92193 -15.40263 -14.75957 -14.42157 -14.40647 -13.86524 -13.74985 -13.59699 -13.17807 -13.03588 -12.83867 -12.26806 -12.06081 -11.98011 -11.85910 -11.74711 -11.56865 -11.28469 -11.12283 -10.91154 -10.88540 -10.66430 -10.59841 -10.52407 -10.30613 -10.02761 -9.73060 -9.45279 -8.99470 -8.78748 -8.34708 -7.78817 -5.97604 -4.00793 2.29888 2.65155 3.32776 3.40503 3.44797 4.44557 4.50423 4.65558 4.70651 4.76526 4.81118 4.92085 5.11016 5.18155 5.20615 5.33351 5.42074 5.50384 5.53883 5.56738 5.57749 5.62687 5.74104 5.86896 5.89914 6.06872 6.13376 6.22664 6.26359 6.31112 6.33577 6.43871 6.56602 6.70629 6.80197 6.84523 6.93993 7.27393 7.35852 7.82079 7.86253 8.01401 8.25207 8.48187 9.01981 9.63364 11.12221 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018064 B = 0.004734 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.671613 B = 5912.869533 C = 6858.670726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.362 6.362 4 C 0.460 3.540 5 O -0.488 6.488 6 C -0.077 4.077 7 H 0.106 0.894 8 C -0.108 4.108 9 C -0.121 4.121 10 C -0.113 4.113 11 C 0.038 3.962 12 H 0.070 0.930 13 N -0.481 5.481 14 C 0.009 3.991 15 C 0.039 3.961 16 C -0.512 4.512 17 H 0.056 0.944 18 C 0.066 3.934 19 N -0.887 5.887 20 Si 0.889 3.111 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.284 1.284 24 C -0.001 4.001 25 C -0.092 4.092 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.260 0.740 41 H 0.050 0.950 42 H 0.058 0.942 43 H 0.081 0.919 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.374 8.101 -0.857 21.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.280 6.280 4 C 0.303 3.697 5 O -0.374 6.374 6 C -0.096 4.096 7 H 0.124 0.876 8 C -0.146 4.146 9 C -0.159 4.159 10 C -0.151 4.151 11 C -0.071 4.071 12 H 0.088 0.912 13 N -0.204 5.204 14 C -0.120 4.120 15 C 0.020 3.980 16 C -0.550 4.550 17 H 0.075 0.925 18 C -0.136 4.136 19 N -0.525 5.525 20 Si 0.717 3.283 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.130 4.130 25 C -0.129 4.129 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.099 0.901 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.846 8.456 -0.624 20.666 hybrid contribution -0.280 -2.061 -0.019 2.080 sum -19.126 6.395 -0.643 20.177 Atomic orbital electron populations 1.21789 0.92807 1.02848 1.03310 1.22993 0.95141 0.80605 1.02732 1.86488 1.25038 1.32054 1.84409 1.23862 0.80296 0.93046 0.72541 1.90707 1.59791 1.43088 1.43812 1.21181 0.97380 0.89688 1.01397 0.87621 1.21539 1.01016 0.99319 0.92696 1.21582 0.96756 1.00073 0.97511 1.21585 0.93982 1.01264 0.98263 1.22415 0.91890 0.99378 0.93425 0.91208 1.68870 1.07779 1.36769 1.06942 1.23977 0.98926 0.91104 0.97964 1.20109 0.92733 0.95512 0.89596 1.21086 1.23082 0.92699 1.18147 0.92537 1.25001 0.95323 0.98129 0.95144 1.69985 1.26150 1.35665 1.20712 0.86588 0.77904 0.85817 0.78012 1.19775 1.20953 1.21036 1.23897 0.99135 0.94748 0.95230 1.21362 0.90073 1.01919 0.99593 0.91574 0.90372 0.91608 0.91281 0.91277 0.90949 0.90200 0.91478 0.92741 0.91426 0.91979 0.92253 0.92590 0.91968 0.93049 0.93139 0.92397 0.90076 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.29 37.16 0.38 -0.74 16 2 C 0.06 0.64 6.19 37.16 0.23 0.87 16 3 O -0.36 -4.54 10.12 -39.26 -0.40 -4.93 16 4 C 0.46 6.66 5.74 36.00 0.21 6.87 16 5 O -0.49 -8.96 13.41 -18.75 -0.25 -9.21 16 6 C -0.08 -0.94 3.11 -91.77 -0.29 -1.22 16 7 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 8 C -0.11 -1.11 5.39 -26.73 -0.14 -1.26 16 9 C -0.12 -1.46 5.70 -26.73 -0.15 -1.61 16 10 C -0.11 -1.68 5.19 -26.73 -0.14 -1.82 16 11 C 0.04 0.68 1.26 -67.73 -0.09 0.59 16 12 H 0.07 1.44 4.93 -51.94 -0.26 1.19 16 13 N -0.48 -10.17 6.13 -236.64 -1.45 -11.62 16 14 C 0.01 0.23 6.82 -7.55 -0.05 0.17 16 15 C 0.04 1.04 3.77 -91.24 -0.34 0.70 16 16 C -0.51 -14.59 8.82 -34.44 -0.30 -14.89 16 17 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 18 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 19 N -0.89 -26.42 13.26 55.43 0.74 -25.69 16 20 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 C 0.00 -0.03 6.13 -7.55 -0.05 -0.07 16 25 C -0.09 -1.40 4.53 -26.75 -0.12 -1.52 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 30 H 0.07 0.79 8.13 -51.93 -0.42 0.36 16 31 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.73 7.22 -51.93 -0.37 0.35 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.97 7.34 -51.93 -0.38 0.59 16 37 H 0.06 1.50 8.14 -51.93 -0.42 1.07 16 38 H 0.06 1.46 7.58 -51.93 -0.39 1.06 16 39 H 0.06 1.77 8.11 -51.93 -0.42 1.35 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.05 1.14 7.79 -51.93 -0.40 0.74 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.07 1.20 7.81 -51.93 -0.41 0.80 16 LS Contribution 344.88 15.07 5.20 5.20 Total: -1.00 -31.37 344.88 -9.81 -41.19 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -7.68 Total: 0.38 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -0.95 Total: -12.13 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: -0.72 Total: -37.31 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.65 Total: -14.14 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.37 -9.81 -41.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255358473.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.166 kcal (2) G-P(sol) polarization free energy of solvation -31.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds